Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MEGF6	1953	genome.wustl.edu	37	1	3421802	3421802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001409.3	-1	validated	p.A720T	0.125	20	0%	15	26.7%	7	28.5%	possibly_damaging(0.666)	tolerated(0.11)	deleterious(0.508)	HMMSmart_SM00180,HMMSmart_SM00181
NPHP4	261734	genome.wustl.edu	37	1	5924553	5924553	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015102.2	-1	reviewed	p.L1281	0.918	32	0%	31	38.7%	13	46.1%	-	-	-	NULL
RNF207	388591	genome.wustl.edu	37	1	6271124	6271124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207396.2	+1	validated	p.P352L	1.000	50	0%	18	33.3%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NOL9	79707	genome.wustl.edu	37	1	6609749	6609749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024654.4	-1	validated	p.R209H	0.000	189	0%	260	27.3%	6	16.6%	possibly_damaging(0.544)	tolerated(0.4)	neutral(0.201)	NULL
C1orf127	148345	genome.wustl.edu	37	1	11017740	11017740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377008	-1	known	p.Y60C	0.005	59	0%	66	30.3%	0	-	probably_damaging(0.979)	tolerated(0.14)	deleterious(0.671)	NULL
MTOR	2475	genome.wustl.edu	37	1	11188078	11188078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.V2006I	1.000	221	0%	236	28.8%	26	50%	benign(0.363)	deleterious(0)	deleterious(0.560)	superfamily_ARM-type_fold
HNRNPCL1	343069	genome.wustl.edu	37	1	12907644	12907644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013631.1	-1	validated	p.R167W	0.895	336	0%	332	24.1%	0	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
ZBTB17	7709	genome.wustl.edu	37	1	16269907	16269907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003443.2	-1	validated	p.R562C	1.000	43	0%	65	36.9%	63	41.2%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ACTL8	81569	genome.wustl.edu	37	1	18152842	18152842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030812.2	+1	validated	p.R310H	0.986	76	0%	72	26.4%	1	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
UBR4	23352	genome.wustl.edu	37	1	19493671	19493673	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.L1319in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
KIAA0090	23065	genome.wustl.edu	37	1	19564624	19564624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015047.1	-1	predicted	p.A367T	0.000	232	0%	252	30.2%	34	47%	benign(0)	tolerated(0.78)	neutral(0.001)	superfamily_Quinoprotein alcohol dehydrogenase-like
TMCO4	255104	genome.wustl.edu	37	1	20027315	20027315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181719.4	-1	validated	p.H443R	1.000	103	0%	111	31.5%	38	50%	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_DUF726
HSPG2	3339	genome.wustl.edu	37	1	22202361	22202361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.R1060W	0.995	49	0%	38	36.8%	11	0%	benign(0.004)	tolerated(0.09)	neutral(0.296)	HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281
HSPG2	3339	genome.wustl.edu	37	1	22222432	22222432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.S76N	0.997	84	0%	97	33%	6	0%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
TCEB3	6924	genome.wustl.edu	37	1	24077927	24077929	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003198.2	+1	reviewed	p.E305in_frame_del	1.000:1.000:0.993	-	-	-	-	-	-	-	-	-	NULL
C1orf201	90529	genome.wustl.edu	37	1	24727851	24727851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437986	-1	known	p.R10C	0.000	608	0%	764	28.9%	5	40%	benign(0.278)	deleterious(0.01)	neutral(0.435)	NULL
RPS6KA1	6195	genome.wustl.edu	37	1	26898372	26898372	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006665.1	+1	reviewed	p.C604	0.948	76	0%	56	33.9%	70	35.7%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
AHDC1	27245	genome.wustl.edu	37	1	27874473	27874473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029882.2	-1	validated	p.H1385R	1.000	20	0%	41	39%	14	50%	possibly_damaging(0.727)	tolerated(0.08)	deleterious(0.565)	NULL
SFPQ	6421	genome.wustl.edu	37	1	35652681	35652683	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005066.2	-1	validated	p.G639in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
THRAP3	9967	genome.wustl.edu	37	1	36752570	36752570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.R247*	1.000	30	0%	50	24%	25	12%	-	-	-	NULL
THRAP3	9967	genome.wustl.edu	37	1	36769491	36769491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.R914Q	1.000	167	0%	181	27.1%	31	74.1%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
GJA9	81025	genome.wustl.edu	37	1	39340512	39340512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030772.3	-1	provisional	p.R420Q	0.001	350	0%	382	31.9%	0	-	possibly_damaging(0.802)	deleterious(0)	deleterious(0.746)	NULL
TRIT1	54802	genome.wustl.edu	37	1	40313667	40313667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017646.4	-1	validated	p.S269L	0.024	400	0%	384	26.8%	12	33.3%	benign(0.03)	tolerated(0.28)	neutral(0.033)	HMMPfam_IPPT,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIT1	54802	genome.wustl.edu	37	1	40318439	40318439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017646.4	-1	validated	p.A175V	1.000	430	0%	452	33%	14	21.4%	possibly_damaging(0.926)	tolerated(0.09)	deleterious(0.671)	HMMPfam_IPPT,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZMPSTE24	10269	genome.wustl.edu	37	1	40747033	40747033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005857.3	+1	reviewed	p.H263R	1.000	266	0%	306	27.5%	42	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M48
SLC2A1	6513	genome.wustl.edu	37	1	43408960	43408960	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006516.2	-1	reviewed	p.G17	1.000	82	0%	65	27.7%	57	40.3%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
ST3GAL3	6487	genome.wustl.edu	37	1	44365285	44365285	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174963.2	+1	reviewed	p.P279	0.006	133	0%	109	25.7%	7	14.2%	-	-	-	HMMPfam_Glyco_transf_29
KLF17	128209	genome.wustl.edu	37	1	44595828	44595828	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173484.3	+1	validated	p.T295	1.000	43	0%	72	30.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TESK2	10420	genome.wustl.edu	37	1	45923406	45923406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007170.2	-1	reviewed	p.R18C	1.000	281	0%	312	34.3%	1	100%	benign(0.091)	deleterious(0)	neutral(0.451)	NULL
GPBP1L1	60313	genome.wustl.edu	37	1	46093977	46093977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021639.4	-1	validated	p.D459G	0.998	286	0%	320	33.1%	103	37.8%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
IPP	3652	genome.wustl.edu	37	1	46184896	46184897	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005897.2	-1	reviewed	p.Y388fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SPATA6	54558	genome.wustl.edu	37	1	48821391	48821391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019073.1	-1	provisional	p.R382L	1.000	415	0%	371	32.3%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SPATA6	54558	genome.wustl.edu	37	1	48877138	48877138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019073.1	-1	provisional	p.R135*	0.997	238	0.8%	201	29.4%	4	0%	-	-	-	NULL
PCSK9	255738	genome.wustl.edu	37	1	55527158	55527158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174936.2	+1	reviewed	p.A598T	0.966	44	0%	36	33.3%	45	57.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100288348	100288348	genome.wustl.edu	37	1	57044746	57044746	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342086.1	+1	model	p.P318	0.528	42	0%	40	32.5%	2	0%	-	-	-	NULL
FGGY	55277	genome.wustl.edu	37	1	59811984	59811984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113411.1	+1	validated	p.N127D	1.000	279	0.4%	236	32.2%	12	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_FGGY_N,superfamily_SSF53067
JAK1	3716	genome.wustl.edu	37	1	65301899	65301899	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	e22-1	1.000	122	0%	136	31.6%	0	-	-	-	-	-
WDR78	79819	genome.wustl.edu	37	1	67301445	67301445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024763.4	-1	validated	p.Y533H	1.000	221	0%	226	28.3%	7	57.1%	possibly_damaging(0.625)	deleterious(0)	deleterious(0.662)	HMMSmart_SM00320,superfamily_WD40 repeat-like
FUBP1	8880	genome.wustl.edu	37	1	78426085	78426085	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003902.3	-1	reviewed	p.P480	1.000	108	0%	77	29.9%	107	44.8%	-	-	-	NULL
SYDE2	84144	genome.wustl.edu	37	1	85655898	85655898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.H428R	0.166	304	0%	348	28.2%	3	66.6%	benign(0)	-	-	NULL
COL24A1	255631	genome.wustl.edu	37	1	86590828	86590828	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.L397	0.090	422	0%	391	32%	1	0%	-	-	-	NULL
CLCA4	22802	genome.wustl.edu	37	1	87045123	87045123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012128.3	+1	reviewed	p.G737C	1.000	176	0%	236	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GBP2	2634	genome.wustl.edu	37	1	89579795	89579795	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004120.3	-1	reviewed	p.L351	0.995	403	0%	377	30.8%	72	11.1%	-	-	-	HMMPfam_GBP_C,superfamily_GBP
PRMT6	55170	genome.wustl.edu	37	1	107599955	107599956	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018137.2	+1	validated	p.W148fs	0.997:1.000	-	-	-	-	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CELSR2	1952	genome.wustl.edu	37	1	109805837	109805837	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.D1594	0.008	29	0%	29	37.9%	14	28.5%	-	-	-	PatternScan_ASX_HYDROXYL,HMMPfam_EGF,HMMSmart_EGF
CD53	963	genome.wustl.edu	37	1	111434036	111434036	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000560.3	+1	reviewed	p.G2	1.000	647	0.3%	616	29.2%	37	0%	-	-	-	NULL
CASQ2	845	genome.wustl.edu	37	1	116243969	116243969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001232.3	-1	reviewed	p.V365M	1.000	372	0.3%	446	31.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calsequestrin,superfamily_Thioredoxin-like,PatternScan_CALSEQUESTRIN_2
CD101	9398	genome.wustl.edu	37	1	117556348	117556348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004258.3	+1	validated	p.G388C	0.583	87	0%	82	36.6%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMSmart_IG,superfamily_SSF48726
HAO2	51179	genome.wustl.edu	37	1	119923800	119923800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005783.1	+1	reviewed	p.D31G	0.996	438	0%	475	32%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
PHGDH	26227	genome.wustl.edu	37	1	120269703	120269703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006623.3	+1	reviewed	p.R163Q	1.000	142	0.7%	139	33.8%	37	40.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_1,superfamily_NAD(P)-binding Rossmann-fold domains
BCL9	607	genome.wustl.edu	37	1	147092536	147092536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.G859C	0.991	85	0%	62	27.4%	21	47.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ADAMTSL4	54507	genome.wustl.edu	37	1	150530610	150530610	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019032.4	+1	reviewed	p.G789	0.150	26	0%	24	50%	5	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SEMA6C	10500	genome.wustl.edu	37	1	151108983	151108983	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030913.4	-1	reviewed	p.E349	1.000	118	0%	125	10.4%	9	22.2%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ZNF687	57592	genome.wustl.edu	37	1	151260130	151260130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020832.1	+1	provisional	p.R455W	0.956	63	0%	64	37.5%	7	57.1%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
CGN	57530	genome.wustl.edu	37	1	151502568	151502568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	p.R764W	1.000	127	0%	114	29.8%	21	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CELF3	11189	genome.wustl.edu	37	1	151680079	151680079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007185.4	-1	reviewed	p.L226I	1.000	22	0%	22	36.4%	0	-	benign(0.004)	tolerated(0.45)	neutral(0.012)	NULL
RPTN	126638	genome.wustl.edu	37	1	152128316	152128316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122965.1	-1	validated	p.R420Q	0.000	1221	0.1%	1357	32.1%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154988224	154988224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015872.2	+1	validated	p.R363H	1.000	25	0%	20	20%	75	54.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ASH1L	55870	genome.wustl.edu	37	1	155490894	155490894	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.K139	0.999	260	0.4%	287	33.4%	2	0%	-	-	-	NULL
LMNA	4000	genome.wustl.edu	37	1	156084974	156084974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170707.2	+1	reviewed	p.R89S	1.000	19	0%	26	23.1%	170	32.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KIRREL	55243	genome.wustl.edu	37	1	158063475	158063475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.L548F	1.000	64	0%	86	38.4%	5	40%	possibly_damaging(0.61)	tolerated(0.15)	neutral(0.453)	NULL
SPTA1	6708	genome.wustl.edu	37	1	158592822	158592822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.S2024L	0.991	314	0.3%	268	34.3%	0	-	possibly_damaging(0.858)	tolerated(0.08)	deleterious(0.631)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ADAMTS4	9507	genome.wustl.edu	37	1	161165353	161165353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005099.4	-1	reviewed	p.R388H	1.000	153	0%	175	29.1%	6	0%	benign(0.37)	tolerated(0.57)	neutral(0.123)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ATF6	22926	genome.wustl.edu	37	1	161928251	161928251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.G607V	1.000	193	0%	223	33.2%	65	40%	possibly_damaging(0.915)	tolerated(0.08)	deleterious(0.666)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177916986	177916986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033127.2	-1	validated	p.A546V	0.145	93	0%	99	32.3%	1	0%	benign(0.015)	tolerated(0.09)	neutral(0.297)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177930020	177930020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033127.2	-1	validated	p.P281H	1.000	122	0%	105	26.7%	4	25%	probably_damaging(0.974)	tolerated(0.54)	neutral(0.423)	NULL
STX6	10228	genome.wustl.edu	37	1	180959176	180959176	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005819.4	-1	validated	p.R145*	0.843	87	0%	84	33.3%	17	29.4%	-	-	-	NULL
RGS1	5996	genome.wustl.edu	37	1	192548289	192548289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002922.3	+1	reviewed	p.R156Q	1.000	271	0%	269	30.5%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
TROVE2	6738	genome.wustl.edu	37	1	193038302	193038302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004600.5	+1	validated	p.G40S	1.000	224	0.4%	221	32.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TROVE
CFHR3	10878	genome.wustl.edu	37	1	196749088	196749088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021023.5	+1	reviewed	p.R139G	0.019	227	0.4%	175	30.3%	0	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197072813	197072813	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R1856	0.332	289	0%	264	28.4%	4	75%	-	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEK7	140609	genome.wustl.edu	37	1	198248101	198248101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133494.2	+1	validated	p.V167M	1.000	363	0%	338	26.3%	7	28.5%	benign(0.192)	deleterious(0.01)	neutral(0.424)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
TMEM9	252839	genome.wustl.edu	37	1	201104900	201104900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016456.3	-1	validated	p.P148L	0.851	45	0%	32	43.8%	348	40.2%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_Tmemb_9
IPO9	55705	genome.wustl.edu	37	1	201840306	201840306	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018085.4	+1	validated	p.F809	0.863	324	0%	383	32.1%	46	56.5%	-	-	-	superfamily_ARM repeat
KDM5B	10765	genome.wustl.edu	37	1	202702931	202702931	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.S1169	0.006	114	0.9%	101	34.7%	35	45.7%	-	-	-	superfamily_FYVE/PHD zinc finger
PPFIA4	8497	genome.wustl.edu	37	1	203024599	203024599	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015053.1	+1	validated	p.A117	0.000	123	0%	133	36.1%	2	0%	-	-	-	NULL
CNTN2	6900	genome.wustl.edu	37	1	205041160	205041160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005076.2	+1	reviewed	p.G877D	1.000	72	0%	78	44.9%	0	-	benign(0.199)	deleterious(0.04)	neutral(0.368)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NUAK2	81788	genome.wustl.edu	37	1	205273356	205273356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030952.1	-1	provisional	p.R370H	1.000	110	0%	107	38.3%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDK18	5129	genome.wustl.edu	37	1	205494313	205494313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212503.2	+1	validated	p.K179R	1.000	430	0.2%	490	30%	16	25%	possibly_damaging(0.847)	deleterious(0.02)	deleterious(0.708)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FCAMR	83953	genome.wustl.edu	37	1	207140428	207140428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122979.2	-1	validated	p.M46I	0.029	185	0%	171	24%	0	-	benign(0.01)	tolerated(0.38)	neutral(0.018)	NULL
