Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MMEL1	79258	genome.wustl.edu	37	1	2538482	2538482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033467.3	-1	reviewed	p.P179S	1.000	64	0%	12	33.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
CAMTA1	23261	genome.wustl.edu	37	1	7805981	7805981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.A1483T	0.427	123	0%	120	32.5%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
PER3	8863	genome.wustl.edu	37	1	7887395	7887395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016831.1	+1	reviewed	p.Q794H	0.176	78	0%	112	31.2%	0	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	NULL
FBXO42	54455	genome.wustl.edu	37	1	16578103	16578103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018994.1	-1	provisional	p.G406S	1.000	86	0%	80	21.2%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PADI2	11240	genome.wustl.edu	37	1	17401415	17401415	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007365.2	-1	reviewed	p.S495	0.009	103	0%	91	11%	0	-	-	-	-	HMMPfam_PAD,superfamily_SSF55909
ARHGEF10L	55160	genome.wustl.edu	37	1	17949605	17949605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018125.3	+1	validated	p.A379T	1.000	106	0%	34	32.4%	2	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ZNF436	80818	genome.wustl.edu	37	1	23689466	23689466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077195.1	-1	validated	p.Y137N	0.195	179	0%	172	32.6%	0	-	benign(0.157)	tolerated(0.3)	neutral(0.043)	superfamily_SSF57667
ZNF642	339559	genome.wustl.edu	37	1	40945156	40945158	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198494.2	+1	validated	p.E42in_frame_del	1.000:0.999:0.998	-	-	-	-	-	-	-	-	-	NULL
TTC39A	22996	genome.wustl.edu	37	1	51787810	51787810	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080494.2	-1	validated	p.D8	0.969	77	0%	97	25.8%	0	-	-	-	-	NULL
NRD1	4898	genome.wustl.edu	37	1	52285504	52285504	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002525.2	-1	validated	p.F488C	1.000	145	0%	343	31.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M16_C
TMEM61	199964	genome.wustl.edu	37	1	55451893	55451893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182532.1	+1	provisional	p.P47S	0.002	55	0%	17	41.2%	1	0%	probably_damaging(0.998)	-	-	NULL
SRSF11	9295	genome.wustl.edu	37	1	70703202	70703202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004768.2	+1	reviewed	p.A229T	1.000	239	0%	284	23.2%	9	44.4%	unknown(0)	tolerated(0.06)	-	NULL
SASS6	163786	genome.wustl.edu	37	1	100572521	100572521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194292.1	-1	validated	p.A452D	1.000	186	0%	422	10.9%	0	-	benign(0.174)	tolerated(0.55)	neutral(0.023)	NULL
SLC25A24	29957	genome.wustl.edu	37	1	108697692	108697692	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013386.3	-1	validated	p.G245	1.000	188	0%	394	27.4%	0	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
HIPK1	204851	genome.wustl.edu	37	1	114498189	114498189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198268.1	+1	reviewed	p.P442H	1.000	73	0%	285	28.8%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAM46C	54855	genome.wustl.edu	37	1	118165644	118165644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017709.3	+1	validated	p.V52I	1.000	85	0%	63	23.8%	1	100%	benign(0.006)	tolerated(0.51)	neutral(0.009)	HMMPfam_DUF1693
NOTCH2	4853	genome.wustl.edu	37	1	120462020	120462020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024408.2	-1	reviewed	p.A1899V	1.000	54	0%	49	12.2%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
BCL9	607	genome.wustl.edu	37	1	147092212	147092212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.R751C	0.024	42	0%	47	29.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LINGO4	339398	genome.wustl.edu	37	1	151774961	151774961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004432.2	-1	provisional	p.G74W	1.000	72	0%	41	36.6%	0	-	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	superfamily_SSF52058
PKLR	5313	genome.wustl.edu	37	1	155264136	155264136	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392414	-1	known	p.W327*	1.000	207	0%	217	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PK,superfamily_Phosphoenolpyruvate/pyruvate domain
RUSC1	23623	genome.wustl.edu	37	1	155296382	155296382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105203.1	+1	validated	p.L625I	0.626	81	0%	44	29.5%	7	42.8%	possibly_damaging(0.616)	tolerated(0.47)	neutral(0.226)	HMMPfam_RUN,HMMSmart_SM00593
HSD17B7	51478	genome.wustl.edu	37	1	162762578	162762578	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016371.2	+1	validated	p.A55	0.009	102	0%	85	23.5%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
LMX1A	4009	genome.wustl.edu	37	1	165177316	165177316	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177398.3	-1	validated	p.T267	0.755	76	0%	49	32.7%	0	-	-	-	-	NULL
TADA1	117143	genome.wustl.edu	37	1	166831633	166831633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053053.3	-1	validated	p.Q116R	1.000	160	0%	153	34%	1	0%	possibly_damaging(0.836)	tolerated(0.17)	neutral(0.379)	NULL
IGFN1	91156	genome.wustl.edu	37	1	201184186	201184186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451870	+1	known	p.H510Y	0.851	62	0%	41	34.1%	0	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MFSD4	148808	genome.wustl.edu	37	1	205548878	205548878	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181644.4	+1	validated	e2-1	1.000	256	0%	86	32.6%	0	-	-	-	-	-
MARC2	54996	genome.wustl.edu	37	1	220936374	220936374	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017898.3	+1	provisional	p.G244	1.000	418	0%	448	19.4%	3	0%	-	-	-	HMMPfam_MOSC,superfamily_PK beta-barrel domain-like
JMJD4	65094	genome.wustl.edu	37	1	227920657	227920657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023007.2	-1	validated	p.Q344H	0.984	61	0%	15	33.3%	22	68.1%	probably_damaging(0.988)	tolerated(0.51)	neutral(0.447)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
ABCB10	23456	genome.wustl.edu	37	1	229683352	229683352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012089.2	-1	reviewed	p.I272N	0.998	92	0%	124	16.9%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
PGBD2	267002	genome.wustl.edu	37	1	249211989	249211989	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170725.2	+1	validated	p.V402	0.161	75	0%	171	32.2%	1	100%	-	-	-	NULL
COLEC11	78989	genome.wustl.edu	37	2	3691061	3691061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.R119H	0.921	45	0%	14	35.7%	2	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
LAPTM4A	9741	genome.wustl.edu	37	2	20234775	20234775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014713.4	-1	reviewed	p.L161V	1.000	156	0%	463	28.5%	261	38.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Mtp
ITSN2	50618	genome.wustl.edu	37	2	24432005	24432005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006277.2	-1	reviewed	p.R1520L	1.000	181	0%	272	24.3%	4	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like
HADHB	3032	genome.wustl.edu	37	2	26496539	26496539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000183.2	+1	reviewed	p.S92N	0.010	165	0%	259	25.5%	15	53.3%	benign(0.123)	tolerated(0.26)	neutral(0.044)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ALK	238	genome.wustl.edu	37	2	29432652	29432652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.R1279M	1.000	89	0%	72	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
