Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	broad.mit.edu	37	7	48311657	48311657	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40742002	40742002	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119135033	119135033	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99640783	99640783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118101645	118101645	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf52	148423	broad.mit.edu	37	1	85725279	85725279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDSN	1041	broad.mit.edu	37	6	31088189	31088189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55844874	55844874	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196642129	196642130	+	Missense_Mutation	DNP	GA	TT	TT	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COMMD5	28991	broad.mit.edu	37	8	146076470	146076470	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70706192	70706192	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32834668	32834668	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJC16	23341	broad.mit.edu	37	1	15888681	15888681	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DPYSL3	1809	broad.mit.edu	37	5	146793183	146793183	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56487323	56487323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ETV4	2118	broad.mit.edu	37	17	41610308	41610308	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118970217	118970217	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
H2AFY2	55506	broad.mit.edu	37	10	71835428	71835428	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68628034	68628034	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1543	57662	broad.mit.edu	37	19	7677733	7677733	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170163814	170163814	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346715	71346715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33328813	33328813	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDUFA13	51079	broad.mit.edu	37	19	19626874	19626874	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140236864	140236864	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60497298	60497298	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTGS2	5743	broad.mit.edu	37	1	186646956	186646956	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPN18	26469	broad.mit.edu	37	2	131128788	131128788	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPL27	6155	broad.mit.edu	37	17	41154776	41154776	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RTKN2	219790	broad.mit.edu	37	10	63999439	63999440	+	Missense_Mutation	DNP	GA	TT	TT	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RUNX3	864	broad.mit.edu	37	1	25256117	25256117	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47129722	47129722	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118475727	118475727	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SULT1A2	6799	broad.mit.edu	37	16	28606779	28606779	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143140757	143140757	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138414712	138414712	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TM4SF19	116211	broad.mit.edu	37	3	196053866	196053866	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMPRSS13	84000	broad.mit.edu	37	11	117785150	117785150	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	11058309	11058309	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3920721	3920721	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B2-4101-01	TCGA-B2-4101-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