CR1	1378	genome.wustl.edu	37	1	207760763	207760763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000651.4	+1	reviewed	p.A1855T	0.861	600	0%	534	28.5%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
LAMB3	3914	genome.wustl.edu	37	1	209799108	209799108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.A621T	0.921	58	0%	41	24.4%	60	41.6%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
USH2A	7399	genome.wustl.edu	37	1	216369979	216369979	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.V1389	0.000	598	0%	553	31.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
TLR5	7100	genome.wustl.edu	37	1	223285392	223285392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003268.5	-1	reviewed	p.A328T	0.023	126	0%	138	31.9%	1	100%	benign(0.018)	tolerated(0.51)	neutral(0.009)	HMMPfam_LRR_1,superfamily_SSF52058
NVL	4931	genome.wustl.edu	37	1	224437993	224437993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002533.2	-1	validated	p.P737L	1.000	148	0%	120	35.8%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225306929	225306929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.R1367C	0.994	112	0%	117	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
SNAP47	116841	genome.wustl.edu	37	1	227935738	227935738	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426344	+1	known	p.A137V	1.000	42	0%	43	34.9%	21	28.5%	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228527686	228527686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.V5767M	1.000	118	0%	125	28.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ACTA1	58	genome.wustl.edu	37	1	229568069	229568069	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100.3	-1	reviewed	p.T188	0.159	46	2.2%	28	32.1%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
GNPAT	8443	genome.wustl.edu	37	1	231411230	231411230	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014236.3	+1	reviewed	p.V641	0.017	273	0%	327	30%	97	44.3%	-	-	-	NULL
KIAA1804	84451	genome.wustl.edu	37	1	233482193	233482193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032435.2	+1	validated	p.L271I	0.996	199	0%	198	30.3%	1	0%	benign(0.135)	tolerated(1)	neutral(0.011)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NLRP3	114548	genome.wustl.edu	37	1	247587513	247587513	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079821.2	+1	reviewed	p.L256	0.167	77	0%	77	31.2%	0	-	-	-	-	HMMPfam_NACHT
OR14K1	343170	genome.wustl.edu	37	1	247901977	247901977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000283225	+1	known	p.L21I	0.005	186	0%	162	27.8%	0	-	possibly_damaging(0.929)	deleterious(0.05)	deleterious(0.722)	superfamily_SSF81321
MYT1L	23040	genome.wustl.edu	37	2	1926389	1926389	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.R384	1.000	60	0%	84	34.5%	0	-	-	-	-	NULL
COLEC11	78989	genome.wustl.edu	37	2	3691462	3691462	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.A190	0.400	34	0%	22	36.4%	7	14.2%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
RDH14	57665	genome.wustl.edu	37	2	18737042	18737042	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020905.3	-1	validated	p.N142	0.294	112	0%	127	33.1%	19	47.3%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
WDR35	57539	genome.wustl.edu	37	2	20131131	20131131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006657.1	-1	reviewed	p.R966C	1.000	719	0%	699	31.2%	5	60%	possibly_damaging(0.574)	tolerated(0.09)	deleterious(0.493)	NULL
APOB	338	genome.wustl.edu	37	2	21238249	21238249	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.W1167*	0.973	247	0%	264	26.5%	0	-	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21256187	21256187	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.L370	1.000	246	0%	264	31.4%	0	-	-	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain
KLHL29	114818	genome.wustl.edu	37	2	23785144	23785144	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486442	+1	known	p.T26	0.913	11	0%	13	30.8%	0	-	-	-	-	NULL
LOC100289053	100289053	genome.wustl.edu	37	2	25610244	25610244	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342219.1	+1	model	e1+1	0.999	107	0%	108	25.9%	86	47.6%	benign(0.057)	deleterious(0.02)	neutral(0.387)	-
ASXL2	55252	genome.wustl.edu	37	2	25965347	25965347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018263.4	-1	validated	p.E1287K	1.000	146	0%	142	27.5%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
OTOF	9381	genome.wustl.edu	37	2	26683822	26683822	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.T1870	0.104	52	0%	33	36.4%	0	-	-	-	-	NULL
KCNK3	3777	genome.wustl.edu	37	2	26951104	26951104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002246.2	+1	reviewed	p.A285T	0.997	11	0%	10	50%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
CAD	790	genome.wustl.edu	37	2	27464928	27464928	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428460	+1	known	p.C47Y	1.000	12	0%	24	37.5%	30	56.6%	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N
PPM1G	5496	genome.wustl.edu	37	2	27606867	27606867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177983.1	-1	reviewed	p.E306D	0.993	560	1.1%	635	32.6%	215	40.4%	possibly_damaging(0.806)	tolerated(0.49)	neutral(0.314)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PLB1	151056	genome.wustl.edu	37	2	28855831	28855833	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153021.4	+1	validated	p.F1343in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
ALK	238	genome.wustl.edu	37	2	29416647	29416647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.R1436C	0.009	79	0%	61	27.9%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
XDH	7498	genome.wustl.edu	37	2	31589807	31589807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	p.I751V	1.000	202	0%	202	23.3%	4	50%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
RASGRP3	25780	genome.wustl.edu	37	2	33784046	33784046	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139488.1	+1	validated	p.T671	0.000	59	0%	79	27.8%	3	0%	-	-	-	NULL
FSHR	2492	genome.wustl.edu	37	2	49190481	49190481	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000145.3	-1	reviewed	p.G493	0.999	91	0%	124	12.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM161A	84140	genome.wustl.edu	37	2	62067622	62067622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032180.2	-1	validated	p.S173P	0.810	380	0.3%	377	31.8%	2	50%	possibly_damaging(0.925)	tolerated(0.2)	neutral(0.422)	NULL
OTX1	5013	genome.wustl.edu	37	2	63283100	63283100	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014562.2	+1	reviewed	p.P238	0.990	49	0%	49	30.6%	5	80%	-	-	-	HMMPfam_TF_Otx
ENSG00000199460	0	genome.wustl.edu	37	2	69410113	69410115	+	RNA	DEL	AAA	AAA	-	rs71864303		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362590	+1	novel	NULL	0.023:0.018:0.019	-	-	-	-	-	-	-	-	-	-
GFPT1	2673	genome.wustl.edu	37	2	69569382	69569382	+	Splice_Site	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002056.2	-1	reviewed	e12-1	1.000	216	0%	207	32.4%	1	100%	-	-	-	-
ANKRD53	79998	genome.wustl.edu	37	2	71206359	71206359	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115116.1	+1	validated	p.I101	0.001	30	0%	15	33.3%	1	0%	-	-	-	NULL
DYSF	8291	genome.wustl.edu	37	2	71742825	71742825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.A278T	0.937	112	0%	116	35.3%	2	0%	possibly_damaging(0.813)	tolerated(0.08)	deleterious(0.607)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CYP26B1	56603	genome.wustl.edu	37	2	72362404	72362404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019885.2	-1	reviewed	p.M192V	1.000	50	0%	52	13.5%	1	0%	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_p450,superfamily_Cytochrome_P450
ALMS1	7840	genome.wustl.edu	37	2	73675354	73675354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.T566I	0.002	143	0.7%	141	31.2%	3	0%	benign(0.006)	tolerated(0.64)	neutral(0.003)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73678634	73678634	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.V1659	0.000	94	0%	67	16.4%	0	-	-	-	-	NULL
SLC4A5	57835	genome.wustl.edu	37	2	74483009	74483009	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021196.3	-1	reviewed	p.N306	0.935	113	0%	133	30.8%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
DNAH6	1768	genome.wustl.edu	37	2	84777063	84777063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.T456M	0.902	312	0.6%	250	29.6%	0	-	possibly_damaging(0.937)	tolerated(0.09)	deleterious(0.679)	NULL
RETSAT	54884	genome.wustl.edu	37	2	85570844	85570844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449375	-1	known	p.L326Q	0.994	130	0%	136	14%	49	61.2%	-	-	-	superfamily_FAD/NAD(P)-binding domain
FAHD2A	51011	genome.wustl.edu	37	2	96078441	96078441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016044.2	+1	validated	p.P271S	1.000	271	0%	269	26.8%	43	34.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel
SNRNP200	23020	genome.wustl.edu	37	2	96949563	96949563	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014014.3	-1	reviewed	p.E1524	1.000	145	0%	168	38.1%	143	40.5%	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARID5A	10865	genome.wustl.edu	37	2	97217956	97217956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212481.1	+1	validated	p.R564H	1.000	42	0%	31	35.5%	59	13.5%	probably_damaging(0.993)	tolerated(0.1)	deleterious(0.736)	NULL
FER1L5	90342	genome.wustl.edu	37	2	97364482	97364483	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113382.1	+1	provisional	p.E1507fs	0.005:0.006	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ACTR1B	10120	genome.wustl.edu	37	2	98275067	98275067	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005735.3	-1	reviewed	p.S160	0.071	226	0%	183	33.3%	58	51.7%	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
TMEM131	23505	genome.wustl.edu	37	2	98504570	98504570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.R102W	1.000	316	0%	347	29.7%	6	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
REV1	51455	genome.wustl.edu	37	2	100019264	100019264	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016316.2	-1	reviewed	e20-1	0.970	293	0%	304	28.9%	0	-	-	-	-	-
C2orf40	84417	genome.wustl.edu	37	2	106690408	106690408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032411.2	+1	validated	p.L65P	0.998	138	0%	148	16.9%	1	100%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
ST6GAL2	84620	genome.wustl.edu	37	2	107449046	107449046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142351.1	-1	validated	p.A373V	1.000	213	0%	197	28.4%	1	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase
GCC2	9648	genome.wustl.edu	37	2	109104200	109104200	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.R1326*	1.000	233	0.4%	251	36.7%	8	37.5%	-	-	-	NULL
NPHP1	4867	genome.wustl.edu	37	2	110907760	110907760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000272.3	-1	reviewed	p.Q442R	1.000	730	0%	619	31%	2	50%	benign(0)	tolerated(0.89)	-	NULL
SLC20A1	6574	genome.wustl.edu	37	2	113404706	113404706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005415.3	+1	provisional	p.L101M	0.017	456	0%	534	31.1%	23	39.1%	benign(0.204)	tolerated(0.24)	neutral(0.057)	HMMPfam_PHO4
C1QL2	165257	genome.wustl.edu	37	2	119914554	119914554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182528.3	-1	validated	p.R230W	1.000	96	0%	91	25.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
RAB3GAP1	22930	genome.wustl.edu	37	2	135883770	135883770	+	Missense_Mutation	SNP	A	A	G	rs148190655	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012233.2	+1	reviewed	p.T284A	1.000	722	0%	628	29.6%	12	33.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152236046	152236048	+	In_Frame_Del	DEL	AAA	AAA	-	rs71403164	byCluster	TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	p.*278in_frame_del	0.961:0.953	-	-	-	-	-	-	-	-	-	NULL
RIF1	55183	genome.wustl.edu	37	2	152293487	152293487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.A448T	1.000	117	0%	124	30.6%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TANC1	85461	genome.wustl.edu	37	2	160035451	160035451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.A763T	1.000	70	0%	90	32.2%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166245396	166245396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.M1694V	1.000	649	0%	721	33.6%	1	100%	benign(0.046)	tolerated(0.53)	neutral(0.010)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN1A	6323	genome.wustl.edu	37	2	166900295	166900295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.S643G	1.000	264	0%	265	29.4%	0	-	probably_damaging(0.993)	tolerated(0.1)	deleterious(0.736)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167263138	167263138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.T1334I	0.004	25	0%	41	31.7%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LRP2	4036	genome.wustl.edu	37	2	170099516	170099516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R1206H	0.021	315	0%	361	34.1%	0	-	benign(0.004)	tolerated(0.31)	neutral(0.027)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
GORASP2	26003	genome.wustl.edu	37	2	171822351	171822351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015530.3	+1	reviewed	p.P357H	1.000	392	0%	418	29.4%	267	43%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_GRASP55_65
HOXD3	3232	genome.wustl.edu	37	2	177036967	177036967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006898.4	+1	reviewed	p.R422*	1.000	34	0%	34	29.4%	1	0%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179398630	179398630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R31668C	0.916	303	0.3%	281	27.4%	0	-	probably_damaging(0.998)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179413566	179413566	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.Q28361R	0.970	336	0%	364	30.8%	2	100%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179427977	179427977	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.G25058*	1.000	159	0.6%	167	34.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179441848	179441848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.I20502F	0.995	215	0%	199	25.1%	3	100%	probably_damaging(0.991)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179598099	179598099	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Y4063	1.000	277	0.4%	208	31.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179606092	179606092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.F3786fs	0.959	-	-	-	-	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179634486	179634488	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.I2940in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179659829	179659829	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.S355	0.014	207	0%	197	29.4%	0	-	-	-	-	NULL
WDR75	84128	genome.wustl.edu	37	2	190334122	190334122	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032168.1	+1	provisional	p.S592	0.970	515	0%	510	23.5%	53	52.8%	-	-	-	superfamily_WD40_like
STAT1	6772	genome.wustl.edu	37	2	191849107	191849107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007315.3	-1	reviewed	p.V426I	1.000	218	0%	257	33.5%	149	7.3%	benign(0.012)	deleterious(0.02)	neutral(0.384)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
STAT1	6772	genome.wustl.edu	37	2	191851587	191851587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007315.3	-1	reviewed	p.R405Q	1.000	410	0%	285	29.5%	123	5.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
DNAH7	56171	genome.wustl.edu	37	2	196729201	196729201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.Q2393R	1.000	315	0%	261	27.2%	0	-	possibly_damaging(0.447)	tolerated(0.78)	neutral(0.147)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC150	284992	genome.wustl.edu	37	2	197537074	197537074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431807	+1	known	p.C129Y	0.027	266	0%	257	28%	1	0%	-	-	-	NULL
SGOL2	151246	genome.wustl.edu	37	2	201436414	201436414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.G449C	0.000	125	0%	157	26.8%	7	71.4%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
ALS2CR12	130540	genome.wustl.edu	37	2	202211323	202211323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139163.2	-1	validated	p.M104V	1.000	243	0%	224	23.7%	0	-	benign(0.125)	tolerated(0.08)	neutral(0.310)	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202357911	202357911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439140	-1	known	p.S1051R	0.000	152	0%	103	24.3%	0	-	possibly_damaging(0.55)	-	-	NULL
NBEAL1	65065	genome.wustl.edu	37	2	203990780	203990780	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114132.1	+1	validated	p.S954	0.998	339	0%	394	35%	1	100%	-	-	-	NULL