BIRC6	57448	genome.wustl.edu	37	2	32693581	32693581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.A1953T	1.000	136	0%	163	18.4%	1	100%	probably_damaging(0.978)	deleterious(0.05)	deleterious(0.766)	NULL
SIX2	10736	genome.wustl.edu	37	2	45235818	45235818	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016932.4	-1	reviewed	p.A144	0.984	76	0%	21	42.9%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
FBXO11	80204	genome.wustl.edu	37	2	48066602	48066602	+	Missense_Mutation	SNP	C	C	G	rs139756043	by1000genomes	TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025133.3	-1	reviewed	p.R49P	1.000	153	0%	183	20.2%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71615800	71615800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000410075	+1	known	p.A809T	0.049	42	0%	57	12.3%	3	0%	possibly_damaging(0.792)	deleterious(0.02)	deleterious(0.680)	NULL
SFXN5	94097	genome.wustl.edu	37	2	73226096	73226096	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425259	-1	known	p.S29*	1.000	144	0%	113	32.7%	0	-	possibly_damaging(0.44)	tolerated(0.09)	neutral(0.440)	HMMPfam_Mtc
REEP1	65055	genome.wustl.edu	37	2	86481861	86481861	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022912.2	-1	reviewed	p.L87	1.000	173	0%	386	30.8%	1	100%	-	-	-	HMMPfam_TB2_DP1_HVA22
RNF103	7844	genome.wustl.edu	37	2	86831569	86831569	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005667.2	-1	reviewed	p.D485	1.000	82	0%	235	26.4%	15	46.6%	-	-	-	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049425	107049425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.L812R	1.000	403	1.2%	1120	20.6%	0	-	probably_damaging(0.996)	tolerated(0.35)	deleterious(0.482)	NULL
GALNT3	2591	genome.wustl.edu	37	2	166616000	166616000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004482.3	-1	reviewed	p.A307T	1.000	149	0%	83	18.1%	1	0%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
DHRS9	10170	genome.wustl.edu	37	2	169939953	169939953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142270.1	+1	validated	p.S143N	0.014	136	0%	315	30.5%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
ITGAV	3685	genome.wustl.edu	37	2	187511543	187511543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002210.3	+1	reviewed	p.M430I	1.000	180	0%	385	22.9%	2	100%	benign(0.022)	tolerated(0.61)	neutral(0.005)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
MFSD6	54842	genome.wustl.edu	37	2	191362204	191362204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017694.3	+1	validated	p.S644N	1.000	156	0%	260	27.3%	1	0%	probably_damaging(0.978)	tolerated(0.24)	neutral(0.458)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196774867	196774867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.A1330S	1.000	112	0%	132	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERBB4	2066	genome.wustl.edu	37	2	212289002	212289002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.T915S	1.000	144	0%	224	35.3%	1	100%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SLC11A1	6556	genome.wustl.edu	37	2	219249962	219249962	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000578.3	+1	reviewed	p.G122	0.010	67	0%	38	23.7%	1	0%	-	-	-	HMMPfam_Nramp
ATG16L1	55054	genome.wustl.edu	37	2	234198502	234198502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030803.6	+1	validated	p.H402Q	1.000	110	0%	102	32.4%	0	-	unknown(0)	deleterious(0.05)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ITPR1	3708	genome.wustl.edu	37	3	4725385	4725385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.S1125Y	1.000	140	0%	316	32%	1	0%	possibly_damaging(0.629)	tolerated(0.22)	neutral(0.262)	NULL
PLCL2	23228	genome.wustl.edu	37	3	17052031	17052031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015184.5	+1	validated	p.G272D	1.000	65	0%	106	25.5%	0	-	possibly_damaging(0.949)	tolerated(0.1)	deleterious(0.679)	HMMPfam_efhand_like,superfamily_SSF47473
SCN5A	6331	genome.wustl.edu	37	3	38601874	38601874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.V1337I	1.000	240	0%	267	24.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CCR9	10803	genome.wustl.edu	37	3	45942506	45942506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031200.1	+1	reviewed	p.C76G	1.000	308	0%	188	35.1%	0	-	possibly_damaging(0.553)	tolerated(0.31)	neutral(0.215)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LAMB2	3913	genome.wustl.edu	37	3	49161028	49161028	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.Q1278	0.952	75	0%	33	24.2%	16	37.5%	-	-	-	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	55043449	55043449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.H952Y	1.000	230	0%	299	30.1%	1	0%	benign(0)	tolerated(1)	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78987928	78987929	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.R107fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYLK	4638	genome.wustl.edu	37	3	123357009	123357009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053025.3	-1	reviewed	p.T1624S	1.000	85	0%	76	27.6%	2	50%	benign(0.005)	deleterious(0)	neutral(0.445)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COL6A5	256076	genome.wustl.edu	37	3	130110455	130110455	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.A950	0.978	77	1.3%	166	27.7%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
PLSCR5	389158	genome.wustl.edu	37	3	146311731	146311731	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085420.1	-1	validated	p.C143	1.000	105	0%	144	31.2%	0	-	-	-	-	HMMPfam_Scramblase
IFT80	57560	genome.wustl.edu	37	3	160083920	160083920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020800.1	-1	validated	p.A154T	1.000	103	0%	456	28.3%	0	-	benign(0.01)	tolerated(0.56)	neutral(0.007)	HMMSmart_WD40,superfamily_WD40_like
SLC7A14	57709	genome.wustl.edu	37	3	170198391	170198391	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020949.2	-1	validated	p.A560	0.004	185	0%	118	32.2%	0	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916890	178916890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R93W	1.000	62	0%	156	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178922363	178922363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.C378R	1.000	220	0%	243	27.6%	0	-	probably_damaging(0.964)	tolerated(0.35)	neutral(0.427)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
IL1RAP	3556	genome.wustl.edu	37	3	190363532	190363534	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002182.3	+1	reviewed	p.E419in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
LOC650293	650293	genome.wustl.edu	37	4	8951675	8951675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040071.1	+1	provisional	p.Q67*	0.617	140	0.7%	158	32.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DHX15	1665	genome.wustl.edu	37	4	24572455	24572455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001358.2	-1	reviewed	p.V175L	1.000	260	0%	343	28.3%	7	85.7%	benign(0)	tolerated(1)	-	HMMSmart_AAA,HMMSmart_DEXDc,superfamily_SSF52540
