Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CSDE1	7812	genome.wustl.edu	37	1	115277115	115277115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130523.1	-1	validated	p.M192R	1.000	104	0%	227	43.6%	75	42.6%	possibly_damaging(0.553)	tolerated(1)	neutral(0.189)	NULL
CADM3	57863	genome.wustl.edu	37	1	159163349	159163349	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021189.3	+1	validated	p.H207	0.069	99	0%	211	22.3%	0	-	-	-	-	HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	byCluster	TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33Y	1.000	73	0%	60	50%	57	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CNTN3	5067	genome.wustl.edu	37	3	74474014	74474014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.P146S	1.000	101	0%	177	36.7%	2	100%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SLC41A3	54946	genome.wustl.edu	37	3	125775246	125775246	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008487.1	-1	validated	p.S50	0.003	47	0%	92	40.2%	0	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E545K	1.000	142	0.7%	186	38.2%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
ATP13A4	84239	genome.wustl.edu	37	3	193232504	193232504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032279.2	-1	validated	p.V73M	0.331	56	0%	147	41.5%	0	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37445261	37445261	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144990.1	+1	validated	p.I552fs	1.000	-	-	-	-	-	-	-	-	-	NULL
UBA6	55236	genome.wustl.edu	37	4	68488926	68488926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018227.5	-1	validated	p.F952C	1.000	136	0%	269	37.9%	6	33.3%	benign(0.34)	tolerated(0.78)	neutral(0.108)	HMMPfam_UBA_e1_C
METAP1	23173	genome.wustl.edu	37	4	99978957	99978957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015143.2	+1	validated	p.M329V	1.000	348	0.3%	1038	41.5%	21	52.3%	benign(0.356)	deleterious(0)	deleterious(0.557)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
MANBA	4126	genome.wustl.edu	37	4	103556160	103556160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005908.3	-1	reviewed	p.R734C	0.000	79	0%	69	39.1%	14	57.1%	possibly_damaging(0.771)	tolerated(0.17)	neutral(0.345)	NULL
ACSL6	23305	genome.wustl.edu	37	5	131321105	131321105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009185.1	-1	validated	p.T304M	1.000	94	0%	56	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801
PCDHA12	56137	genome.wustl.edu	37	5	140256371	140256371	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.T438	0.000	47	0%	42	33.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140264051	140264051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.A733V	0.005	30	0%	62	35.5%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140768186	140768186	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.D245	0.000	44	0%	25	36%	0	-	-	-	-	superfamily_Cadherin-like
TINAG	27283	genome.wustl.edu	37	6	54173504	54173504	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014464.3	+1	validated	p.F52	0.985	201	0.5%	1237	40.3%	0	-	-	-	-	NULL
ESR1	2099	genome.wustl.edu	37	6	152382133	152382141	+	In_Frame_Del	DEL	GGAAAATGT	GGAAAATGT	-	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	GGAAAATGT	GGAAAATGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000125.3	+1	reviewed	p.GKC415in_frame_del	1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NPC1L1	29881	genome.wustl.edu	37	7	44555772	44555772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013389.2	-1	reviewed	p.V1209M	1.000	25	0%	34	14.7%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Patched,superfamily_SSF82866
CALN1	83698	genome.wustl.edu	37	7	71252851	71252851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031468.3	-1	validated	p.R232Q	1.000	101	0%	124	37.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92760892	92760892	+	Missense_Mutation	SNP	G	G	A	rs181466556	by1000genomes	TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.R1465C	0.000	85	0%	390	36.2%	9	33.3%	benign(0.294)	tolerated(0.16)	neutral(0.150)	NULL
TMEM55A	55529	genome.wustl.edu	37	8	92030689	92030689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018710.2	-1	validated	p.A139S	1.000	188	0%	397	34.8%	3	0%	possibly_damaging(0.892)	tolerated(0.91)	neutral(0.351)	HMMPfam_Tmemb_55A
PKHD1L1	93035	genome.wustl.edu	37	8	110502266	110502266	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.T3322	0.972	212	0%	214	38.3%	3	33.3%	-	-	-	superfamily_Pectin lyase-like
DNAI1	27019	genome.wustl.edu	37	9	34506738	34506738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012144.2	+1	reviewed	p.V393M	0.009	23	0%	25	56%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMSmart_WD40,superfamily_WD40_like
ORM1	5004	genome.wustl.edu	37	9	117085972	117085972	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000607.2	+1	reviewed	p.S48	0.000	276	0%	418	32.3%	7	71.4%	unknown(0)	deleterious(0)	-	HMMPfam_Lipocalin,superfamily_Calycin
PSMD5	5711	genome.wustl.edu	37	9	123586870	123586870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005047.2	-1	reviewed	p.M303K	1.000	107	0%	158	37.3%	5	20%	possibly_damaging(0.757)	tolerated(0.24)	neutral(0.317)	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
ARHGAP21	57584	genome.wustl.edu	37	10	24908436	24908436	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.P796	0.127	89	0%	176	19.3%	1	0%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692929	89692929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Y138C	1.000	207	0%	381	40.9%	18	33.3%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720771	89720771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R308fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720852	89720852	+	Nonsense_Mutation	SNP	C	C	T	rs121909231	byCluster	TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R335*	1.000	95	0%	252	36.9%	34	41.1%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