DYTN	391475	genome.wustl.edu	37	2	207528048	207528048	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.S404	0.000	257	0.4%	266	30.5%	0	-	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215798868	215798868	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.L2538	1.000	414	0%	392	34.2%	2	50%	-	-	-	NULL
ZNF142	7701	genome.wustl.edu	37	2	219521152	219521152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.M1V	0.853	116	0%	135	25.2%	4	50%	benign(0.258)	deleterious(0)	deleterious(0.472)	NULL
SLC16A14	151473	genome.wustl.edu	37	2	230902145	230902145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152527.4	-1	validated	p.R495Q	0.251	341	0%	387	27.6%	2	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
B3GNT7	93010	genome.wustl.edu	37	2	232262880	232262880	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145236.2	+1	validated	p.R150	0.126	15	0%	18	33.3%	7	42.8%	-	-	-	HMMPfam_Galactosyl_T
NGEF	25791	genome.wustl.edu	37	2	233759599	233759599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.A286T	1.000	58	1.7%	35	25.7%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
UGT1A7	54577	genome.wustl.edu	37	2	234590845	234590845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019077.2	+1	reviewed	p.R88W	0.000	254	0.4%	317	30.6%	0	-	possibly_damaging(0.905)	deleterious(0.02)	deleterious(0.742)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
RAB17	64284	genome.wustl.edu	37	2	238486722	238486724	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022449.3	-1	validated	p.E78in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ESPNL	339768	genome.wustl.edu	37	2	239037366	239037366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194312.2	+1	validated	p.A412T	0.000	23	0%	14	35.7%	0	-	benign(0.06)	tolerated(0.08)	neutral(0.304)	NULL
KLHL30	377007	genome.wustl.edu	37	2	239054442	239054442	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198582.3	+1	validated	p.A355	0.005	31	0%	31	25.8%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
AQP12A	375318	genome.wustl.edu	37	2	241631498	241631498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198998.1	+1	provisional	p.T44M	0.247	94	0%	57	26.3%	0	-	benign(0.002)	tolerated(0.39)	neutral(0.016)	superfamily_MIP
SEPT2	4735	genome.wustl.edu	37	2	242289575	242289575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008491.1	+1	validated	p.G358R	1.000	97	0%	125	28.8%	131	37.4%	unknown(0)	deleterious(0)	-	NULL
CXXC11	285093	genome.wustl.edu	37	2	242815252	242815253	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173821.2	+1	validated	p.A516fs	0.003:0.002	-	-	-	-	-	-	-	-	-	NULL
C3orf32	51066	genome.wustl.edu	37	3	8661620	8661620	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015931.1	-1	predicted	p.G332	0.989	187	0%	178	29.2%	2	0%	-	-	-	NULL
LOC100289441	100289441	genome.wustl.edu	37	3	9986095	9986095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342359.1	-1	model	p.S35R	0.966	210	0.5%	187	27.3%	59	45.7%	-	-	-	NULL
GHRLOS2	84657	genome.wustl.edu	37	3	10326600	10326600	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026829.1	+1	validated	NULL	0.000	98	0%	132	37.1%	1	0%	-	-	-	-
SLC6A11	6538	genome.wustl.edu	37	3	10979977	10979977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014229.1	+1	provisional	p.M596I	1.000	219	0%	177	38.4%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
IQSEC1	9922	genome.wustl.edu	37	3	12963667	12963667	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450726	-1	known	p.C617R	0.311	161	0%	121	17.4%	6	0%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
OXNAD1	92106	genome.wustl.edu	37	3	16343266	16343266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138381.2	+1	validated	p.R189Q	1.000	300	0%	354	31.6%	9	11.1%	benign(0.312)	tolerated(0.41)	neutral(0.113)	HMMPfam_NAD_binding_1,superfamily_SSF52343
TGFBR2	7048	genome.wustl.edu	37	3	30686373	30686373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024847.2	+1	reviewed	p.C102R	1.000	153	0%	95	22.1%	6	16.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like
MLH1	4292	genome.wustl.edu	37	3	37038192	37038192	+	Missense_Mutation	SNP	G	G	T	rs121912959		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000249.3	+1	reviewed	p.G67W	1.000	348	0%	367	30%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
MLH1	4292	genome.wustl.edu	37	3	37090434	37090438	+	Frame_Shift_Del	DEL	AGTAA	AGTAA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AGTAA	AGTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000249.3	+1	reviewed	p.S677fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37357087	37357087	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.K471*	1.000	310	0%	369	33.1%	3	0%	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39229323	39229323	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.T538	0.959	49	0%	58	24.1%	0	-	-	-	-	NULL
LOC729454	729454	genome.wustl.edu	37	3	39255671	39255671	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001130287.2	+1	model	p.T89	0.016	17	0%	30	30%	0	-	-	-	-	superfamily_Actin depolymerizing proteins
CX3CR1	1524	genome.wustl.edu	37	3	39307864	39307864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001337.3	-1	reviewed	p.L46P	1.000	243	0%	237	33.8%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
MYRIP	25924	genome.wustl.edu	37	3	40231667	40231667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015460.2	+1	validated	p.A460T	0.019	102	2%	83	28.9%	2	50%	benign(0)	tolerated(0.94)	-	NULL
SEC22C	9117	genome.wustl.edu	37	3	42594854	42594854	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451653	-1	known	p.A188T	1.000	231	0.9%	294	35.7%	10	20%	-	-	-	NULL
C3orf23	285343	genome.wustl.edu	37	3	44441965	44441965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173826.3	+1	validated	p.V335A	0.000	407	0%	385	29.1%	9	44.4%	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
LTF	4057	genome.wustl.edu	37	3	46501164	46501164	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002343.2	-1	reviewed	p.Q63	0.000	246	0%	287	27.5%	8	75%	-	-	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
SCAP	22937	genome.wustl.edu	37	3	47462161	47462161	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.P482	0.001	37	0%	33	45.5%	40	35%	-	-	-	NULL
CDC25A	993	genome.wustl.edu	37	3	48200932	48200932	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001789.2	-1	reviewed	p.R446*	0.912	193	0%	254	29.1%	6	16.6%	-	-	-	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
WDR6	11180	genome.wustl.edu	37	3	49050495	49050495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018031.3	+1	reviewed	p.D540N	1.000	55	0%	66	37.9%	37	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LOC646498	646498	genome.wustl.edu	37	3	49215143	49215143	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080528.2	-1	validated	p.L181	0.582	93	0%	98	35.7%	0	-	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52398997	52398997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.R1827H	0.871	61	1.6%	47	31.9%	0	-	benign(0.03)	tolerated(0.1)	neutral(0.288)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BAP1	8314	genome.wustl.edu	37	3	52440873	52440873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004656.2	-1	reviewed	p.M211V	1.000	93	0%	45	31.1%	29	48.2%	benign(0.167)	tolerated(0.11)	neutral(0.287)	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases
STAB1	23166	genome.wustl.edu	37	3	52554678	52554678	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015136.2	+1	reviewed	p.G1890	0.997	58	0%	56	35.7%	10	10%	-	-	-	NULL
PBRM1	55193	genome.wustl.edu	37	3	52621392	52621392	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018165.4	-1	validated	p.K1002*	1.000	499	0.2%	483	34%	3	0%	-	-	-	HMMPfam_BAH,HMMSmart_BAH
ADAMTS9	56999	genome.wustl.edu	37	3	64554056	64554056	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000481060	-1	known	p.A560V	1.000	243	0.4%	244	32.8%	57	31.5%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
LRIG1	26018	genome.wustl.edu	37	3	66457908	66457908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015541.2	-1	validated	p.S315T	1.000	62	0%	41	34.1%	117	49.5%	possibly_damaging(0.747)	tolerated(0.14)	deleterious(0.524)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ROBO1	6091	genome.wustl.edu	37	3	78719377	78719377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.V473I	0.967	91	0%	94	33%	2	0%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PROS1	5627	genome.wustl.edu	37	3	93646230	93646231	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.S33fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_GLA
COL8A1	1295	genome.wustl.edu	37	3	99514217	99514217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001850.3	+1	reviewed	p.Q491R	0.960	30	0%	30	30%	4	0%	unknown(0)	tolerated(0.45)	-	HMMPfam_Collagen
PCNP	57092	genome.wustl.edu	37	3	101298828	101298828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020357.1	+1	provisional	p.S87A	1.000	275	0.4%	352	27.3%	94	42.5%	possibly_damaging(0.754)	deleterious(0)	deleterious(0.723)	NULL
ALCAM	214	genome.wustl.edu	37	3	105266046	105266046	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000465413	+1	known	p.C147R	1.000	269	0%	196	30.6%	3	66.6%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SLC9A10	285335	genome.wustl.edu	37	3	111898454	111898454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.G948E	1.000	491	0%	416	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,superfamily_cAMP-binding domain-like
C3orf17	25871	genome.wustl.edu	37	3	112736398	112736398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015412.3	-1	validated	p.L53P	0.850	423	0.2%	401	31.7%	13	46.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SPICE1	152185	genome.wustl.edu	37	3	113166933	113166934	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144718.3	-1	validated	p.S793fs	0.985:0.986	-	-	-	-	-	-	-	-	-	NULL
ZBTB20	26137	genome.wustl.edu	37	3	114070442	114070442	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015642.4	-1	validated	p.G88	1.000	28	0%	43	20.9%	0	-	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ARHGAP31	57514	genome.wustl.edu	37	3	119101138	119101138	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	e5-1	1.000	130	0.8%	128	34.4%	0	-	-	-	-	-
ARHGAP31	57514	genome.wustl.edu	37	3	119120921	119120921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.P441L	0.909	111	0%	102	34.3%	3	0%	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119120929	119120929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.E444K	0.997	111	0%	94	30.9%	1	0%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
TMEM39A	55254	genome.wustl.edu	37	3	119150896	119150896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018266.1	-1	provisional	p.R467W	1.000	172	0.6%	173	31.2%	40	45%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tmp39
POPDC2	64091	genome.wustl.edu	37	3	119379077	119379077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022135.2	-1	reviewed	p.V65A	1.000	111	0%	146	39%	2	0%	benign(0.002)	tolerated(0.59)	neutral(0.004)	NULL
C3orf15	89876	genome.wustl.edu	37	3	119456235	119456235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033364.3	+1	validated	p.K456R	0.670	210	0%	235	31.5%	2	100%	benign(0.006)	tolerated(0.5)	neutral(0.010)	NULL
ILDR1	286676	genome.wustl.edu	37	3	121712209	121712209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175924.2	-1	provisional	p.R419C	0.977	46	0%	49	34.7%	33	51.5%	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	NULL
ROPN1	54763	genome.wustl.edu	37	3	123699277	123699277	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017578.2	-1	provisional	p.L18	1.000	153	0%	122	31.1%	0	-	-	-	-	HMMPfam_RIIa,superfamily_Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit
PODXL2	50512	genome.wustl.edu	37	3	127390454	127390454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015720.2	+1	validated	p.V535M	1.000	55	0%	48	33.3%	190	43.6%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_CD34_antigen
ISY1	57461	genome.wustl.edu	37	3	128852998	128852999	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020701.2	-1	provisional	p.E194fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Isy1
PLXND1	23129	genome.wustl.edu	37	3	129304866	129304866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015103.2	-1	validated	p.S594G	0.985	57	0%	41	29.3%	6	0%	benign(0.003)	tolerated(0.71)	neutral(0.002)	HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat
ACAD11	84129	genome.wustl.edu	37	3	132294651	132294651	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032169.4	-1	validated	p.Q656*	0.924	164	0%	195	34.9%	16	43.7%	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
UBA5	79876	genome.wustl.edu	37	3	132394464	132394464	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024818.3	+1	reviewed	p.L322	0.001	332	0.3%	343	30.6%	39	25.6%	-	-	-	superfamily_MoeB
SOX14	8403	genome.wustl.edu	37	3	137483660	137483660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004189.2	+1	reviewed	p.M12V	1.000	90	0%	75	32%	7	14.2%	possibly_damaging(0.817)	deleterious(0)	deleterious(0.754)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
PRR23A	729627	genome.wustl.edu	37	3	138724531	138724531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134659.1	-1	validated	p.P194S	0.001	94	0%	152	35.5%	0	-	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	HMMPfam_DUF2476
ZIC4	84107	genome.wustl.edu	37	3	147113849	147113849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383075	-1	known	p.V160M	1.000	103	0%	91	29.7%	9	44.4%	benign(0.194)	tolerated(0.13)	neutral(0.271)	HMMSmart_SM00355
CPA3	1359	genome.wustl.edu	37	3	148586744	148586744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001870.2	+1	reviewed	p.N63D	0.390	317	0%	295	29.2%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
HPS3	84343	genome.wustl.edu	37	3	148857972	148857972	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032383.3	+1	reviewed	p.S133	0.000	329	0.3%	358	30.7%	10	30%	-	-	-	NULL
PLCH1	23007	genome.wustl.edu	37	3	155303984	155303984	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130960.1	-1	validated	e4-1	0.040	326	0%	285	27.4%	0	-	-	-	-	-
MFSD1	64747	genome.wustl.edu	37	3	158524834	158524834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022736.2	+1	validated	p.G112D	1.000	497	0%	477	28.1%	28	39.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PDCD10	11235	genome.wustl.edu	37	3	167422642	167422642	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479121	-1	known	p.R27C	1.000	285	0%	251	27.1%	37	56.7%	-	-	-	HMMPfam_DUF1241
SLC2A2	6514	genome.wustl.edu	37	3	170732400	170732400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.K77Q	0.000	593	0%	568	35.4%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
PIK3CA	5290	genome.wustl.edu	37	3	178921567	178921567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.D350G	1.000	142	0%	125	32%	2	0%	possibly_damaging(0.46)	tolerated(0.07)	deleterious(0.470)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
CPN2	1370	genome.wustl.edu	37	3	194063023	194063023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080513.2	-1	validated	p.P137S	0.775	75	0%	77	28.6%	0	-	benign(0.03)	tolerated(0.26)	neutral(0.036)	HMMSmart_SM00369,superfamily_RNI-like
SENP5	205564	genome.wustl.edu	37	3	196613008	196613008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152699.4	+1	validated	p.T319M	0.941	92	0%	122	29.5%	7	42.8%	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
KIAA0226	9711	genome.wustl.edu	37	3	197411044	197411044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145642.2	-1	validated	p.V566I	0.576	270	0.4%	352	29.8%	17	41.1%	benign(0)	tolerated(0.93)	-	NULL
LMLN	89782	genome.wustl.edu	37	3	197702962	197702962	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136049.2	+1	reviewed	p.A137	0.862	136	0%	161	29.2%	2	50%	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
CRIPAK	285464	genome.wustl.edu	37	4	1389498	1389498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175918.3	+1	validated	p.A400V	0.004	317	0%	200	12.5%	4	25%	unknown(0)	-	-	NULL
ZFYVE28	57732	genome.wustl.edu	37	4	2307146	2307146	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020972.2	-1	validated	p.A307	0.002	30	0%	23	60.9%	3	33.3%	-	-	-	NULL
MFSD10	10227	genome.wustl.edu	37	4	2932777	2932777	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514800	-1	known	p.A421	0.000	19	0%	16	31.2%	18	61.1%	-	-	-	NULL
HTT	3064	genome.wustl.edu	37	4	3101102	3101102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002111.6	+1	reviewed	p.C150Y	1.000	299	0%	306	34.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
RGS12	6002	genome.wustl.edu	37	4	3441311	3441311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198229.2	+1	reviewed	p.A1415V	0.000	30	0%	19	31.6%	14	35.7%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