UGT2B7	7364	genome.wustl.edu	37	4	69962466	69962466	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001074.2	+1	validated	p.I76	0.000	77	0%	183	30.1%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
METAP1	23173	genome.wustl.edu	37	4	99982307	99982307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015143.2	+1	validated	p.G334R	1.000	92	0%	105	38.1%	9	44.4%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
RG9MTD2	93587	genome.wustl.edu	37	4	100475082	100475082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134665.1	-1	validated	p.I169V	0.974	273	0%	358	24%	5	20%	benign(0.008)	tolerated(0.52)	neutral(0.009)	HMMPfam_tRNA_m1G_MT
EMCN	51705	genome.wustl.edu	37	4	101396250	101396250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016242.3	-1	validated	p.E68D	0.000	93	0%	446	27.4%	1	0%	possibly_damaging(0.568)	deleterious(0)	deleterious(0.639)	HMMPfam_Endomucin
ALPK1	80216	genome.wustl.edu	37	4	113353163	113353163	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.S820	0.002	82	0%	72	29.2%	4	100%	-	-	-	NULL
SEC24D	9871	genome.wustl.edu	37	4	119666150	119666150	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.G591	0.909	220	0%	343	25.1%	3	66.6%	-	-	-	HMMPfam_Sec23_trunk,superfamily_vWA-like
FAT4	79633	genome.wustl.edu	37	4	126412283	126412283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.R4769H	1.000	53	0%	40	22.5%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
PCDH10	57575	genome.wustl.edu	37	4	134072054	134072054	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.P253	1.000	95	0%	60	30%	0	-	-	-	-	superfamily_Cadherin-like
GAB1	2549	genome.wustl.edu	37	4	144354723	144354723	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512843	+1	known	p.P27H	0.104	237	0%	439	25.7%	0	-	-	-	-	NULL
TRIM60	166655	genome.wustl.edu	37	4	165961438	165961438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152620.2	+1	reviewed	p.R72C	0.000	202	0%	169	27.8%	0	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57850
SORBS2	8470	genome.wustl.edu	37	4	186545502	186545502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021069.4	-1	reviewed	p.G357S	0.989	121	0%	98	35.7%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
PAPD7	11044	genome.wustl.edu	37	5	6748668	6748668	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006999.4	+1	reviewed	p.P267	0.319	191	0%	97	34%	0	-	-	-	-	NULL
TSSK1B	83942	genome.wustl.edu	37	5	112770528	112770528	+	Silent	SNP	G	G	A	rs192415501	by1000genomes	TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032028.3	-1	validated	p.D3	0.988	38	0%	32	15.6%	0	-	-	-	-	NULL
ADAMTS19	171019	genome.wustl.edu	37	5	129070631	129070631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.I1101V	0.998	89	0%	193	29%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,PatternScan_ZINC_FINGER_C2H2_1
P4HA2	8974	genome.wustl.edu	37	5	131533962	131533962	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142599.1	-1	reviewed	p.N436	0.932	313	0%	292	32.5%	11	54.5%	-	-	-	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
PCDHA11	56138	genome.wustl.edu	37	5	140250670	140250670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.T661M	0.998	42	0%	15	40%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263587	140263587	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.S578	0.648	60	0%	28	28.6%	0	-	-	-	-	superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140559246	140559246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.S544N	1.000	96	0%	42	31%	1	0%	possibly_damaging(0.584)	deleterious(0.03)	deleterious(0.566)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
LARS	51520	genome.wustl.edu	37	5	145522644	145522644	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020117.9	-1	reviewed	p.P627	0.000	40	0%	121	32.2%	11	72.7%	-	-	-	superfamily_Nucleotidylyl transferase
RBM22	55696	genome.wustl.edu	37	5	150080022	150080022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018047.2	-1	reviewed	p.N31T	1.000	210	0%	168	29.8%	5	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GLRA1	2741	genome.wustl.edu	37	5	151208549	151208549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000171.3	-1	reviewed	p.A331V	0.992	80	0%	76	36.8%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
SOX30	11063	genome.wustl.edu	37	5	157065492	157065492	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178424.1	-1	reviewed	p.S542	0.104	96	0%	173	35.3%	0	-	-	-	-	NULL
SLU7	10569	genome.wustl.edu	37	5	159842139	159842139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006425.4	-1	reviewed	p.E55*	1.000	268	0%	697	28.8%	1	0%	-	-	-	NULL
GABRP	2568	genome.wustl.edu	37	5	170236617	170236617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014211.2	+1	reviewed	p.R293H	1.000	412	0%	339	28.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
C5orf25	375484	genome.wustl.edu	37	5	175717103	175717104	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420396	+1	known	p.174in_frame_insR	0.055:0.033	-	-	-	-	-	-	-	-	-	NULL
C5orf25	375484	genome.wustl.edu	37	5	175717343	175717343	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420396	+1	known	p.R253	0.035	308	0%	388	34.3%	1	100%	-	-	-	NULL
DOK3	79930	genome.wustl.edu	37	5	176936498	176936498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024872.2	-1	validated	p.Q71R	1.000	116	0%	32	34.4%	3	0%	probably_damaging(0.955)	deleterious(0.04)	deleterious(0.748)	HMMPfam_PH,HMMSmart_SM00233
HNRNPH1	3187	genome.wustl.edu	37	5	179045279	179045279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005520.2	-1	reviewed	p.H194Q	0.993	202	0%	87	25.3%	30	6.6%	benign(0.039)	tolerated(0.1)	neutral(0.288)	superfamily_RNA-binding domain RBD
KIF13A	63971	genome.wustl.edu	37	6	17800268	17800268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022113.4	-1	validated	p.S844L	1.000	177	0%	168	29.8%	0	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
DDR1	780	genome.wustl.edu	37	6	30860113	30860113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013994.2	+1	reviewed	p.P298H	1.000	138	0%	198	29.8%	9	33.3%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
BYSL	705	genome.wustl.edu	37	6	41900317	41900317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004053.3	+1	reviewed	p.D396G	0.998	85	0%	44	34.1%	17	35.2%	benign(0.004)	deleterious(0)	neutral(0.445)	HMMPfam_Bystin
RCAN2	10231	genome.wustl.edu	37	6	46214543	46214543	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005822.2	-1	validated	p.N125	0.167	133	0%	102	12.7%	4	0%	-	-	-	HMMPfam_Calcipressin
TDRD6	221400	genome.wustl.edu	37	6	46660536	46660536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.Q1557H	0.000	169	0%	298	27.2%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_TUDOR
TDRD6	221400	genome.wustl.edu	37	6	46661434	46661434	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.Q1857*	0.452	21	0%	67	32.8%	0	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56472914	56472914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370769	-1	known	p.S1960F	0.966	59	0%	145	11%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