OR5P3	120066	genome.wustl.edu	37	11	7846949	7846949	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153445.1	-1	provisional	p.H191fs	0.010	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181950	0	genome.wustl.edu	37	11	55235084	55235084	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314689	+1	known	p.L185	0.004	32	0%	78	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC86	79080	genome.wustl.edu	37	11	60610082	60610082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024098.3	+1	validated	p.E162A	0.995	13	0%	13	38.5%	9	66.6%	probably_damaging(0.959)	tolerated(0.1)	deleterious(0.689)	NULL
FAT3	120114	genome.wustl.edu	37	11	92577802	92577802	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.L3757	0.966	104	0%	48	43.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
LOC643733	643733	genome.wustl.edu	37	11	104778261	104778261	+	RNA	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078449.1	-1	model	NULL	0.842	24	0%	70	42.9%	0	-	-	-	-	-
LRRK2	120892	genome.wustl.edu	37	12	40692960	40692960	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.I1133F	0.998	225	0%	310	41.6%	0	-	possibly_damaging(0.491)	tolerated(0.36)	neutral(0.183)	HMMPfam_LRR_1,superfamily_SSF52058
RPAP3	79657	genome.wustl.edu	37	12	48090102	48090102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024604.2	-1	reviewed	p.V168M	0.951	193	0%	459	48.6%	3	0%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMSmart_SM00028,superfamily_TPR-like
USP44	84101	genome.wustl.edu	37	12	95911951	95911951	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042403.1	-1	validated	p.S707fs	0.001	-	-	-	-	-	-	-	-	-	NULL
UBE3B	89910	genome.wustl.edu	37	12	109924286	109924286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.V118A	1.000	222	0.5%	391	40.4%	3	66.6%	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	NULL
DHX37	57647	genome.wustl.edu	37	12	125434540	125434540	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032656.2	-1	reviewed	p.T1094	0.001	16	0%	10	50%	25	56%	-	-	-	NULL
IL25	64806	genome.wustl.edu	37	14	23842520	23842520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022789.3	+1	reviewed	p.A65S	0.000	44	0%	48	43.8%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_IL17,superfamily_Cystine-knot cytokines
ENSG00000174450	0	genome.wustl.edu	37	15	23685006	23685023	+	Frame_Shift_Del	DEL	ATCTCCTCCTGCCCCCAC	ATCTCCTCCTGCCCCCAC	-	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	ATCTCCTCCTGCCCCCAC	ATCTCCTCCTGCCCCCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312015	-1	known	p.E545fs	0.001:0.001:0.001:0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
SPATA8	145946	genome.wustl.edu	37	15	97327420	97327420	+	Missense_Mutation	SNP	C	C	T	rs74035978	byCluster;byFrequency;by1000genomes	TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173499.3	+1	provisional	p.P43S	0.999	66	0%	44	29.5%	0	-	unknown(0)	-	-	NULL
FAM65A	79567	genome.wustl.edu	37	16	67573993	67573993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024519.2	+1	validated	p.R151H	1.000	45	0%	90	45.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTCF	10664	genome.wustl.edu	37	16	67662323	67662323	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.Y523*	0.825	92	0%	135	38.5%	11	9%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HGS	9146	genome.wustl.edu	37	17	79655784	79655784	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004712.3	+1	provisional	p.A114	1.000	38	0%	22	36.4%	25	36%	-	-	-	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
TMEM241	85019	genome.wustl.edu	37	18	20964996	20964996	+	Silent	SNP	A	A	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032933.4	-1	validated	p.A105	0.999	148	0%	447	45.2%	0	-	-	-	-	superfamily_Multidrug resistance efflux transporter EmrE
ZNF556	80032	genome.wustl.edu	37	19	2876166	2876166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024967.1	+1	provisional	p.Q69R	0.049	146	0%	114	42.1%	0	-	possibly_damaging(0.484)	tolerated(0.19)	neutral(0.210)	NULL
MUC16	94025	genome.wustl.edu	37	19	9048229	9048229	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.G11134	0.001	92	0%	592	24.7%	0	-	-	-	-	NULL
ZNF470	388566	genome.wustl.edu	37	19	57085955	57085955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446235	+1	known	p.S85P	0.031	176	0%	220	33.2%	0	-	-	-	-	HMMSmart_SM00349
BPIFB4	149954	genome.wustl.edu	37	20	31672739	31672739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182519.2	+1	validated	p.R240Q	1.000	42	0%	60	43.3%	0	-	possibly_damaging(0.704)	tolerated(0.23)	neutral(0.295)	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
POLA1	5422	genome.wustl.edu	37	X	24745999	24745999	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.V538	1.000	189	0%	452	40.3%	1	0%	-	-	-	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
POLA1	5422	genome.wustl.edu	37	X	25014019	25014019	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016937.3	+1	reviewed	p.S1447	0.006	133	0%	144	38.2%	8	0%	-	-	-	HMMPfam_zf-DNA_Pol
FAM133A	286499	genome.wustl.edu	37	X	92964855	92964855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173698.2	+1	validated	p.T146M	0.103	65	0%	198	35.9%	0	-	unknown(0)	tolerated(0.32)	-	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102005024	102005024	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142524.1	+1	validated	p.V367	1.000	112	0%	185	36.8%	0	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
NRK	203447	genome.wustl.edu	37	X	105189996	105189996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.L1398M	1.000	136	0%	223	42.6%	0	-	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	HMMPfam_CNH,HMMSmart_SM00036
GPR101	83550	genome.wustl.edu	37	X	136112567	136112567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054021.1	-1	validated	p.V423M	0.005	104	0%	149	35.6%	0	-	benign(0.286)	deleterious(0)	deleterious(0.532)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MECP2	4204	genome.wustl.edu	37	X	153297785	153297785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110792.1	-1	reviewed	p.R96W	1.000	82	0%	41	36.6%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNA-binding_integrase-type