CPZ	8532	genome.wustl.edu	37	4	8620172	8620172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014447.1	+1	reviewed	p.K507R	1.000	124	0%	107	34.6%	32	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain,superfamily_Zn-dependent exopeptidases
RAB28	9364	genome.wustl.edu	37	4	13370220	13370220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017979.2	-1	reviewed	p.V210I	0.992	441	0%	335	11.3%	25	12%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMSmart_SM00176
CC2D2A	57545	genome.wustl.edu	37	4	15556736	15556736	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080522.2	+1	reviewed	p.S843*	0.996	261	0%	265	25.7%	3	0%	-	-	-	NULL
GBA3	57733	genome.wustl.edu	37	4	22820448	22820448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020973.3	+1	validated	p.V438I	0.989	370	0%	350	29.4%	11	54.5%	possibly_damaging(0.484)	tolerated(0.16)	neutral(0.220)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
SEPSECS	51091	genome.wustl.edu	37	4	25128911	25128911	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016955.3	-1	validated	p.H286	0.994	629	0%	542	12%	4	50%	-	-	-	HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases
PCDH7	5099	genome.wustl.edu	37	4	30726238	30726238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032456.1	+1	reviewed	p.I1065T	0.000	180	0%	211	33.6%	4	75%	-	-	-	NULL
RFC1	5981	genome.wustl.edu	37	4	39329345	39329345	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.A121	0.971	529	0%	562	29%	4	100%	-	-	-	NULL
UGDH	7358	genome.wustl.edu	37	4	39505541	39505541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003359.3	-1	reviewed	p.R443H	0.997	249	0%	249	29.3%	69	42%	probably_damaging(0.96)	tolerated(0.1)	deleterious(0.690)	HMMPfam_UDPG_MGDP_dh_C,superfamily_UDP-Glc/GDP-Man_DH_C
PHOX2B	8929	genome.wustl.edu	37	4	41750600	41750600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003924.3	-1	reviewed	p.N10D	1.000	78	0%	83	25.3%	0	-	benign(0.202)	deleterious(0.01)	neutral(0.425)	NULL
ATP8A1	10396	genome.wustl.edu	37	4	42487677	42487677	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006095.2	-1	reviewed	p.R720	1.000	205	0.5%	225	27.1%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like
LRRC66	339977	genome.wustl.edu	37	4	52883306	52883306	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.N158K	0.572	374	0%	395	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
KDR	3791	genome.wustl.edu	37	4	55946114	55946114	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.P1355	1.000	383	0.3%	335	31.3%	7	0%	-	-	-	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57182397	57182397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020722.1	+1	validated	p.R910Q	0.001	32	0%	46	43.5%	3	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
LPHN3	23284	genome.wustl.edu	37	4	62801729	62801729	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502815	+1	known	p.V185I	0.224	136	0%	162	30.2%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TMPRSS11D	9407	genome.wustl.edu	37	4	68699019	68699019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004262.2	-1	reviewed	p.P199S	1.000	143	0%	151	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SHROOM3	57619	genome.wustl.edu	37	4	77675764	77675764	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.Q1376	0.806	41	0%	30	23.3%	13	53.8%	-	-	-	NULL
LIN54	132660	genome.wustl.edu	37	4	83857172	83857172	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194282.2	-1	validated	p.R603*	1.000	568	0%	551	30.9%	5	40%	-	-	-	HMMPfam_CXC
AGPAT9	84803	genome.wustl.edu	37	4	84519301	84519301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032717.3	+1	validated	p.D365G	0.999	213	0%	203	29.1%	4	50%	possibly_damaging(0.93)	deleterious(0.01)	deleterious(0.782)	NULL
MEPE	56955	genome.wustl.edu	37	4	88767533	88767533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020203.3	+1	validated	p.R505C	0.000	97	0%	106	30.2%	0	-	unknown(0)	tolerated(0.1)	-	NULL
ATOH1	474	genome.wustl.edu	37	4	94750909	94750909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005172.1	+1	reviewed	p.A278T	0.000	11	0%	14	35.7%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
USP53	54532	genome.wustl.edu	37	4	120213660	120213660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019050.2	+1	validated	p.T839K	0.011	200	0%	237	34.6%	12	8.3%	benign(0.318)	tolerated(0.05)	neutral(0.445)	NULL
PRDM5	11107	genome.wustl.edu	37	4	121737994	121737994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018699.2	-1	reviewed	p.A246T	0.998	188	0%	210	26.7%	0	-	benign(0.15)	tolerated(0.24)	neutral(0.050)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
QRFPR	84109	genome.wustl.edu	37	4	122257983	122257983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198179.2	-1	validated	p.M180I	1.000	143	0%	162	18.5%	0	-	possibly_damaging(0.925)	tolerated(0.05)	deleterious(0.719)	HMMPfam_7tm_1,superfamily_SSF81321
SPATA5	166378	genome.wustl.edu	37	4	123859394	123859394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145207.2	+1	validated	p.G483D	1.000	385	0%	417	26.9%	2	50%	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125591680	125591680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.R918W	0.995	176	0%	180	31.7%	6	66.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126237935	126237935	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.V123	1.000	56	0%	40	15%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134072331	134072331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.V346M	1.000	61	0%	54	22.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
SLC10A7	84068	genome.wustl.edu	37	4	147204409	147204409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029998.3	-1	validated	p.S261L	1.000	327	0.3%	272	27.6%	5	40%	benign(0)	tolerated(1)	-	NULL
PLRG1	5356	genome.wustl.edu	37	4	155457811	155457811	+	Silent	SNP	A	A	G	rs140279149	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503251	-1	known	p.L102	0.000	118	0%	74	36.5%	20	50%	-	-	-	NULL
NPY1R	4886	genome.wustl.edu	37	4	164246874	164246874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000909.4	-1	validated	p.D246N	1.000	365	0%	312	30.1%	1	0%	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM75	391714	genome.wustl.edu	37	4	165981570	165981570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322402	+1	known	p.I424T	0.834	308	0.3%	355	31%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
TMEM192	201931	genome.wustl.edu	37	4	166000895	166000895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100389.1	-1	validated	p.Y244C	0.950	293	0%	363	30.9%	19	26.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
DDX60	55601	genome.wustl.edu	37	4	169158925	169158925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017631.5	-1	validated	p.S1396P	1.000	217	0%	246	28.9%	9	0%	possibly_damaging(0.872)	tolerated(0.97)	neutral(0.339)	NULL
MTNR1A	4543	genome.wustl.edu	37	4	187455365	187455365	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005958.3	-1	reviewed	p.C177	0.251	115	0%	143	27.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MTNR1A	4543	genome.wustl.edu	37	4	187476384	187476384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005958.3	-1	reviewed	p.L46I	1.000	24	0%	20	40%	0	-	benign(0.008)	tolerated(0.92)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAT1	2195	genome.wustl.edu	37	4	187525716	187525716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.V3455M	0.871	176	0%	153	29.4%	8	12.5%	benign(0.372)	deleterious(0.03)	deleterious(0.483)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
TRIP13	9319	genome.wustl.edu	37	5	914627	914627	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004237.3	+1	reviewed	p.L356	0.657	196	0%	200	28%	15	26.6%	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC6A19	340024	genome.wustl.edu	37	5	1214103	1214103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452116	+1	known	p.R240C	0.993	125	0%	104	30.8%	0	-	unknown(0)	deleterious(0)	-	NULL
IRX4	50805	genome.wustl.edu	37	5	1879636	1879636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016358.2	-1	validated	p.K240E	0.994	39	0%	35	25.7%	0	-	probably_damaging(0.981)	tolerated(0.1)	deleterious(0.712)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5186275	5186275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.V292M	1.000	178	0%	200	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS16	170690	genome.wustl.edu	37	5	5239954	5239954	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.G813	0.571	169	0%	163	28.2%	1	0%	-	-	-	HMMPfam_ADAM_spacer1
DNAH5	1767	genome.wustl.edu	37	5	13770947	13770947	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.H3172	0.789	348	0%	346	29.5%	1	0%	-	-	-	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13781062	13781062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R2943C	0.986	118	0%	126	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
ANKH	56172	genome.wustl.edu	37	5	14871449	14871449	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505140	-1	known	p.G36	0.045	43	0%	33	48.5%	0	-	-	-	-	NULL
FAM134B	54463	genome.wustl.edu	37	5	16477780	16477783	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TGTC	TGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034850.1	-1	reviewed	p.D330fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SKP2	6502	genome.wustl.edu	37	5	36168425	36168425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005983.2	+1	reviewed	p.V183I	0.614	432	0%	364	32.4%	23	43.4%	benign(0.005)	tolerated(0.13)	neutral(0.253)	superfamily_RNI-like
C5orf42	65250	genome.wustl.edu	37	5	37154018	37154018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.R1577W	0.000	196	0%	204	28.9%	1	100%	possibly_damaging(0.748)	deleterious(0.04)	deleterious(0.623)	NULL
OSMR	9180	genome.wustl.edu	37	5	38885529	38885529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003999.2	+1	reviewed	p.T261M	0.000	308	0%	264	32.6%	7	0%	possibly_damaging(0.566)	tolerated(0.11)	neutral(0.465)	superfamily_Fibronectin type III
DAB2	1601	genome.wustl.edu	37	5	39377026	39377026	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.Q621	0.993	236	0%	265	29.1%	16	0%	-	-	-	NULL
C7	730	genome.wustl.edu	37	5	40947793	40947793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.F276L	1.000	332	0%	312	34.3%	0	-	possibly_damaging(0.822)	tolerated(0.07)	deleterious(0.630)	HMMPfam_MACPF,HMMSmart_MACPF
SEPP1	6414	genome.wustl.edu	37	5	42800932	42800932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093726.1	-1	reviewed	p.R376C	1.000	192	0%	170	28.8%	151	41.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SelP_C
ADAMTS6	11174	genome.wustl.edu	37	5	64755998	64755998	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197941.2	-1	reviewed	p.S210	0.998	410	0%	429	32.9%	1	100%	-	-	-	NULL
TRIM23	373	genome.wustl.edu	37	5	64887706	64887706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001656.3	-1	reviewed	p.R539S	1.000	341	0%	246	29.3%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERBB2IP	55914	genome.wustl.edu	37	5	65338922	65338922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018695.2	+1	reviewed	p.N442D	1.000	289	0%	300	36%	12	33.3%	possibly_damaging(0.577)	tolerated(0.13)	neutral(0.451)	superfamily_SSF52058
SREK1	140890	genome.wustl.edu	37	5	65466625	65466625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077199.1	+1	validated	p.R445Q	1.000	431	0.2%	680	30.3%	20	40%	unknown(0)	deleterious(0.03)	-	superfamily_SSF54928
PIK3R1	5295	genome.wustl.edu	37	5	67591097	67591097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.N564D	1.000	452	0%	428	29.9%	285	49.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
BDP1	55814	genome.wustl.edu	37	5	70782440	70782440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.R400Q	0.968	201	0%	231	27.7%	4	50%	possibly_damaging(0.914)	deleterious(0.02)	deleterious(0.749)	NULL
MCCC2	64087	genome.wustl.edu	37	5	70900281	70900281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022132.4	+1	reviewed	p.K204E	0.997	419	0%	442	16.5%	41	29.2%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
ZNF366	167465	genome.wustl.edu	37	5	71756235	71756235	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152625.1	-1	provisional	p.R363	0.716	125	0%	119	29.4%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ANKRD31	256006	genome.wustl.edu	37	5	74441954	74441954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.K1094N	0.274	413	0%	401	25.9%	0	-	benign(0.316)	deleterious(0)	deleterious(0.543)	superfamily_ANK
CETN3	1070	genome.wustl.edu	37	5	89695217	89695217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004365.2	-1	reviewed	p.R140*	1.000	620	0.3%	547	30.2%	30	33.3%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
GPR98	84059	genome.wustl.edu	37	5	90070029	90070029	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.L4104	0.838	275	0%	284	39.1%	1	0%	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
NR2F1	7025	genome.wustl.edu	37	5	92923860	92923860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005654.4	+1	provisional	p.A234V	1.000	95	0%	49	26.5%	3	33.3%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
KIAA0825	285600	genome.wustl.edu	37	5	93739379	93739380	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145678.1	-1	validated	p.C927fs	0.004:0.000	-	-	-	-	-	-	-	-	-	NULL
TTC37	9652	genome.wustl.edu	37	5	94857817	94857817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.A651V	1.000	627	0%	550	20.5%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans
P4HA2	8974	genome.wustl.edu	37	5	131546185	131546185	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142599.1	-1	reviewed	p.D167	0.648	180	0%	189	29.1%	92	38%	-	-	-	NULL
SEPT8	23176	genome.wustl.edu	37	5	132097284	132097284	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098811.1	-1	validated	p.L276	0.084	134	0%	115	26.1%	18	27.7%	-	-	-	HMMPfam_Septin
FSTL4	23105	genome.wustl.edu	37	5	132556523	132556523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015082.1	-1	validated	p.D459N	0.976	189	0%	186	24.7%	1	0%	benign(0.054)	tolerated(0.14)	neutral(0.253)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
TRPC7	57113	genome.wustl.edu	37	5	135610370	135610370	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378459	-1	known	p.V312M	1.000	136	0.7%	184	30.4%	0	-	-	-	-	NULL
EGR1	1958	genome.wustl.edu	37	5	137801538	137801538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001964.2	+1	reviewed	p.D30N	1.000	68	0%	42	31%	37	24.3%	benign(0.138)	deleterious(0)	neutral(0.456)	NULL
PCDHA3	56145	genome.wustl.edu	37	5	140181480	140181480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.L233S	0.163	68	0%	82	29.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140214439	140214439	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.A157	0.000	122	0%	160	11.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140228551	140228551	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.A157	0.000	114	0%	92	40.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140431547	140431547	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013340.2	+1	reviewed	p.L164	0.054	38	0%	38	28.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559706	140559706	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.S697	0.001	75	0%	46	26.1%	0	-	-	-	-	NULL
PCDHB16	57717	genome.wustl.edu	37	5	140562523	140562523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.S130Y	0.984	89	0%	100	28%	0	-	possibly_damaging(0.902)	deleterious(0.03)	deleterious(0.722)	PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHGA6	56109	genome.wustl.edu	37	5	140753715	140753715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018919.2	+1	reviewed	p.T22M	0.000	43	0%	31	32.3%	0	-	benign(0.005)	tolerated(0.33)	neutral(0.024)	superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140763116	140763116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018920.2	+1	reviewed	p.G217D	1.000	33	0%	30	43.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CAMK2A	815	genome.wustl.edu	37	5	149669140	149669140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015981.3	-1	reviewed	p.E17K	1.000	172	0%	174	31.6%	0	-	probably_damaging(0.962)	tolerated(0.25)	neutral(0.442)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAT2	2196	genome.wustl.edu	37	5	150946360	150946360	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.T711	0.163	157	0%	131	32.8%	0	-	-	-	-	superfamily_Cadherin-like
GALNT10	55568	genome.wustl.edu	37	5	153709263	153709263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198321.3	+1	reviewed	p.A178V	1.000	177	0%	162	29.6%	39	38.4%	possibly_damaging(0.437)	tolerated(0.1)	neutral(0.429)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
LARP1	23367	genome.wustl.edu	37	5	154181809	154181809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	p.M576I	1.000	120	0%	144	27.8%	35	17.1%	benign(0.004)	tolerated(0.36)	neutral(0.020)	PatternScan_CYTOCHROME_B5_1