KLHL32	114792	genome.wustl.edu	37	6	97561929	97561929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052904.3	+1	validated	p.E300K	1.000	108	0%	110	25.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MMS22L	253714	genome.wustl.edu	37	6	97626329	97626329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.R890Q	0.002	43	0%	312	29.2%	0	-	benign(0.006)	tolerated(0.62)	neutral(0.004)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129802584	129802584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.Q2583H	1.000	203	0%	201	31.8%	0	-	benign(0.056)	tolerated(0.15)	neutral(0.244)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
TAB2	23118	genome.wustl.edu	37	6	149699331	149699331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015093.4	+1	reviewed	p.G94*	1.000	119	0%	383	26.4%	1	0%	-	-	-	NULL
MTRF1L	54516	genome.wustl.edu	37	6	153316347	153316347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019041.5	-1	validated	p.I149M	0.987	110	0%	256	23.8%	5	60%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_PCRF,superfamily_Release factor (Pfam 00472)
RSPH10B2	728194	genome.wustl.edu	37	7	6838057	6838057	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099697.1	+1	provisional	p.T832	0.002	575	0%	628	22.8%	3	33.3%	-	-	-	NULL
POU6F2	11281	genome.wustl.edu	37	7	39379596	39379596	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007252.3	+1	reviewed	p.T289	0.983	292	0%	152	28.9%	0	-	-	-	-	NULL
ENSG00000249078	0	genome.wustl.edu	37	7	39894635	39894635	+	RNA	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507268	+1	known	NULL	0.423	87	0%	191	11%	0	-	-	-	-	-
PKD1L1	168507	genome.wustl.edu	37	7	47870859	47870859	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.T2143	0.000	80	0%	70	31.4%	0	-	-	-	-	NULL
ELN	2006	genome.wustl.edu	37	7	73477974	73477974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000501.2	+1	reviewed	p.G648R	0.008	259	0%	157	26.8%	12	16.6%	unknown(0)	deleterious(0)	-	NULL
GTF2IRD2	84163	genome.wustl.edu	37	7	74211478	74211478	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173537.2	-1	validated	p.L791	0.986	152	0%	190	20%	3	33.3%	-	-	-	NULL
FBXO24	26261	genome.wustl.edu	37	7	100189494	100189494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	p.R176H	1.000	70	0%	90	41.1%	0	-	probably_damaging(0.995)	tolerated(0.34)	deleterious(0.481)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113518928	113518928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.T740I	1.000	155	0%	346	28.6%	0	-	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
GCC1	79571	genome.wustl.edu	37	7	127222557	127222557	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.S613	0.182	120	0%	57	21.1%	2	50%	-	-	-	NULL
CPA5	93979	genome.wustl.edu	37	7	129986088	129986088	+	Splice_Site	DEL	G	G	-	rs139621108	byCluster;by1000genomes	TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127441.1	+1	validated	e0+2	0.002	-	-	-	-	-	-	-	-	-	-
TBXAS1	6916	genome.wustl.edu	37	7	139661818	139661818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001061.4	+1	reviewed	p.T308I	0.000	193	0%	138	44.2%	11	9%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_p450,superfamily_Cytochrome P450
CNTNAP2	26047	genome.wustl.edu	37	7	146829371	146829371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.T373M	0.995	125	0%	230	30.4%	0	-	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	superfamily_Concanavalin A-like lectins/glucanases
HMBOX1	79618	genome.wustl.edu	37	8	28908596	28908596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135726.1	+1	validated	p.A396V	1.000	224	0%	407	14.5%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
PLAT	5327	genome.wustl.edu	37	8	42038072	42038072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000930.3	-1	reviewed	p.L341M	0.874	65	0%	40	32.5%	7	0%	possibly_damaging(0.83)	deleterious(0.04)	deleterious(0.664)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
POLB	5423	genome.wustl.edu	37	8	42196187	42196187	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002690.1	+1	provisional	p.I15	1.000	53	0%	61	24.6%	1	0%	-	-	-	HMMSmart_POLXc,superfamily_DNApol_B_N_like
SLC20A2	6575	genome.wustl.edu	37	8	42287686	42287686	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006749.3	-1	provisional	p.W535*	1.000	100	0%	51	29.4%	0	-	-	-	-	HMMPfam_PHO4
TRPA1	8989	genome.wustl.edu	37	8	72946576	72946576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007332.2	-1	reviewed	p.E864D	0.998	41	0%	324	11.7%	0	-	benign(0.085)	tolerated(0.23)	neutral(0.048)	HMMPfam_Ion_trans
TMEM67	91147	genome.wustl.edu	37	8	94800076	94800076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.H473Y	0.101	198	0%	426	30.5%	3	0%	unknown(0)	tolerated(0.11)	-	HMMPfam_Meckelin
UBR5	51366	genome.wustl.edu	37	8	103284802	103284802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.P2310S	1.000	203	0%	337	24.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_HECT
MTSS1	9788	genome.wustl.edu	37	8	125580658	125580658	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014751.4	-1	validated	p.R194*	1.000	89	0%	133	22.6%	1	100%	-	-	-	HMMPfam_IMD
KANK1	23189	genome.wustl.edu	37	9	738311	738311	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.H1120	0.983	132	0.8%	98	25.5%	0	-	-	-	-	superfamily_ANK
IFNA14	3448	genome.wustl.edu	37	9	21239377	21239377	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002172.2	-1	validated	p.R186	0.000	285	0%	539	28.4%	0	-	-	-	-	HMMPfam_Interferon,superfamily_4_helix_cytokine
C9orf72	203228	genome.wustl.edu	37	9	27560281	27560291	+	Frame_Shift_Del	DEL	AGTGTGAGCTG	AGTGTGAGCTG	-	rs147034723	by1000genomes	TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	AGTGTGAGCTG	AGTGTGAGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018325.2	-1	validated	p.S225fs	1.000:1.000:1.000:1.000:0.990:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TMEM215	401498	genome.wustl.edu	37	9	32784431	32784431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212558.2	+1	validated	p.R84W	0.999	61	0%	51	21.6%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
CCIN	881	genome.wustl.edu	37	9	36170340	36170340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005893.2	+1	reviewed	p.V281M	0.987	26	0%	25	28%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PAX5	5079	genome.wustl.edu	37	9	36840595	36840595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016734.1	-1	reviewed	p.A380T	0.999	65	0%	45	26.7%	1	0%	unknown(0)	deleterious(0.01)	-	NULL
PAX5	5079	genome.wustl.edu	37	9	36966555	36966555	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016734.1	-1	reviewed	p.K257N	1.000	240	0%	46	32.6%	0	-	benign(0.304)	deleterious(0)	deleterious(0.539)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79461497	79461497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.V148M	1.000	108	0%	144	34%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF64182
NAA35	60560	genome.wustl.edu	37	9	88628663	88628663	+	Silent	SNP	C	C	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024635.3	+1	validated	p.T473	0.992	134	0%	132	34.1%	5	60%	-	-	-	NULL
FAM22F	54754	genome.wustl.edu	37	9	97087950	97087950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017561.1	-1	validated	p.P95T	0.001	52	0%	21	23.8%	0	-	benign(0.045)	tolerated(0.4)	neutral(0.018)	NULL
ANKS6	203286	genome.wustl.edu	37	9	101546299	101546299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173551.3	-1	provisional	p.A350T	0.988	72	0%	41	41.5%	9	77.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TTLL11	158135	genome.wustl.edu	37	9	124736324	124736324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139442.1	-1	validated	p.R572H	1.000	145	0%	236	34.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_TTL
GAPVD1	26130	genome.wustl.edu	37	9	128094339	128094339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015635.2	+1	validated	p.G770S	1.000	115	0%	167	24.6%	0	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
ENG	2022	genome.wustl.edu	37	9	130587079	130587079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114753.1	-1	reviewed	p.G331S	0.914	76	0%	31	19.4%	44	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
CELF2	10659	genome.wustl.edu	37	10	11299756	11299756	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006561.3	+1	reviewed	p.N153	1.000	169	0%	131	31.3%	2	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PARD3	56288	genome.wustl.edu	37	10	34648198	34648198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.E648D	1.000	257	0%	496	27.2%	6	50%	benign(0.003)	tolerated(0.15)	neutral(0.241)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
KAT6B	23522	genome.wustl.edu	37	10	76788343	76788343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.R1254H	0.876	88	0%	240	30.4%	0	-	benign(0.074)	deleterious(0)	neutral(0.450)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	180	0%	305	43.3%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
MYOF	26509	genome.wustl.edu	37	10	95115443	95115443	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.K1115	0.987	136	0%	165	30.3%	4	25%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PLCE1	51196	genome.wustl.edu	37	10	95930957	95930957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.V505M	1.000	107	0%	181	30.9%	0	-	benign(0)	tolerated(1)	-	superfamily_Ras GEF
PPRC1	23082	genome.wustl.edu	37	10	103899009	103899009	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015062.3	+1	reviewed	p.E248	0.311	112	0%	90	32.2%	0	-	-	-	-	NULL
TRIM8	81603	genome.wustl.edu	37	10	104416807	104416807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030912.2	+1	validated	p.A451G	1.000	23	0%	20	50%	43	34.8%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
PNLIPRP2	5408	genome.wustl.edu	37	10	118386478	118386478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005396.4	+1	validated	p.R146W	0.991	237	0%	143	23.1%	0	-	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128788756	128788756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.M121T	1.000	221	0%	339	27.4%	0	-	possibly_damaging(0.935)	tolerated(0.11)	deleterious(0.652)	NULL
OR10A5	144124	genome.wustl.edu	37	11	6867852	6867852	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178168.1	+1	provisional	p.R313	0.939	65	0%	60	25%	0	-	-	-	-	NULL
TUB	7275	genome.wustl.edu	37	11	8115602	8115602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003320.4	+1	reviewed	p.A143V	1.000	98	0%	32	21.9%	0	-	benign(0.008)	tolerated(0.05)	neutral(0.345)	NULL
STK33	65975	genome.wustl.edu	37	11	8494768	8494768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030906.2	-1	validated	p.G94D	0.007	186	0%	304	19.7%	3	100%	benign(0.06)	deleterious(0.02)	neutral(0.387)	superfamily_Protein kinase-like (PK-like)
GALNTL4	374378	genome.wustl.edu	37	11	11354297	11354297	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198516.2	-1	validated	p.L454fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
FIBIN	387758	genome.wustl.edu	37	11	27016595	27016595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203371.1	+1	validated	p.K174N	1.000	73	0%	56	21.4%	0	-	possibly_damaging(0.733)	deleterious(0.02)	deleterious(0.651)	NULL
PHF21A	51317	genome.wustl.edu	37	11	45987009	45987009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101802.1	-1	validated	p.V284I	1.000	248	0%	434	27%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
OR10Q1	219960	genome.wustl.edu	37	11	57995923	57995923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004471.2	-1	validated	p.R142H	0.000	105	0%	130	28.5%	0	-	possibly_damaging(0.888)	tolerated(0.31)	neutral(0.374)	HMMPfam_7tm_1,superfamily_SSF81321
PLCB3	5331	genome.wustl.edu	37	11	64031499	64031499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.A856V	0.999	73	0%	24	20.8%	4	0%	possibly_damaging(0.6)	tolerated(0.88)	neutral(0.207)	NULL
RBM14	10432	genome.wustl.edu	37	11	66393038	66393038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006328.3	+1	validated	p.G564E	1.000	35	0%	16	43.8%	17	58.8%	unknown(0)	deleterious(0.01)	-	NULL
POLD3	10714	genome.wustl.edu	37	11	74329633	74329633	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006591.1	+1	validated	p.S148	0.090	113	0%	179	12.8%	2	0%	-	-	-	HMMPfam_CDC27
CNTN5	53942	genome.wustl.edu	37	11	99932018	99932018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014361.2	+1	reviewed	p.A352V	0.980	138	0%	192	34.9%	0	-	possibly_damaging(0.919)	deleterious(0.02)	deleterious(0.752)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SIK3	23387	genome.wustl.edu	37	11	116729114	116729114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025164.3	-1	validated	p.P917S	1.000	309	0%	156	12.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCSK7	9159	genome.wustl.edu	37	11	117095427	117095427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004716.2	-1	reviewed	p.Q302R	1.000	154	0%	65	21.5%	3	0%	possibly_damaging(0.926)	tolerated(0.63)	neutral(0.378)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
EFCAB4B	84766	genome.wustl.edu	37	12	3736873	3736873	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144958.1	-1	validated	e13-1	1.000	119	0%	44	25%	0	-	-	-	-	-
C1R	715	genome.wustl.edu	37	12	7188477	7188477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.G507C	0.995	79	0%	61	23%	87	18.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CD163	9332	genome.wustl.edu	37	12	7647795	7647795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.N434K	0.001	299	0.3%	397	33.8%	4	0%	benign(0.121)	tolerated(0.16)	neutral(0.069)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
PDE3A	5139	genome.wustl.edu	37	12	20523070	20523070	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.P284	0.999	14	0.000	7	0.571	0	-	-	-	-	NULL
LDHB	3945	genome.wustl.edu	37	12	21797024	21797024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002300.6	-1	reviewed	p.N89S	1.000	87	0%	69	21.7%	275	36.7%	benign(0.189)	deleterious(0.03)	neutral(0.382)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
TUBA1A	7846	genome.wustl.edu	37	12	49579083	49579083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006009.2	-1	reviewed	p.N356Y	1.000	152	0.7%	147	32.7%	1061	22.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBA1C	84790	genome.wustl.edu	37	12	49666705	49666705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032704.3	+1	provisional	p.T349A	1.000	136	0%	123	28.5%	589	48.5%	benign(0.296)	deleterious(0)	deleterious(0.536)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
KRT81	3887	genome.wustl.edu	37	12	52681499	52681499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002281.3	-1	reviewed	p.E303K	1.000	252	0%	130	26.2%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Filament