GEMIN5	25929	genome.wustl.edu	37	5	154278046	154278046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.N1100I	1.000	134	0%	117	25.6%	7	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ITK	3702	genome.wustl.edu	37	5	156608074	156608074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005546.3	+1	reviewed	p.R29H	1.000	234	0%	270	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CLINT1	9685	genome.wustl.edu	37	5	157214917	157214917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014666.2	-1	validated	p.P539S	1.000	184	0%	205	33.2%	70	42.8%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
ODZ2	57451	genome.wustl.edu	37	5	167674260	167674260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.V2097I	0.981	235	0.4%	239	30.5%	1	100%	benign(0.008)	tolerated(0.43)	neutral(0.013)	superfamily_Concanavalin A-like lectins/glucanases
SLIT3	6586	genome.wustl.edu	37	5	168201376	168201376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.N387D	1.000	262	0.4%	248	28.6%	3	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_SM00369,superfamily_RNI-like
CCDC99	54908	genome.wustl.edu	37	5	169023625	169023625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017785.4	+1	validated	p.R318W	1.000	251	0.4%	208	24.5%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C5orf47	133491	genome.wustl.edu	37	5	173416339	173416339	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144954.1	+1	validated	p.Q25*	0.781	34	0%	30	26.7%	0	-	-	-	-	NULL
C5orf25	375484	genome.wustl.edu	37	5	175717498	175717498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420396	+1	known	p.P305L	0.000	183	0%	189	27.5%	6	50%	benign(0.042)	tolerated(0.19)	neutral(0.052)	NULL
HK3	3101	genome.wustl.edu	37	5	176323160	176323160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002115.2	-1	reviewed	p.M1V	0.996	88	0%	78	24.4%	1	0%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
LMAN2	10960	genome.wustl.edu	37	5	176759170	176759170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006816.2	-1	reviewed	p.A330T	0.983	22	0%	32	21.9%	464	45.4%	benign(0.074)	tolerated(0.23)	neutral(0.046)	NULL
GRK6	2870	genome.wustl.edu	37	5	176860543	176860543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002082.3	+1	reviewed	p.A202T	1.000	90	0%	137	32.8%	37	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
DDX41	51428	genome.wustl.edu	37	5	176943382	176943382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016222.2	-1	reviewed	p.E69K	1.000	131	0.8%	146	30.8%	72	33.3%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
RMND5B	64777	genome.wustl.edu	37	5	177565123	177565123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022762.3	+1	provisional	p.M1I	1.000	55	0%	68	22.1%	22	45.4%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
COL23A1	91522	genome.wustl.edu	37	5	177669356	177669356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173465.3	-1	validated	p.E494K	0.984	294	0.3%	324	34.9%	12	33.3%	benign(0.034)	tolerated(0.13)	neutral(0.255)	HMMPfam_Collagen
MGAT4B	11282	genome.wustl.edu	37	5	179228876	179228876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054013.3	-1	reviewed	p.L79P	1.000	55	0%	46	23.9%	78	47.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZFP62	643836	genome.wustl.edu	37	5	180277030	180277030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152283.4	-1	validated	p.R429C	1.000	323	0%	311	32.8%	9	44.4%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BTNL8	79908	genome.wustl.edu	37	5	180329343	180329344	+	Splice_Site	INS	-	-	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400707	+1	known	e1-2	0.000:0.000	-	-	-	-	-	-	-	-	-	-
NQO2	4835	genome.wustl.edu	37	6	3012908	3012908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000904.3	+1	validated	p.Q101H	1.000	413	0%	433	26.6%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins
TUBB2A	7280	genome.wustl.edu	37	6	3154249	3154249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001069.2	-1	validated	p.H396Y	1.000	84	0%	118	17.8%	308	1.9%	benign(0.109)	deleterious(0)	neutral(0.453)	superfamily_Tubulin C-terminal domain-like
PRPF4B	8899	genome.wustl.edu	37	6	4041056	4041056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.R488H	0.998	168	0%	211	33.2%	16	50%	unknown(0)	deleterious(0.03)	-	NULL
DSP	1832	genome.wustl.edu	37	6	7581583	7581585	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.E1723in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Prefoldin
RANBP9	10048	genome.wustl.edu	37	6	13622674	13622674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005493.2	-1	reviewed	p.A704T	1.000	224	0%	190	32.1%	37	51.3%	possibly_damaging(0.705)	deleterious(0.02)	deleterious(0.637)	HMMSmart_SM00757,HMMPfam_RanBPM_CRA
HIST1H2AB	8335	genome.wustl.edu	37	6	26033624	26033624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003513.2	-1	reviewed	p.Y58C	1.000	77	0%	65	30.8%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
BTN1A1	696	genome.wustl.edu	37	6	26509061	26509061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001732.2	+1	validated	p.P414T	0.346	132	0%	147	27.2%	0	-	benign(0.024)	tolerated(0.21)	neutral(0.045)	HMMPfam_SPRY,HMMSmart_SM00449
HIST1H1B	3009	genome.wustl.edu	37	6	27835090	27835090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005322.2	-1	reviewed	p.G73D	1.000	140	0%	82	28%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785
OR2B3	442184	genome.wustl.edu	37	6	29054679	29054679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005226.2	-1	validated	p.A116V	0.044	248	0%	233	33.9%	0	-	possibly_damaging(0.86)	tolerated(0.29)	neutral(0.362)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
PPP1R10	5514	genome.wustl.edu	37	6	30569420	30569420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002714.2	-1	reviewed	p.P910H	1.000	89	1.1%	72	25%	87	43.6%	unknown(0)	deleterious(0)	-	HMMPfam_zf-CCCH,HMMSmart_SM00356
NOTCH4	4855	genome.wustl.edu	37	6	32182016	32182017	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004557.3	-1	reviewed	p.C679fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
KIFC1	3833	genome.wustl.edu	37	6	33374387	33374387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002263.3	+1	validated	p.R616W	1.000	340	0%	453	29.4%	36	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
GRM4	2914	genome.wustl.edu	37	6	34003589	34003589	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000841.1	-1	reviewed	p.T766	0.938	58	0%	71	32.4%	0	-	-	-	-	HMMPfam_7tm_3
STK38	11329	genome.wustl.edu	37	6	36489539	36489539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007271.2	-1	provisional	p.R121H	1.000	282	0%	312	26.9%	11	54.5%	possibly_damaging(0.896)	tolerated(0.05)	deleterious(0.699)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FGD2	221472	genome.wustl.edu	37	6	36993702	36993702	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173558.3	+1	validated	p.R531	0.013	51	2%	50	28%	6	0%	-	-	-	NULL
FTSJD2	23070	genome.wustl.edu	37	6	37439655	37439655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015050.2	+1	validated	p.R532Q	1.000	83	1.2%	107	25.2%	12	66.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38746191	38746191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.S447G	0.392	263	0%	203	17.2%	0	-	benign(0.026)	tolerated(0.45)	neutral(0.013)	HMMPfam_DHC_N1
GLP1R	2740	genome.wustl.edu	37	6	39033490	39033490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002062.3	+1	validated	p.P96L	0.624	79	0%	101	35.6%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793)
TSPO2	222642	genome.wustl.edu	37	6	41011860	41011860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010873.2	+1	validated	p.T166M	0.000	99	0%	100	30%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
MDFI	4188	genome.wustl.edu	37	6	41617479	41617479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005586.3	+1	reviewed	p.R128W	1.000	113	0%	132	31.1%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CUL7	9820	genome.wustl.edu	37	6	43018803	43018803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.P379L	0.845	147	0%	174	33.3%	10	40%	benign(0.079)	deleterious(0.05)	neutral(0.351)	NULL
PTK7	5754	genome.wustl.edu	37	6	43099813	43099813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002821.3	+1	reviewed	p.V291A	1.000	97	0%	140	37.9%	102	33.3%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SLC22A7	10864	genome.wustl.edu	37	6	43267398	43267398	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153320.2	+1	reviewed	p.Y179	0.754	152	0.7%	138	36.2%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ENPP4	22875	genome.wustl.edu	37	6	46107741	46107741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014936.4	+1	validated	p.V141I	0.992	232	0%	255	37.6%	18	61.1%	possibly_damaging(0.76)	deleterious(0.02)	deleterious(0.664)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
PGK2	5232	genome.wustl.edu	37	6	49754434	49754434	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138733.4	-1	reviewed	p.K156T	0.997	369	0%	346	35%	0	-	benign(0.021)	tolerated(0.06)	neutral(0.324)	HMMPfam_PGK,superfamily_PGK
TFAP2B	7021	genome.wustl.edu	37	6	50810967	50810967	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003221.3	+1	reviewed	p.T415	0.722	70	0%	56	25%	0	-	-	-	-	HMMPfam_TF_AP-2
GSTA5	221357	genome.wustl.edu	37	6	52705592	52705592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153699.1	-1	provisional	p.L7H	0.998	529	0%	479	36.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_GST_N,superfamily_Thiordxn-like_fd
COL21A1	81578	genome.wustl.edu	37	6	56006731	56006731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030820.3	-1	reviewed	p.I495M	0.992	176	0.6%	233	36.1%	56	42.8%	possibly_damaging(0.843)	tolerated(0.1)	deleterious(0.609)	HMMPfam_Collagen
FAM135A	57579	genome.wustl.edu	37	6	71266481	71266481	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.L1223	0.993	247	0%	223	21.5%	5	20%	-	-	-	HMMPfam_DUF676,superfamily_SSF53474
SLC17A5	26503	genome.wustl.edu	37	6	74331659	74331659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012434.4	-1	reviewed	p.W282C	0.998	117	0%	129	30.2%	12	66.6%	possibly_damaging(0.505)	deleterious(0.04)	deleterious(0.518)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
COL12A1	1303	genome.wustl.edu	37	6	75866094	75866094	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.V1043	0.973	650	0.5%	455	25.9%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FILIP1	27145	genome.wustl.edu	37	6	76022391	76022391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.Y1053H	0.998	315	0%	288	28.1%	10	30%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
REV3L	5980	genome.wustl.edu	37	6	111710413	111710413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.A253V	1.000	466	0%	479	34.2%	2	100%	probably_damaging(0.998)	-	-	superfamily_Ribonuclease H-like
ZUFSP	221302	genome.wustl.edu	37	6	116973199	116973199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145062.2	-1	validated	p.L373S	0.998	254	0.8%	320	29.1%	8	50%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Peptidase_C78
HEY2	23493	genome.wustl.edu	37	6	126080739	126080739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012259.2	+1	reviewed	p.A269T	0.995	60	0%	38	39.5%	78	30.7%	possibly_damaging(0.915)	tolerated(0.33)	neutral(0.391)	NULL
ARG1	383	genome.wustl.edu	37	6	131902388	131902388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000045.2	+1	reviewed	p.A112V	1.000	198	0.5%	194	39.2%	0	-	benign(0.263)	tolerated(0.09)	neutral(0.324)	HMMPfam_Arginase,superfamily_Arginase/deacetylase
ADGB	79747	genome.wustl.edu	37	6	147109545	147109545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024694.3	+1	provisional	p.V1446I	0.000	323	0%	428	31.8%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
SCAF8	22828	genome.wustl.edu	37	6	155131195	155131195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.R425C	1.000	228	0%	276	30.8%	13	38.4%	unknown(0)	deleterious(0)	-	NULL
ARID1B	57492	genome.wustl.edu	37	6	157505432	157505432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017519.2	+1	validated	p.A1120V	1.000	182	0%	160	32.5%	16	37.5%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
FGFR1OP	11116	genome.wustl.edu	37	6	167417851	167417851	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494781	+1	known	NULL	1.000	302	0%	302	27.2%	18	55.5%	-	-	-	-
THBS2	7058	genome.wustl.edu	37	6	169641895	169641895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.V285I	0.544	44	0%	32	25%	2	0%	benign(0.002)	tolerated(0.44)	neutral(0.013)	NULL
DLL1	28514	genome.wustl.edu	37	6	170592488	170592488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005618.3	-1	reviewed	p.A627T	0.000	345	0%	320	27.8%	2	0%	benign(0.002)	tolerated(0.87)	neutral(0.001)	NULL
GPER	2852	genome.wustl.edu	37	7	1132793	1132793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354575	+1	known	p.R383C	0.000	1	0.000	4	1.000	2	0%	unknown(0)	deleterious(0)	-	NULL
CARD11	84433	genome.wustl.edu	37	7	2958189	2958189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.R848H	1.000	38	0%	23	52.2%	3	0%	benign(0.376)	deleterious(0.05)	neutral(0.465)	NULL
FOXK1	221937	genome.wustl.edu	37	7	4794940	4794940	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037165.1	+1	validated	p.L326	1.000	55	0%	41	39%	2	0%	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
RPA3	6119	genome.wustl.edu	37	7	7676636	7676636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002947.3	-1	validated	p.D121Y	0.870	320	0%	317	29.7%	71	33.8%	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	NULL
PHF14	9678	genome.wustl.edu	37	7	11082323	11082325	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000303905	+1	known	p.K733in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
PHF14	9678	genome.wustl.edu	37	7	11151056	11151056	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000303905	+1	known	p.G912*	1.000	282	0%	305	34.4%	39	51.2%	-	-	-	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
KLHL7	55975	genome.wustl.edu	37	7	23213806	23213806	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031710.2	+1	reviewed	p.T550	0.988	620	0.2%	686	31.9%	20	25%	-	-	-	superfamily_Gal_oxid_central
NOD1	10392	genome.wustl.edu	37	7	30491310	30491310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006092.2	-1	reviewed	p.R575W	0.000	64	1.6%	61	32.8%	3	33.3%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	NULL
LOC100287857	100287857	genome.wustl.edu	37	7	30951513	30951513	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342698.1	-1	model	p.G96A	0.996	42	0%	24	29.2%	3	0%	-	-	-	NULL
MYL7	58498	genome.wustl.edu	37	7	44179033	44179033	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446581	-1	known	p.A98	0.000	92	1.1%	96	32.3%	0	-	-	-	-	superfamily_EF-hand
CAMK2B	816	genome.wustl.edu	37	7	44281858	44281858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001220.4	-1	reviewed	p.R260C	1.000	454	0.2%	411	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NPC1L1	29881	genome.wustl.edu	37	7	44579394	44579394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013389.2	-1	reviewed	p.R201H	1.000	65	0%	70	30%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
TNS3	64759	genome.wustl.edu	37	7	47408879	47408879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022748.10	-1	validated	p.R455H	0.996	139	0%	110	35.5%	19	42.1%	benign(0.095)	deleterious(0)	neutral(0.452)	NULL
NCF1	653361	genome.wustl.edu	37	7	74197397	74197397	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423544	+1	known	p.R109*	0.925	103	0%	104	26.9%	25	0%	-	-	-	NULL
POM121C	100101267	genome.wustl.edu	37	7	75051282	75051282	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099415.1	-1	validated	p.T751	0.350	78	0%	55	23.6%	23	21.7%	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77583130	77583130	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127357.1	+1	validated	p.P718	0.014	769	0%	754	30.4%	7	57.1%	-	-	-	NULL
MAGI2	9863	genome.wustl.edu	37	7	77789376	77789376	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012301.3	-1	reviewed	p.S937	1.000	212	0%	190	25.3%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SEMA3A	10371	genome.wustl.edu	37	7	83631353	83631353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006080.2	-1	reviewed	p.T457I	1.000	449	0.2%	407	24.6%	1	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3D	223117	genome.wustl.edu	37	7	84628823	84628823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152754.2	-1	validated	p.M756T	1.000	517	0%	446	36.5%	1	100%	benign(0.019)	tolerated(0.5)	neutral(0.011)	NULL
ABCB4	5244	genome.wustl.edu	37	7	87069127	87069127	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.R529	0.999	298	0%	287	33.8%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB1	5243	genome.wustl.edu	37	7	87148649	87148649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.V974F	1.000	276	0%	237	20.3%	2	0%	possibly_damaging(0.471)	deleterious(0)	deleterious(0.600)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SAMD9	54809	genome.wustl.edu	37	7	92731018	92731018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.K1465E	0.225	367	0%	325	29.2%	4	0%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98563517	98563517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.Q2367R	1.000	148	0.7%	201	31.8%	8	25%	possibly_damaging(0.919)	deleterious(0.03)	deleterious(0.734)	superfamily_ARM repeat
EPHB4	2050	genome.wustl.edu	37	7	100402872	100402872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004444.4	-1	reviewed	p.R917Q	1.000	65	0%	59	25.4%	10	70%	probably_damaging(0.994)	tolerated(0.35)	deleterious(0.473)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
MUC17	140453	genome.wustl.edu	37	7	100685493	100685495	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.S3600in_frame_del	0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SH2B2	10603	genome.wustl.edu	37	7	101960877	101960877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020979.3	+1	reviewed	p.R410H	0.099	54	0%	39	33.3%	7	42.8%	benign(0.411)	deleterious(0.02)	deleterious(0.516)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ALKBH4	54784	genome.wustl.edu	37	7	102100135	102100135	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017621.2	-1	provisional	p.F79	0.960	76	0%	60	26.7%	22	22.7%	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103124180	103124180	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.N3367	0.994	248	0%	201	23.4%	0	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103175860	103175860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.N2418D	0.997	218	0%	247	35.6%	0	-	possibly_damaging(0.605)	tolerated(0.27)	neutral(0.243)	NULL
LAMB1	3912	genome.wustl.edu	37	7	107596054	107596054	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.G904	0.021	69	0%	46	39.1%	23	4.3%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
NRCAM	4897	genome.wustl.edu	37	7	107872778	107872778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037132.1	-1	reviewed	p.R140H	1.000	238	0.8%	211	23.2%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMSmart_SM00409,HMMPfam_I-set
DOCK4	9732	genome.wustl.edu	37	7	111503489	111503489	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445943	-1	known	p.C792Y	1.000	211	0%	161	29.8%	0	-	-	-	-	NULL
C7orf53	286006	genome.wustl.edu	37	7	112124970	112124970	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134468.1	+1	validated	p.L33	0.966	216	0%	173	29.5%	2	50%	-	-	-	NULL
ST7	7982	genome.wustl.edu	37	7	116776255	116776257	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021908.2	+1	reviewed	p.Q278in_frame_del	0.986:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ST7
KCND2	3751	genome.wustl.edu	37	7	119915040	119915040	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.E118	0.974	49	0%	61	37.7%	2	0%	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
AASS	10157	genome.wustl.edu	37	7	121755197	121755197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005763.3	-1	reviewed	p.A325V	0.999	568	0%	491	32.4%	2	50%	benign(0.004)	tolerated(0.35)	neutral(0.021)	HMMPfam_AlaDh_PNT_C
SLC13A1	6561	genome.wustl.edu	37	7	122809361	122809361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022444.3	-1	validated	p.A132S	1.000	184	0%	202	30.2%	0	-	benign(0.248)	tolerated(0.16)	neutral(0.084)	HMMPfam_Na_sulph_symp
WASL	8976	genome.wustl.edu	37	7	123388676	123388676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003941.2	-1	reviewed	p.C38Y	1.000	77	0%	44	29.5%	16	56.2%	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
POT1	25913	genome.wustl.edu	37	7	124463994	124463994	+	RNA	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003102.1	-1	reviewed	NULL	0.000	534	0%	535	29.2%	19	47.3%	-	-	-	-
GCC1	79571	genome.wustl.edu	37	7	127222758	127222758	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.Q546	0.997	40	0%	41	22%	6	66.6%	-	-	-	NULL
ENSG00000245606	0	genome.wustl.edu	37	7	130007729	130007729	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501661	-1	known	NULL	0.000	136	0%	113	28.3%	0	-	-	-	-	-
PLXNA4	91584	genome.wustl.edu	37	7	132193204	132193204	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.T83	0.967	89	0%	89	39.3%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ATP6V0A4	50617	genome.wustl.edu	37	7	138440458	138440458	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020632.2	-1	reviewed	p.N264	0.539	390	0%	393	27.7%	8	37.5%	-	-	-	HMMPfam_V_ATPase_I
OR2A2	442361	genome.wustl.edu	37	7	143807420	143807420	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005480.2	+1	validated	p.L249	0.059	238	0%	206	26.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CNTNAP2	26047	genome.wustl.edu	37	7	147964176	147964176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.L1145F	0.170	580	0%	583	33.6%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
SSPO	23145	genome.wustl.edu	37	7	149519672	149519672	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.R4388*	1.000	21	0%	24	33.3%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ATG9B	285973	genome.wustl.edu	37	7	150721409	150721409	+	Silent	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173681.5	-1	validated	p.P34	0.575	21	0%	31	45.2%	0	-	-	-	-	NULL
ABCB8	11194	genome.wustl.edu	37	7	150731004	150731004	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007188.3	+1	reviewed	p.V136	1.000	53	0%	37	35.1%	18	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
MLL3	58508	genome.wustl.edu	37	7	151896364	151896364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.G1425S	1.000	213	0%	228	32.5%	0	-	probably_damaging(0.996)	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1626538	1626538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.S736I	0.999	95	0%	89	38.2%	0	-	benign(0.202)	tolerated(0.07)	neutral(0.339)	HMMPfam_GKAP
CSMD1	64478	genome.wustl.edu	37	8	3057320	3057320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.P1705S	1.000	104	0%	93	25.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DLC1	10395	genome.wustl.edu	37	8	12957014	12957014	+	Silent	SNP	C	C	T	rs189480946	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.P944	0.007	232	0%	246	34.6%	3	0%	-	-	-	NULL
INTS10	55174	genome.wustl.edu	37	8	19677892	19677892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018142.2	+1	validated	p.L102V	1.000	349	0.3%	289	35.3%	31	35.4%	benign(0.02)	tolerated(0.19)	neutral(0.051)	NULL
EGR3	1960	genome.wustl.edu	37	8	22548571	22548571	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004430.2	-1	reviewed	p.D193	1.000	179	0%	156	28.2%	6	66.6%	-	-	-	NULL
LOXL2	4017	genome.wustl.edu	37	8	23167400	23167400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002318.2	-1	reviewed	p.A554V	0.996	21	0%	21	28.6%	38	0%	probably_damaging(0.976)	tolerated(0.52)	neutral(0.426)	HMMPfam_Lysyl_oxidase
KIF13B	23303	genome.wustl.edu	37	8	28989889	28989889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015254.3	-1	validated	p.R960W	0.979	374	0%	300	30%	17	41.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NRG1	3084	genome.wustl.edu	37	8	32505766	32505766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013959.3	+1	reviewed	p.R177H	0.652	442	0.2%	458	32.8%	0	-	possibly_damaging(0.774)	deleterious(0.01)	deleterious(0.694)	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37729555	37729555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002814.2	-1	validated	p.Q922R	0.000	120	0%	114	28.1%	6	66.6%	possibly_damaging(0.55)	tolerated(0.09)	deleterious(0.483)	NULL
ENSG00000206610	0	genome.wustl.edu	37	8	38023624	38023624	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383883	-1	novel	NULL	0.092	28	0%	317	36.9%	0	-	-	-	-	-
CHRNA6	8973	genome.wustl.edu	37	8	42611583	42611584	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004198.2	-1	provisional	p.F253fs	0.943:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
PXDNL	137902	genome.wustl.edu	37	8	52336219	52336219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.G571W	0.016	367	0%	333	30.9%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PCMTD1	115294	genome.wustl.edu	37	8	52758276	52758278	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CCA	CCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052937.2	-1	validated	p.V118in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF53335
CYP7A1	1581	genome.wustl.edu	37	8	59410880	59410880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000780.3	-1	reviewed	p.H77N	1.000	270	0.4%	273	24.9%	0	-	probably_damaging(0.981)	tolerated(0.21)	deleterious(0.469)	HMMPfam_p450,superfamily_Cytochrome_P450
CHD7	55636	genome.wustl.edu	37	8	61778030	61778030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.E2844D	0.546	326	0.3%	363	25.9%	19	36.8%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
SULF1	23213	genome.wustl.edu	37	8	70533368	70533368	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.L492	1.000	134	0%	153	21.6%	38	0%	-	-	-	superfamily_Alkaline_phosphatase_core
PMP2	5375	genome.wustl.edu	37	8	82356797	82356797	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002677.3	-1	validated	p.Q96*	1.000	770	0%	909	24%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
E2F5	1875	genome.wustl.edu	37	8	86121540	86121540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001951.3	+1	reviewed	p.V260A	0.002	246	0%	342	45.6%	35	71.4%	benign(0)	tolerated(1)	-	NULL
CA1	759	genome.wustl.edu	37	8	86250487	86250487	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128829.2	-1	reviewed	p.R77*	0.984	646	0%	766	23.1%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
INTS8	55656	genome.wustl.edu	37	8	95884116	95884116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017864.2	+1	provisional	p.Q807K	1.000	269	0.7%	369	23.3%	81	24.6%	possibly_damaging(0.775)	tolerated(0.68)	neutral(0.290)	NULL
TSPYL5	85453	genome.wustl.edu	37	8	98289166	98289166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033512.2	-1	validated	p.Y303H	1.000	138	0%	155	24.5%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_NAP
RNF139	11236	genome.wustl.edu	37	8	125498512	125498512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007218.3	+1	reviewed	p.V208I	1.000	349	0%	453	23%	39	23%	benign(0.07)	tolerated(0.65)	neutral(0.008)	NULL
ADCY8	114	genome.wustl.edu	37	8	131826458	131826458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.R924C	1.000	288	0.7%	391	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NDRG1	10397	genome.wustl.edu	37	8	134274327	134274327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135242.1	-1	reviewed	p.P97T	1.000	110	0%	111	23.4%	259	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
ZFAT	57623	genome.wustl.edu	37	8	135622827	135622827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020863.3	-1	reviewed	p.R174W	0.255	598	0.2%	820	44.8%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139165152	139165152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.Q522H	0.000	232	0%	282	50%	0	-	possibly_damaging(0.852)	deleterious(0.05)	deleterious(0.673)	NULL
LOC100288108	100288108	genome.wustl.edu	37	8	140715011	140715011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342878.1	+1	model	p.A385T	0.997	84	0%	99	27.3%	0	-	-	-	-	NULL
TRAPPC9	83696	genome.wustl.edu	37	8	141468654	141468654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031466.5	-1	reviewed	p.A4T	0.001	6	0.000	9	0.556	0	-	unknown(0)	-	-	NULL
CYP11B1	1584	genome.wustl.edu	37	8	143956528	143956528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000497.3	-1	reviewed	p.A415T	0.358	130	0%	161	48.4%	0	-	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP11B2	1585	genome.wustl.edu	37	8	143994702	143994702	+	Missense_Mutation	SNP	G	G	A	rs78354466		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000498.3	-1	reviewed	p.R374W	1.000	20	0%	51	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
GPIHBP1	338328	genome.wustl.edu	37	8	144295772	144295772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178172.3	+1	validated	p.E43G	0.017	159	0%	297	56.2%	0	-	possibly_damaging(0.763)	deleterious(0.04)	deleterious(0.632)	NULL
NAPRT1	93100	genome.wustl.edu	37	8	144657499	144657499	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145201.4	-1	validated	p.D436	0.333	69	0%	70	25.7%	171	21.6%	-	-	-	NULL
EEF1D	1936	genome.wustl.edu	37	8	144662283	144662283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130053.1	-1	reviewed	p.V602M	1.000	91	0%	112	46.4%	1106	44.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_EF1_GNE,superfamily_eEF-1beta-like
PLEC	5339	genome.wustl.edu	37	8	145024638	145024638	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.I79	0.325	52	1.9%	65	32.3%	1	0%	-	-	-	HMMPfam_S10_plectin
TYRP1	7306	genome.wustl.edu	37	9	12695618	12695618	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000550.2	+1	reviewed	p.T163	0.997	220	0%	281	30.2%	3	66.6%	-	-	-	superfamily_Di-copper_centre
TYRP1	7306	genome.wustl.edu	37	9	12702411	12702414	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000550.2	+1	reviewed	p.N353fs	1.000:1.000:0.997:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Tyrosinase,superfamily_Di-copper_centre
C9orf93	203238	genome.wustl.edu	37	9	15657181	15657181	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.A293	0.997	190	0%	261	19.2%	0	-	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19324431	19324431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017925.4	+1	provisional	p.R391C	1.000	312	0.3%	345	24.3%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_dDENN,HMMSmart_SM00801
C9orf82	79886	genome.wustl.edu	37	9	26886120	26886120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024828.3	-1	validated	p.I191F	1.000	174	0%	178	20.2%	13	30.7%	possibly_damaging(0.671)	deleterious(0.03)	deleterious(0.603)	NULL
ACO1	48	genome.wustl.edu	37	9	32419047	32419047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.I224V	1.000	171	0%	236	52.5%	34	52.9%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
ACO1	48	genome.wustl.edu	37	9	32425989	32425989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.G448R	1.000	200	0%	250	12%	52	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
DDX58	23586	genome.wustl.edu	37	9	32493856	32493856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014314.3	-1	reviewed	p.R109H	0.971	254	0%	270	43.7%	7	28.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633755	32633755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.I608T	0.999	510	0%	453	26.5%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
BAG1	573	genome.wustl.edu	37	9	33264453	33264453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004323.5	-1	reviewed	p.K74E	0.999	44	0%	33	30.3%	31	48.3%	benign(0.224)	tolerated(0.06)	neutral(0.345)	NULL
NFX1	4799	genome.wustl.edu	37	9	33344086	33344086	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002504.3	+1	reviewed	p.C748	1.000	305	0%	292	29.5%	27	66.6%	-	-	-	NULL
DCAF12	25853	genome.wustl.edu	37	9	34093317	34093317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015397.3	-1	reviewed	p.V331I	0.959	183	0%	190	30.5%	58	37.9%	benign(0)	tolerated(1)	-	HMMSmart_WD40
POLR1E	64425	genome.wustl.edu	37	9	37486061	37486061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022490.1	+1	provisional	p.L6S	0.981	100	0%	97	15.5%	7	28.5%	benign(0.079)	deleterious(0.03)	neutral(0.370)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74340621	74340621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.A685V	1.000	214	0%	196	30.1%	8	25%	benign(0.029)	tolerated(0.45)	neutral(0.013)	superfamily_Pectin lyase-like
GDA	9615	genome.wustl.edu	37	9	74817504	74817504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004293.3	+1	validated	p.G77E	1.000	245	0.4%	224	29%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases
FRMD3	257019	genome.wustl.edu	37	9	85863110	85863110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174938.4	-1	validated	p.R506H	0.354	199	0%	143	32.2%	0	-	benign(0.32)	tolerated(0.08)	neutral(0.400)	NULL
HNRNPK	3190	genome.wustl.edu	37	9	86591916	86591916	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002140.3	-1	reviewed	p.R69	0.999	366	0%	308	37.3%	369	43.9%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
DAPK1	1612	genome.wustl.edu	37	9	90219898	90219898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004938.2	+1	reviewed	p.R31H	0.999	71	0%	45	64.4%	2	50%	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SPIN1	10927	genome.wustl.edu	37	9	91090188	91090188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006717.2	+1	validated	p.S262F	1.000	226	0%	170	45.9%	13	69.2%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