STAT6	6778	genome.wustl.edu	37	12	57500011	57500011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003153.4	-1	reviewed	p.A215T	0.605	95	0%	60	45%	1	0%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_STAT_alpha,superfamily_STAT
PTPRB	5787	genome.wustl.edu	37	12	71029613	71029613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.D97N	0.950	137	0%	210	12.9%	0	-	benign(0.008)	tolerated(0.11)	neutral(0.272)	superfamily_Ricin B-like lectins
MYF5	4617	genome.wustl.edu	37	12	81111315	81111315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005593.2	+1	validated	p.S158I	1.000	52	0%	36	27.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_HLH_basic
C12orf12	196477	genome.wustl.edu	37	12	91347791	91347791	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152638.2	-1	predicted	p.T243	0.013	224	0%	115	25.2%	0	-	-	-	-	NULL
ANKRD13A	88455	genome.wustl.edu	37	12	110449906	110449906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033121.1	+1	validated	p.A65T	1.000	124	0.8%	190	25.8%	1	100%	possibly_damaging(0.943)	tolerated(0.06)	deleterious(0.710)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
HIP1R	9026	genome.wustl.edu	37	12	123341055	123341055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003959.1	+1	validated	p.A493V	1.000	167	0%	34	23.5%	9	11.1%	benign(0.003)	tolerated(0.07)	neutral(0.319)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123645772	123645772	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.Q946*	0.003	134	0%	169	27.2%	4	0%	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132512732	132512732	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.E1759	0.975	157	0%	58	29.3%	1	100%	-	-	-	NULL
DIS3	22894	genome.wustl.edu	37	13	73336070	73336070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014953.3	-1	validated	p.P778H	1.000	69	0%	157	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II
OR4K13	390433	genome.wustl.edu	37	14	20502592	20502592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004714.1	-1	provisional	p.G109E	0.001	77	0%	186	27.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G2	26534	genome.wustl.edu	37	14	22102389	22102389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005466.1	-1	validated	p.T204A	0.999	145	0%	132	29.5%	0	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BAZ1A	11177	genome.wustl.edu	37	14	35272178	35272178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.T248M	1.000	176	0%	246	11.8%	0	-	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
PNN	5411	genome.wustl.edu	37	14	39650749	39650749	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002687.3	+1	validated	p.S612	0.942	257	0%	335	31.3%	13	7.6%	-	-	-	NULL
MAX	4149	genome.wustl.edu	37	14	65560514	65560514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002382.3	-1	reviewed	p.H28R	1.000	246	0%	287	28.2%	29	34.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
MLH3	27030	genome.wustl.edu	37	14	75513702	75513703	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.E886fs	0.807:0.851	-	-	-	-	-	-	-	-	-	NULL
TTC7B	145567	genome.wustl.edu	37	14	91123605	91123605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010854.1	-1	provisional	p.K418N	1.000	130	0%	70	32.9%	3	0%	benign(0.424)	tolerated(0.36)	neutral(0.158)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ZFYVE21	79038	genome.wustl.edu	37	14	104195253	104195253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024071.2	+1	provisional	p.F123I	1.000	160	0%	55	27.3%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IGHG3	3502	genome.wustl.edu	37	14	106237717	106237717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390550	-1	known	p.S9Y	0.997	126	0%	216	25.5%	31	0%	possibly_damaging(0.881)	deleterious(0.01)	deleterious(0.749)	superfamily_Immunoglobulin
GJD2	57369	genome.wustl.edu	37	15	35044792	35044792	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020660.1	-1	provisional	p.R285*	1.000	153	0%	80	28.7%	0	-	-	-	-	NULL
ITGA11	22801	genome.wustl.edu	37	15	68643629	68643629	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004439.1	-1	reviewed	p.S287	0.996	381	0%	205	26.3%	1	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
PKM2	5315	genome.wustl.edu	37	15	72492940	72492940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002654.3	-1	reviewed	p.R455Q	1.000	79	0%	24	25%	1226	45.2%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_PK_C,superfamily_PK C-terminal domain-like
SEMA7A	8482	genome.wustl.edu	37	15	74707019	74707019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003612.3	-1	reviewed	p.A388V	0.014	112	0%	37	13.5%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SGK269	79834	genome.wustl.edu	37	15	77407169	77407169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024776.2	-1	validated	p.L1524F	1.000	62	0%	75	30.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
ALPK3	57538	genome.wustl.edu	37	15	85405913	85405913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.A1595T	1.000	112	0%	122	15.6%	2	50%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMPfam_Alpha_kinase,superfamily_Protein kinase-like (PK-like)
IFT140	9742	genome.wustl.edu	37	16	1573848	1573848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.A1084E	1.000	107	0%	26	38.5%	11	81.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
SRRM2	23524	genome.wustl.edu	37	16	2816392	2816392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.R1955C	0.975	45	0%	60	28.3%	6	33.3%	unknown(0)	-	-	NULL
PRSS41	360226	genome.wustl.edu	37	16	2849425	2849425	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135086.1	+1	provisional	p.R145	0.048	219	0%	76	32.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ABCC6P1	653190	genome.wustl.edu	37	16	18591616	18591616	+	RNA	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003569.1	+1	provisional	NULL	0.936	113	0%	137	8.8%	0	-	benign(0.103)	tolerated(0.83)	neutral(0.009)	-
ACSM3	6296	genome.wustl.edu	37	16	20796428	20796428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.T381M	1.000	89	0%	133	27.1%	36	38.8%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
METTL9	51108	genome.wustl.edu	37	16	21666672	21666672	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016025.3	+1	validated	p.R292	0.999	152	0%	256	32.4%	125	40%	-	-	-	HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
USP31	57478	genome.wustl.edu	37	16	23119456	23119456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020718.3	-1	validated	p.D228N	1.000	166	0%	105	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZKSCAN2	342357	genome.wustl.edu	37	16	25251498	25251500	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	ATA	ATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012981.4	-1	validated	p.I848in_frame_del	0.874:0.784:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000196347	0	genome.wustl.edu	37	16	28711619	28711619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357418	-1	known	p.R194C	0.741	49	0%	33	27.3%	0	-	-	-	-	NULL
ASPHD1	253982	genome.wustl.edu	37	16	29912897	29912897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181718.3	+1	validated	p.P202L	1.000	68	0%	36	25%	1	0%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	NULL