OMD	4958	genome.wustl.edu	37	9	95179731	95179731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005014.2	-1	validated	p.D37G	0.905	265	0%	167	41.3%	0	-	benign(0.026)	tolerated(0.21)	neutral(0.045)	superfamily_L domain-like
SVEP1	79987	genome.wustl.edu	37	9	113169275	113169275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.R2869G	0.003	59	0%	47	40.4%	7	0%	benign(0.078)	tolerated(0.33)	neutral(0.029)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ASTN2	23245	genome.wustl.edu	37	9	119413952	119413952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.R976H	1.000	82	0%	64	46.9%	3	100%	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00457
CNTRL	11064	genome.wustl.edu	37	9	123911032	123911032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.R1181H	0.000	204	0%	154	51.3%	3	100%	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
PSMB7	5695	genome.wustl.edu	37	9	127115882	127115882	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002799.2	-1	reviewed	p.S277fs	1.000	-	-	-	-	-	-	-	-	-	NULL
TOR2A	27433	genome.wustl.edu	37	9	130494961	130494961	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085347.1	-1	validated	p.G201	0.575	37	0%	15	53.3%	23	86.9%	-	-	-	HMMSmart_SM00382,HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases
AK1	203	genome.wustl.edu	37	9	130635089	130635089	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000476.2	-1	reviewed	p.V29	0.957	91	0%	49	49%	66	90.9%	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
ST6GALNAC6	30815	genome.wustl.edu	37	9	130653016	130653016	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013443.3	-1	provisional	p.R202*	1.000	65	0%	30	50%	7	14.2%	-	-	-	HMMPfam_Glyco_transf_29
DOLK	22845	genome.wustl.edu	37	9	131709537	131709537	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014908.3	-1	reviewed	p.L16	0.182	22	0%	16	43.8%	15	86.6%	-	-	-	NULL
NUP188	23511	genome.wustl.edu	37	9	131768559	131768559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015354.1	+1	validated	p.L1662H	1.000	108	0%	80	43.8%	64	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACFD1	11094	genome.wustl.edu	37	9	136330467	136330467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017586.2	+1	validated	p.L73P	1.000	169	0%	98	52%	27	88.8%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_Cg6151-P
KCNT1	57582	genome.wustl.edu	37	9	138649062	138649062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.P221S	1.000	94	0%	44	47.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CLIC3	9022	genome.wustl.edu	37	9	139889256	139889256	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004669.2	-1	reviewed	p.P196	0.001	29	0%	20	45%	11	63.6%	-	-	-	superfamily_GST_C_like
SLC34A3	142680	genome.wustl.edu	37	9	140127103	140127105	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080877.2	+1	reviewed	p.F86in_frame_del	1.000:0.994:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Na_Pi_cotrans
NELF	26012	genome.wustl.edu	37	9	140347301	140347301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371482	-1	known	p.G4W	0.000	88	0%	50	46%	1	100%	unknown(0)	-	-	NULL
ZMYND11	10771	genome.wustl.edu	37	10	294847	294847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006624.4	+1	reviewed	p.R462H	1.000	189	0%	246	27.6%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PITRM1	10531	genome.wustl.edu	37	10	3189413	3189413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014889.2	-1	validated	p.M755I	0.995	380	0%	375	30.9%	174	44.8%	benign(0.177)	tolerated(0.46)	neutral(0.029)	superfamily_LuxS/MPP-like metallohydrolase
SEC61A2	55176	genome.wustl.edu	37	10	12211361	12211361	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024576.1	+1	reviewed	NULL	0.000	169	0%	223	30.9%	1	100%	-	-	-	-
FRMD4A	55691	genome.wustl.edu	37	10	13702499	13702499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018027.3	-1	validated	p.L572P	1.000	202	0%	250	27.6%	8	25%	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
RPP38	10557	genome.wustl.edu	37	10	15145354	15145354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097590.1	+1	validated	p.R14H	0.617	108	0%	110	30%	20	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FAM171A1	221061	genome.wustl.edu	37	10	15255015	15255015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.E858K	0.954	273	0.4%	233	28.8%	25	44%	benign(0.01)	tolerated(0.16)	neutral(0.060)	HMMPfam_UPF0560
CACNB2	783	genome.wustl.edu	37	10	18823074	18823074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.A375V	1.000	346	0%	347	30.8%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEBL	10529	genome.wustl.edu	37	10	21074740	21074740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006393.2	-1	reviewed	p.G994D	1.000	157	0%	162	30.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
C10orf114	399726	genome.wustl.edu	37	10	21785689	21785689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010911.2	-1	validated	p.R19C	0.907	48	0%	33	27.3%	1	0%	possibly_damaging(0.817)	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24820877	24820877	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.S1067	0.029	61	0%	63	38.1%	34	35.2%	-	-	-	NULL
ARMC4	55130	genome.wustl.edu	37	10	28229593	28229593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.R629C	0.999	158	0%	160	30.6%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PARD3	56288	genome.wustl.edu	37	10	34985325	34985325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.V48A	1.000	383	0%	383	28.7%	7	57.1%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
NAMPTL	646309	genome.wustl.edu	37	10	36812542	36812542	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440465	-1	known	p.L207	0.996	228	0.4%	257	26.8%	0	-	-	-	-	HMMPfam_NAPRTase
ANKRD30A	91074	genome.wustl.edu	37	10	37431053	37431053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.A354T	0.154	291	0%	309	32.4%	0	-	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	NULL
ZNF248	57209	genome.wustl.edu	37	10	38121604	38121604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021045.1	-1	provisional	p.A227T	0.000	156	0%	159	31.4%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
HNRNPF	3185	genome.wustl.edu	37	10	43882343	43882343	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098204.1	-1	reviewed	p.E330	1.000	181	0%	199	36.2%	211	49.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ARHGAP22	58504	genome.wustl.edu	37	10	49667828	49667828	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021226.2	-1	validated	p.R186	0.005	81	0%	67	34.3%	1	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
WDFY4	57705	genome.wustl.edu	37	10	49983821	49983822	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.H947fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	62038606	62038606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.A114T	1.000	431	0.5%	403	33.3%	3	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CTNNA3	29119	genome.wustl.edu	37	10	68526158	68526158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127384.1	-1	validated	p.I382T	1.000	376	0%	318	29.6%	0	-	possibly_damaging(0.857)	deleterious(0.02)	deleterious(0.714)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
HERC4	26091	genome.wustl.edu	37	10	69714797	69714797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022079.2	-1	validated	p.R714C	1.000	561	0%	481	29.1%	21	28.5%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	superfamily_Hect E3 ligase catalytic domain
UNC5B	219699	genome.wustl.edu	37	10	73047433	73047433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170744.3	+1	validated	p.R271Q	1.000	49	0%	33	30.3%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SLC29A3	55315	genome.wustl.edu	37	10	73082690	73082690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373189	+1	known	p.L60P	1.000	72	0%	76	32.9%	8	62.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CAMK2G	818	genome.wustl.edu	37	10	75606989	75606989	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172171.1	-1	reviewed	p.W271*	1.000	419	0%	436	32.3%	5	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PTEN	5728	genome.wustl.edu	37	10	89711908	89711910	+	In_Frame_Del	DEL	TAT	TAT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TAT	TAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Y178in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89711988	89711989	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.I203fs	0.999:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
KIF20B	9585	genome.wustl.edu	37	10	91492736	91492736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.S783N	0.000	118	0%	131	26%	6	66.6%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97918714	97918714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371192	+1	known	p.P879S	0.308	153	0%	125	25.6%	6	33.3%	-	-	-	NULL
PSD	5662	genome.wustl.edu	37	10	104173622	104173622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002779.3	-1	provisional	p.E486A	0.994	54	0%	69	29%	0	-	benign(0.41)	tolerated(0.08)	neutral(0.432)	NULL
SFXN2	118980	genome.wustl.edu	37	10	104486763	104486763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178858.4	+1	validated	p.G61S	1.000	77	0%	71	36.6%	11	36.3%	possibly_damaging(0.864)	tolerated(0.19)	neutral(0.384)	HMMPfam_Mtc
TAF5	6877	genome.wustl.edu	37	10	105139711	105139711	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006951.3	+1	reviewed	p.R450*	1.000	212	0%	236	30.9%	0	-	-	-	-	superfamily_WD40 repeat-like
SLK	9748	genome.wustl.edu	37	10	105762837	105762837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.P634L	0.001	139	0%	225	33.3%	12	41.6%	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_Protein kinase-like (PK-like)
SLK	9748	genome.wustl.edu	37	10	105779663	105779663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.R1102C	1.000	135	0%	181	27.6%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
NHLRC2	374354	genome.wustl.edu	37	10	115668284	115668284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198514.2	+1	provisional	p.Y724H	0.036	179	0%	177	31.6%	13	15.3%	benign(0.005)	tolerated(0.45)	neutral(0.012)	NULL
SLC18A2	6571	genome.wustl.edu	37	10	119003744	119003744	+	Silent	SNP	C	C	T	rs182578089	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003054.4	+1	reviewed	p.N128	0.507	125	0.8%	137	29.2%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
HMX3	340784	genome.wustl.edu	37	10	124896852	124896854	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105574.1	+1	validated	p.K229in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CHST15	51363	genome.wustl.edu	37	10	125780753	125780755	+	In_Frame_Del	DEL	GGG	GGG	-	rs5788647		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GGG	GGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421115	-1	known	p.P455in_frame_del	0.985:0.982:0.979	-	-	-	-	-	-	-	-	-	NULL
ODF3	113746	genome.wustl.edu	37	11	197684	197684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053280.3	+1	provisional	p.R78M	0.996	79	0%	56	28.6%	0	-	possibly_damaging(0.928)	deleterious(0.03)	deleterious(0.740)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1263791	1263791	+	Missense_Mutation	SNP	C	C	T	rs141754305	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T1897M	0.000	178	0%	218	37.2%	2	100%	probably_damaging(0.957)	-	-	NULL
IGF2-AS1	51214	genome.wustl.edu	37	11	2167572	2167572	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381361	+1	known	p.P134	0.000	112	0.9%	82	25.6%	0	-	-	-	-	NULL
TSPAN32	10077	genome.wustl.edu	37	11	2335733	2335734	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139022.2	+1	reviewed	p.K159fs	0.151:0.002	-	-	-	-	-	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CARS	833	genome.wustl.edu	37	11	3060449	3060449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014437.1	-1	reviewed	p.L209S	1.000	100	0%	103	29.1%	31	32.2%	benign(0.037)	tolerated(0.07)	neutral(0.321)	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
NUP98	4928	genome.wustl.edu	37	11	3726449	3726449	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429801	-1	known	p.V77I	0.999	473	0.2%	563	32.3%	11	9%	-	-	-	NULL
OR51S1	119692	genome.wustl.edu	37	11	4869858	4869858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004758.1	-1	provisional	p.R194H	0.000	77	0%	98	53.1%	0	-	benign(0.064)	tolerated(0.12)	neutral(0.265)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51T1	401665	genome.wustl.edu	37	11	4903499	4903499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004759.1	+1	provisional	p.R151C	1.000	427	0%	415	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
C11orf42	160298	genome.wustl.edu	37	11	6231104	6231104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173525.2	+1	validated	p.N33D	0.982	200	0%	185	31.4%	0	-	benign(0.253)	tolerated(0.32)	neutral(0.050)	NULL
TRIM3	10612	genome.wustl.edu	37	11	6472143	6472143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006458.2	-1	reviewed	p.A617T	0.999	68	0%	45	44.4%	25	40%	benign(0)	tolerated(0.91)	-	superfamily_NHL repeat
DNHD1	144132	genome.wustl.edu	37	11	6566210	6566210	+	Silent	SNP	C	C	T	rs189772244	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.S1347	0.003	207	0.5%	173	23.7%	0	-	-	-	-	HMMPfam_DHC_N2
RRP8	23378	genome.wustl.edu	37	11	6623129	6623129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015324.2	-1	provisional	p.H139R	0.014	574	0%	603	26.9%	14	28.5%	benign(0.006)	tolerated(0.18)	neutral(0.056)	NULL
ILK	3611	genome.wustl.edu	37	11	6631462	6631462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014794.1	+1	reviewed	p.R388W	0.998	170	0.6%	205	26.3%	103	53.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
TPP1	1200	genome.wustl.edu	37	11	6636527	6636527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000391.3	-1	reviewed	p.P434T	0.586	371	0.3%	359	25.6%	106	33%	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_Subtilisin-like
TPP1	1200	genome.wustl.edu	37	11	6638353	6638353	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000391.3	-1	reviewed	p.S180	0.996	121	0%	124	26.6%	48	25%	-	-	-	superfamily_Protease propeptides/inhibitors
NLRP14	338323	genome.wustl.edu	37	11	7065016	7065016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176822.3	+1	reviewed	p.Y587N	0.951	314	0%	360	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SBF2	81846	genome.wustl.edu	37	11	9805971	9805971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.T1749I	0.997	280	0%	239	22.6%	13	61.5%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PIK3C2A	5286	genome.wustl.edu	37	11	17112906	17112906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.T1618M	1.000	984	0.1%	1048	30.2%	18	61.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SPTY2D1	144108	genome.wustl.edu	37	11	18638470	18638470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194285.2	-1	validated	p.A43T	1.000	577	0%	519	25.2%	0	-	possibly_damaging(0.645)	deleterious(0)	deleterious(0.670)	NULL
NAV2	89797	genome.wustl.edu	37	11	19955428	19955428	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.G546	0.973	74	0%	96	31.2%	0	-	-	-	-	NULL
KIF18A	81930	genome.wustl.edu	37	11	28056947	28056947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031217.3	-1	validated	p.R831W	1.000	349	0%	282	25.5%	15	33.3%	benign(0.141)	tolerated(0.27)	neutral(0.045)	NULL
CD44	960	genome.wustl.edu	37	11	35227669	35227669	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428726	+1	known	p.L409P	0.084	256	0.4%	270	30.4%	83	34.9%	-	-	-	NULL
LRRC4C	57689	genome.wustl.edu	37	11	40136965	40136965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020929.1	-1	validated	p.L293P	1.000	172	0%	157	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
AMBRA1	55626	genome.wustl.edu	37	11	46419046	46419046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017749.2	-1	validated	p.S1194N	0.984	193	0.5%	202	31.7%	34	47%	benign(0)	tolerated(1)	-	NULL
HARBI1	283254	genome.wustl.edu	37	11	46625381	46625381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173811.3	-1	validated	p.N250S	0.999	265	0%	291	32.3%	13	46.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000205035	0	genome.wustl.edu	37	11	49597987	49597987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357667	+1	known	p.Y63H	1.000	254	0.8%	227	29.1%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
OR7E5P	219445	genome.wustl.edu	37	11	55746928	55746928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399170	-1	known	p.R177C	0.000	418	0%	342	29.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MS4A10	341116	genome.wustl.edu	37	11	60561564	60561564	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206893.3	+1	validated	p.Y160*	0.856	222	0%	168	32.7%	0	-	-	-	-	HMMPfam_CD20
FEN1	2237	genome.wustl.edu	37	11	61563474	61563474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004111.4	+1	reviewed	p.Q214P	1.000	112	0%	92	28.3%	52	34.6%	benign(0.104)	deleterious(0.01)	neutral(0.414)	HMMPfam_XPG_I,HMMSmart_SM00484,superfamily_PIN domain-like