FAM65A	79567	genome.wustl.edu	37	16	67575992	67575992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024519.2	+1	validated	p.P435T	0.980	44	0%	54	29.6%	4	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
ENSG00000248612	0	genome.wustl.edu	37	16	84495583	84495583	+	RNA	SNP	T	T	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508094	-1	known	NULL	0.000	155	0%	77	29.9%	0	-	-	-	-	-
TUBB3	10381	genome.wustl.edu	37	16	90001763	90001763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006086.2	+1	validated	p.A302T	1.000	101	0%	27	18.5%	75	36%	possibly_damaging(0.685)	deleterious(0)	deleterious(0.689)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
ABR	29	genome.wustl.edu	37	17	973313	973313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021962.2	-1	reviewed	p.K304N	1.000	57	0%	25	28%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GSG2	83903	genome.wustl.edu	37	17	3629017	3629017	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031965.2	+1	validated	p.D596	0.093	134	0%	146	23.3%	0	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C17orf74	201243	genome.wustl.edu	37	17	7330550	7330550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175734.4	+1	validated	p.R414W	0.000	116	0%	53	35.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
WRAP53	55135	genome.wustl.edu	37	17	7606399	7606399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018081.2	+1	validated	p.P453S	0.864	60	0%	55	40%	78	28.2%	probably_damaging(0.969)	tolerated(0.58)	neutral(0.416)	superfamily_WD40_like
FLII	2314	genome.wustl.edu	37	17	18150566	18150566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002018.2	-1	reviewed	p.R865C	1.000	41	0%	16	31.2%	24	29.1%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
FZD2	2535	genome.wustl.edu	37	17	42635354	42635354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.C100R	1.000	68	0%	28	21.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Frizzled_Cys-rich,HMMPfam_Fz,HMMSmart_FRI
UBE2Z	65264	genome.wustl.edu	37	17	47000242	47000242	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023079.3	+1	validated	p.Y279	0.982	197	0%	206	32.5%	3	0%	-	-	-	NULL
COL1A1	1277	genome.wustl.edu	37	17	48267071	48267071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.A879V	1.000	119	0%	48	27.1%	86	1.1%	unknown(0)	deleterious(0.04)	-	HMMPfam_Collagen
LUC7L3	51747	genome.wustl.edu	37	17	48823115	48823115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006107.3	+1	reviewed	p.R243H	1.000	82	0%	233	33.9%	19	42.1%	unknown(0)	deleterious(0.01)	-	HMMPfam_LUC7
AKAP1	8165	genome.wustl.edu	37	17	55182885	55182885	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003488.3	+1	reviewed	p.L20	0.353	172	0%	54	42.6%	1	0%	-	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56694953	56694953	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198393.2	-1	reviewed	p.L194	0.007	85	0%	135	32.6%	0	-	-	-	-	NULL
DHX40	79665	genome.wustl.edu	37	17	57676190	57676190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024612.4	+1	reviewed	p.I559V	0.990	197	0%	373	23.3%	5	20%	benign(0)	tolerated(1)	-	NULL
LRRC37A3	374819	genome.wustl.edu	37	17	62856332	62856332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199340.2	-1	provisional	p.R1311H	0.002	406	0%	711	29.4%	1	0%	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	NULL
AXIN2	8313	genome.wustl.edu	37	17	63554382	63554382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004655.3	-1	reviewed	p.Q119H	1.000	268	0%	150	29.3%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
EVPL	2125	genome.wustl.edu	37	17	74007958	74007958	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.Y821	0.997	71	0%	67	29.9%	6	66.6%	-	-	-	superfamily_Spectrin repeat
CDH2	1000	genome.wustl.edu	37	18	25565014	25565014	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001792.3	-1	reviewed	p.L720H	1.000	142	0%	152	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NARS	4677	genome.wustl.edu	37	18	55282946	55282946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004539.3	-1	validated	p.R90Q	0.973	401	0%	738	26.7%	10	50%	benign(0.301)	tolerated(0.37)	neutral(0.112)	NULL
SEC11C	90701	genome.wustl.edu	37	18	56823019	56823019	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033280.2	+1	provisional	p.D149	0.876	124	0%	343	27.1%	147	35.3%	-	-	-	superfamily_LexA/Signal peptidase
CPLX4	339302	genome.wustl.edu	37	18	56985553	56985553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181654.3	-1	reviewed	p.Y48H	1.000	304	0%	695	25.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
STAP2	55620	genome.wustl.edu	37	19	4327200	4327200	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017720.2	-1	reviewed	p.A228	0.001	129	0%	140	26.4%	105	41.9%	-	-	-	superfamily_SH2 domain
VAV1	7409	genome.wustl.edu	37	19	6828647	6828647	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005428.2	+1	reviewed	p.C369	0.994	62	0%	58	25.9%	3	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
EMR1	2015	genome.wustl.edu	37	19	6926594	6926594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001974.3	+1	reviewed	p.G735D	0.910	236	0.4%	357	12%	1	0%	probably_damaging(0.97)	tolerated(0.83)	neutral(0.413)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
SMARCA4	6597	genome.wustl.edu	37	19	11106978	11106978	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128849.1	+1	reviewed	p.V561	1.000	100	0%	168	36.3%	9	11.1%	-	-	-	superfamily_SSF52540
MAST1	22983	genome.wustl.edu	37	19	12984586	12984586	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014975.2	+1	validated	p.S1205	0.777	22	0%	21	38.1%	0	-	-	-	-	NULL
ENSG00000225607	0	genome.wustl.edu	37	19	15882852	15882852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412610	-1	known	p.C166F	1.000	150	0%	73	28.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_p450,superfamily_Cytochrome P450
TPM4	7171	genome.wustl.edu	37	19	16178515	16178515	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145160.1	+1	reviewed	p.A27	0.219	131	0%	198	29.3%	0	-	-	-	-	NULL
FAM125A	93343	genome.wustl.edu	37	19	17531144	17531144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138401.2	+1	provisional	p.A38E	0.793	43	0%	29	41.4%	11	18.1%	benign(0.091)	tolerated(0.5)	neutral(0.017)	HMMPfam_DUF2464
GGN	199720	genome.wustl.edu	37	19	38876836	38876836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152657.3	-1	reviewed	p.A356T	0.701	25	0%	23	17.4%	0	-	possibly_damaging(0.484)	tolerated(0.06)	deleterious(0.483)	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394505	52394505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023074.3	-1	validated	p.C295Y	1.000	250	0.4%	333	27.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LILRB2	10288	genome.wustl.edu	37	19	54783330	54783330	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005874.3	-1	reviewed	p.S176	0.000	280	0%	122	22.1%	1	0%	-	-	-	HMMPfam_ig,superfamily_Immunoglobulin
ZSCAN18	65982	genome.wustl.edu	37	19	58596336	58596336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145542.1	-1	validated	p.E473K	0.072	38	0.000	7	0.714	17	52.9%	probably_damaging(0.967)	deleterious(0.05)	deleterious(0.754)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PCNA	5111	genome.wustl.edu	37	20	5100391	5100391	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002592.2	-1	reviewed	p.A18	0.000	66	0%	36	27.8%	23	30.4%	-	-	-	HMMPfam_PCNA_N,superfamily_DNA clamp
BMP2	650	genome.wustl.edu	37	20	6750798	6750798	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001200.2	+1	reviewed	p.L9	1.000	39	0%	11	36.4%	0	-	-	-	-	NULL
RIN2	54453	genome.wustl.edu	37	20	19870220	19870220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000255006	+1	known	p.A41V	0.000	55	0%	74	32.4%	2	50%	benign(0.367)	deleterious(0)	deleterious(0.561)	NULL
NANP	140838	genome.wustl.edu	37	20	25596776	25596776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152667.2	-1	validated	p.G178R	0.731	142	0%	176	12.5%	2	0%	benign(0.37)	tolerated(0.07)	neutral(0.436)	HMMPfam_Hydrolase,superfamily_HAD-like
PPP1R16B	26051	genome.wustl.edu	37	20	37546819	37546819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015568.2	+1	reviewed	p.P405H	0.983	58	0%	32	34.4%	0	-	possibly_damaging(0.46)	tolerated(0.13)	neutral(0.403)	NULL
TIAM1	7074	genome.wustl.edu	37	21	32519250	32519250	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003253.2	-1	validated	p.C1146	0.957	177	0%	234	26.5%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
TTC3	7267	genome.wustl.edu	37	21	38538385	38538385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.R1290Q	0.000	62	0%	76	34.2%	1	0%	benign(0)	tolerated(0.16)	neutral(0.059)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38573792	38573792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.R1999C	0.000	51	0%	48	10.4%	24	25%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
BACE2	25825	genome.wustl.edu	37	21	42613751	42613751	+	Silent	SNP	A	A	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012105.3	+1	reviewed	p.S208	0.715	150	0%	141	28.4%	23	43.4%	-	-	-	HMMPfam_Asp,superfamily_Acid proteases
SLC7A4	6545	genome.wustl.edu	37	22	21385999	21385999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004173.2	-1	validated	p.R35C	0.994	39	0%	14	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PPM1F	9647	genome.wustl.edu	37	22	22280024	22280024	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014634.2	-1	reviewed	p.A301	0.993	59	0%	14	50%	4	0%	-	-	-	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
SF3A1	10291	genome.wustl.edu	37	22	30742337	30742337	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005877.4	-1	reviewed	p.Q119	1.000	153	0%	124	37.1%	6	0%	-	-	-	NULL
MTFP1	51537	genome.wustl.edu	37	22	30823266	30823266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016498.3	+1	validated	p.R102C	1.000	127	0%	35	22.9%	39	38.4%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_MTP18
NCF4	4689	genome.wustl.edu	37	22	37272100	37272100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013416.3	+1	validated	p.A345T	1.000	79	0%	104	17.3%	21	0%	possibly_damaging(0.568)	deleterious(0)	deleterious(0.639)	NULL
MEI1	150365	genome.wustl.edu	37	22	42141067	42141067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152513.3	+1	validated	p.R513G	1.000	129	0%	106	33%	0	-	probably_damaging(0.995)	tolerated(0.17)	deleterious(0.516)	superfamily_ARM repeat
MCAT	27349	genome.wustl.edu	37	22	43529407	43529407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173467.4	-1	reviewed	p.R272H	0.986	83	0%	44	27.3%	47	46.8%	probably_damaging(0.955)	tolerated(0.1)	deleterious(0.685)	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like
XG	7499	genome.wustl.edu	37	X	2712609	2712609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141919.1	+1	reviewed	p.R96H	0.127	78	0%	38	34.2%	18	11.1%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19725011	19725011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031892.2	-1	reviewed	p.E126D	1.000	139	0%	164	26.2%	4	0%	probably_damaging(0.988)	tolerated(0.67)	neutral(0.440)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
MAGEB6	158809	genome.wustl.edu	37	X	26212948	26212948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173523.2	+1	reviewed	p.R329W	0.000	377	0%	529	25.7%	0	-	benign(0.397)	deleterious(0.04)	deleterious(0.476)	HMMPfam_MAGE
DMD	1756	genome.wustl.edu	37	X	32430325	32430325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004011.3	-1	reviewed	p.M1T	0.000	126	0%	286	33.9%	0	-	unknown(0)	-	-	NULL
CASK	8573	genome.wustl.edu	37	X	41419026	41419026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378154	-1	known	p.M581I	0.954	160	0%	180	32.8%	0	-	benign(0.014)	tolerated(0.33)	neutral(0.025)	NULL
PORCN	64840	genome.wustl.edu	37	X	48374136	48374136	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203475.1	+1	reviewed	p.T326	1.000	126	0%	139	35.3%	30	0%	-	-	-	HMMPfam_MBOAT
PPP1R3F	89801	genome.wustl.edu	37	X	49127168	49127168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033215.4	+1	reviewed	p.R279H	0.933	27	0%	11	54.5%	6	50%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_CBM_21
SPIN2B	474343	genome.wustl.edu	37	X	57146627	57146627	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006681.1	-1	validated	p.E146*	1.000	449	0%	834	25.4%	4	25%	-	-	-	HMMPfam_Spin-Ssty
ZXDA	7789	genome.wustl.edu	37	X	57935854	57935854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007156.4	-1	reviewed	p.A334V	0.000	129	0%	60	23.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SNX12	29934	genome.wustl.edu	37	X	70280889	70280889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013346.2	-1	reviewed	p.V156I	1.000	201	0%	130	23.8%	9	0%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70468326	70468326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005096.3	-1	reviewed	p.S596G	1.000	82	0%	81	32.1%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_zf-FCS,HMMSmart_SM00746
TAF1	6872	genome.wustl.edu	37	X	70608189	70608189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.R864W	1.000	74	0%	169	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DACH2	117154	genome.wustl.edu	37	X	85994753	85994753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053281.3	+1	reviewed	p.R370W	0.994	198	0%	281	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101970997	101970997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.E400D	0.772	105	0%	133	34.6%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
HTR2C	3358	genome.wustl.edu	37	X	114082591	114082591	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000868.2	+1	reviewed	p.Y125	0.187	306	0%	698	32.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
RNF113A	7737	genome.wustl.edu	37	X	119005193	119005193	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006978.2	-1	reviewed	p.R128	0.598	199	0%	107	33.6%	13	0%	-	-	-	NULL
RHOXF2	84528	genome.wustl.edu	37	X	119293163	119293163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032498.1	+1	provisional	p.D108N	0.000	176	0%	119	18.5%	0	-	possibly_damaging(0.802)	tolerated(0.56)	neutral(0.308)	NULL
MAGEA3	4102	genome.wustl.edu	37	X	151935504	151935504	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005362.3	-1	reviewed	p.I221	0.007	360	0%	256	30.5%	0	-	-	-	-	HMMPfam_MAGE
ZNF185	7739	genome.wustl.edu	37	X	152128422	152128423	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A0K2-01	TCGA-B5-A0K2-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007150.3	+1	reviewed	p.S531fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