AHNAK	79026	genome.wustl.edu	37	11	62296858	62296858	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.K1677	0.993	734	0%	771	33.6%	8	37.5%	-	-	-	NULL
TAF6L	10629	genome.wustl.edu	37	11	62553790	62553790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006473.2	+1	reviewed	p.V340A	1.000	222	0.5%	242	28.1%	29	37.9%	probably_damaging(0.991)	tolerated(0.14)	deleterious(0.694)	NULL
CHRM1	1128	genome.wustl.edu	37	11	62677638	62677638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000738.2	-1	reviewed	p.Q312R	0.575	63	0%	75	36%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OTUB1	55611	genome.wustl.edu	37	11	63756170	63756170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428192	+1	known	p.R30Q	0.028	56	0%	31	22.6%	155	42.5%	unknown(0)	-	-	NULL
NRXN2	9379	genome.wustl.edu	37	11	64418868	64418868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.S926N	0.996	104	0%	128	42.2%	1	0%	possibly_damaging(0.727)	tolerated(0.38)	neutral(0.282)	superfamily_Concanavalin A-like lectins/glucanases
TIGD3	220359	genome.wustl.edu	37	11	65124181	65124181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145719.2	+1	reviewed	p.V301A	0.996	16	0%	12	41.7%	1	0%	benign(0.099)	deleterious(0.01)	neutral(0.413)	HMMPfam_DDE
FRMD8	83786	genome.wustl.edu	37	11	65168249	65168251	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031904.3	+1	validated	p.E331in_frame_del	0.999:1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
EHBP1L1	254102	genome.wustl.edu	37	11	65349805	65349805	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099409.1	+1	validated	p.S554	0.000	42	0%	52	42.3%	0	-	-	-	-	NULL
CATSPER1	117144	genome.wustl.edu	37	11	65792951	65792951	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.H300	0.000	796	0%	984	30.3%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
BBS1	582	genome.wustl.edu	37	11	66298490	66298492	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024649.4	+1	reviewed	p.F535in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70118531	70118531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003626.2	+1	reviewed	p.A85T	1.000	105	0%	114	28.1%	7	14.2%	benign(0.333)	tolerated(1)	neutral(0.104)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71727223	71727223	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.E442	0.393	130	0%	119	32.8%	52	40.3%	-	-	-	NULL
DGAT2	84649	genome.wustl.edu	37	11	75509344	75509344	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032564.3	+1	validated	p.S294	1.000	134	0%	149	32.9%	1	0%	-	-	-	HMMPfam_DAGAT
WNT11	7481	genome.wustl.edu	37	11	75898115	75898115	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004626.2	-1	reviewed	p.C353	1.000	72	0%	69	36.2%	1	100%	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
CAPN5	726	genome.wustl.edu	37	11	76804747	76804747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004055.4	+1	reviewed	p.R62H	1.000	62	0%	47	29.8%	3	33.3%	benign(0.001)	tolerated(0.64)	neutral(0.003)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
GAB2	9846	genome.wustl.edu	37	11	77991782	77991782	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.Q81*	1.000	325	0%	314	34.1%	1	100%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FAT3	120114	genome.wustl.edu	37	11	92533622	92533622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.Q2481H	1.000	259	0%	259	31.7%	0	-	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
KIAA1731	85459	genome.wustl.edu	37	11	93463415	93463415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.R2596*	1.000	377	0%	366	31.4%	22	50%	-	-	-	NULL
PGR	5241	genome.wustl.edu	37	11	100996755	100996757	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000926.4	-1	reviewed	p.F591in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ATM	472	genome.wustl.edu	37	11	108115662	108115662	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.R270	1.000	264	0%	330	31.5%	2	50%	-	-	-	superfamily_ARM repeat
SIK2	23235	genome.wustl.edu	37	11	111487007	111487007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015191.1	+1	validated	p.V59A	1.000	321	0%	383	24.3%	6	33.3%	possibly_damaging(0.95)	tolerated(0.34)	neutral(0.417)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
APOA5	116519	genome.wustl.edu	37	11	116661546	116661546	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052968.4	-1	reviewed	p.T133	0.036	27	0%	22	31.8%	0	-	-	-	-	HMMPfam_Apolipoprotein,superfamily_SSF47162
ROBO4	54538	genome.wustl.edu	37	11	124761263	124761263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019055.5	-1	validated	p.R627H	0.004	187	0%	166	25.3%	8	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
PKNOX2	63876	genome.wustl.edu	37	11	125281735	125281735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022062.2	+1	validated	p.R304C	1.000	321	0%	259	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CDON	50937	genome.wustl.edu	37	11	125873938	125873938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016952.4	-1	validated	p.H629Y	1.000	145	0%	130	33.1%	0	-	benign(0.109)	tolerated(1)	neutral(0.009)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SRPR	6734	genome.wustl.edu	37	11	126133917	126133917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003139.3	-1	reviewed	p.T604M	1.000	148	0%	155	26.5%	247	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRP54,superfamily_SSF52540
ETS1	2113	genome.wustl.edu	37	11	128350152	128350152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143820.1	-1	validated	p.R353W	1.000	189	0%	152	33.6%	14	0%	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	superfamily_SSF46785
TULP3	7289	genome.wustl.edu	37	12	3031532	3031532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003324.4	+1	reviewed	p.S120T	0.005	172	0%	172	32%	11	36.3%	probably_damaging(0.963)	tolerated(0.16)	neutral(0.465)	NULL
CD9	928	genome.wustl.edu	37	12	6346982	6346982	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001769.2	+1	reviewed	p.R225	0.856	367	0%	402	36.3%	911	41.1%	-	-	-	NULL
TPI1	7167	genome.wustl.edu	37	12	6978336	6978336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000365.5	+1	reviewed	p.E105K	1.000	190	0%	302	30.1%	681	46.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIM,superfamily_Triosephosphate isomerase (TIM)
SPSB2	84727	genome.wustl.edu	37	12	6980375	6980375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032641.3	-1	reviewed	p.R258H	0.998	98	0%	103	35.9%	20	45%	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	HMMPfam_SOCS_box
ATN1	1822	genome.wustl.edu	37	12	7047954	7047954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007026.1	+1	reviewed	p.R943H	0.988	48	0%	20	35%	131	43.5%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_Atrophin-1
PEX5	5830	genome.wustl.edu	37	12	7343032	7343032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131023.1	+1	reviewed	p.L20P	1.000	115	0%	129	24%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRH1	5554	genome.wustl.edu	37	12	11035136	11035138	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428168	-1	known	p.P87in_frame_del	0.000:0.000:0.002	-	-	-	-	-	-	-	-	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14578136	14578137	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.M430fs	0.973:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18658288	18658288	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004570.4	+1	reviewed	p.V1031	1.000	631	0%	612	28.9%	0	-	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),PatternScan_PI3_4_KINASE_2
BCAT1	586	genome.wustl.edu	37	12	24989523	24989525	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005504.6	-1	reviewed	p.E275in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Aminotran_4,superfamily_Aminotrans_IV,PatternScan_AA_TRANSFER_CLASS_4
TSPAN11	441631	genome.wustl.edu	37	12	31106997	31106999	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080509.2	+1	validated	p.F27in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Tetraspannin
ALG10B	144245	genome.wustl.edu	37	12	38714512	38714512	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013620.3	+1	validated	p.L307	0.943	753	0%	668	29.8%	6	66.6%	-	-	-	HMMPfam_DIE2_ALG10
ABCD2	225	genome.wustl.edu	37	12	39998580	39998580	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005164.3	-1	reviewed	p.D463	0.987	373	0%	314	30.6%	0	-	-	-	-	NULL
SLC38A2	54407	genome.wustl.edu	37	12	46756865	46756867	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018976.4	-1	validated	p.L373in_frame_del	1.000:1.000:0.894	-	-	-	-	-	-	-	-	-	HMMPfam_Aa_trans
COL2A1	1280	genome.wustl.edu	37	12	48370615	48370615	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001844.4	-1	reviewed	p.Q1139*	1.000	22	0%	31	19.4%	84	1.1%	-	-	-	HMMPfam_Collagen
KRT85	3891	genome.wustl.edu	37	12	52756054	52756054	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.L427	1.000	179	0%	159	31.4%	0	-	-	-	-	HMMPfam_Filament,PatternScan_IF
RARG	5916	genome.wustl.edu	37	12	53608385	53608385	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000966.4	-1	validated	p.R161*	1.000	253	0%	293	31.4%	8	0%	-	-	-	HMMPfam_zf-C4,superfamily_Nuclear receptor ligand-binding domain
C12orf10	60314	genome.wustl.edu	37	12	53700052	53700052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021640.3	+1	validated	p.S238N	1.000	237	0.4%	193	26.4%	100	42%	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	HMMPfam_UPF0160
HOXC5	3222	genome.wustl.edu	37	12	54428190	54428190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018953.2	+1	reviewed	p.N195D	1.000	130	0%	91	28.6%	2	0%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
GDF11	10220	genome.wustl.edu	37	12	56143386	56143386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005811.3	+1	reviewed	p.R315Q	1.000	50	0%	62	40.3%	55	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
OBFC2B	79035	genome.wustl.edu	37	12	56622880	56622880	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024068.3	+1	validated	p.P174fs	0.998	-	-	-	-	-	-	-	-	-	NULL
APOF	319	genome.wustl.edu	37	12	56755931	56755933	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001638.2	-1	reviewed	p.M19in_frame_del	0.000:0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
SDR9C7	121214	genome.wustl.edu	37	12	57323179	57323179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148897.2	-1	reviewed	p.R240H	0.000	108	0%	76	27.6%	0	-	benign(0.002)	tolerated(0.24)	neutral(0.037)	superfamily_NAD(P)-bd
GPR182	11318	genome.wustl.edu	37	12	57389040	57389040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007264.3	+1	reviewed	p.T16I	0.031	171	0%	151	33.8%	0	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
MBD6	114785	genome.wustl.edu	37	12	57922979	57922979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052897.3	+1	validated	p.R992C	1.000	92	1.1%	80	21.2%	73	42.4%	unknown(0)	-	-	NULL
SLC26A10	65012	genome.wustl.edu	37	12	58014821	58014821	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440686	+1	known	p.R70C	0.891	37	0%	20	25%	1	0%	-	-	-	NULL
TMEM5	10329	genome.wustl.edu	37	12	64202605	64202605	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014254.1	+1	provisional	p.D355	0.933	161	0%	133	27.1%	22	27.2%	-	-	-	NULL
C12orf56	115749	genome.wustl.edu	37	12	64746807	64746807	+	Silent	SNP	C	C	T	rs147571015	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099676.2	-1	validated	p.S94	0.222	313	0.3%	308	32.5%	0	-	-	-	-	NULL
IRAK3	11213	genome.wustl.edu	37	12	66605326	66605326	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007199.2	+1	reviewed	p.V179	0.746	252	0%	261	34.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CPM	1368	genome.wustl.edu	37	12	69279630	69279630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005502.2	-1	reviewed	p.K67R	0.996	453	0%	389	30.8%	17	5.8%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
LRRC10	376132	genome.wustl.edu	37	12	70004063	70004063	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201550.2	-1	provisional	p.L186	1.000	122	0%	145	25.5%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
PTPRB	5787	genome.wustl.edu	37	12	70949046	70949046	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.D1679	0.912	145	0%	184	23.9%	2	0%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
OTOGL	283310	genome.wustl.edu	37	12	80613571	80613575	+	Frame_Shift_Del	DEL	TTTTT	TTTTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TTTTT	TTTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.F16fs	0.783:0.235:0.100:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81769669	81769669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.R346H	1.000	785	0%	793	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP2B1	490	genome.wustl.edu	37	12	90049509	90049509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001682.2	-1	reviewed	p.S52N	1.000	209	0.5%	214	35.5%	1	0%	benign(0.273)	tolerated(0.19)	neutral(0.079)	HMMPfam_Cation_ATPase_N,superfamily_SSF81665
LUM	4060	genome.wustl.edu	37	12	91497991	91497991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002345.3	-1	reviewed	p.P323L	0.006	291	0%	274	27%	261	0%	benign(0.002)	tolerated(0.46)	neutral(0.012)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CLLU1OS	574016	genome.wustl.edu	37	12	92814871	92814871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025232.1	-1	provisional	p.A74V	0.000	918	0.3%	978	34.4%	2	0%	unknown(0)	-	-	NULL
NR1H4	9971	genome.wustl.edu	37	12	100955769	100955769	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005123.2	+1	provisional	p.L391	1.000	176	0%	195	29.2%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
POLR3B	55703	genome.wustl.edu	37	12	106848396	106848396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	p.P734S	1.000	340	0.3%	301	33.2%	5	60%	possibly_damaging(0.891)	deleterious(0.02)	deleterious(0.734)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
ASCL4	121549	genome.wustl.edu	37	12	108169124	108169124	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203436.2	+1	validated	p.D44	0.229	13	0%	16	31.2%	0	-	-	-	-	NULL
ACACB	32	genome.wustl.edu	37	12	109696862	109696862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.L2149M	0.986	159	0%	146	23.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
TRPV4	59341	genome.wustl.edu	37	12	110236702	110236702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021625.4	-1	reviewed	p.S290L	1.000	49	0%	47	36.2%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TCTN1	79600	genome.wustl.edu	37	12	111080146	111080146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082538.2	+1	reviewed	p.R428Q	0.767	184	0%	197	34.5%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HVCN1	84329	genome.wustl.edu	37	12	111088053	111088053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040107.1	-1	validated	p.R226W	1.000	516	0%	544	23.7%	9	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C12orf51	283450	genome.wustl.edu	37	12	112681281	112681281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.R1190W	1.000	94	0%	81	35.8%	2	100%	probably_damaging(0.999)	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112690234	112690234	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311694	-1	known	p.A645V	1.000	177	0.6%	190	26.8%	5	60%	-	-	-	NULL
PLBD2	196463	genome.wustl.edu	37	12	113822039	113822039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173542.3	+1	validated	p.A363T	1.000	31	0%	41	29.3%	32	31.2%	benign(0.009)	tolerated(0.4)	neutral(0.017)	HMMPfam_Phospholip_B
KSR2	283455	genome.wustl.edu	37	12	118199259	118199259	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173598.4	-1	validated	p.P152	0.918	35	0%	39	33.3%	0	-	-	-	-	NULL
GCN1L1	10985	genome.wustl.edu	37	12	120602185	120602185	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006836.1	-1	validated	p.A601	0.000	97	0%	81	38.3%	6	33.3%	-	-	-	superfamily_ARM repeat
DNAH10	196385	genome.wustl.edu	37	12	124297859	124297859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.H980R	1.000	318	0%	294	32.3%	0	-	benign(0.009)	tolerated(0.43)	neutral(0.014)	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130892334	130892334	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015347.4	-1	validated	p.T954	0.000	97	1%	137	30.7%	0	-	unknown(0)	-	-	superfamily_SH3-domain
LOC100288577	100288577	genome.wustl.edu	37	12	132425907	132425907	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343226.1	-1	model	p.Q149*	1.000	127	0%	124	34.7%	65	36.9%	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132496112	132496112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.R1124H	1.000	437	0%	411	28.7%	4	50%	unknown(0)	-	-	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
POLE	5426	genome.wustl.edu	37	12	133250162	133250162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.Q453R	1.000	39	0%	35	28.6%	4	100%	possibly_damaging(0.522)	tolerated(0.07)	deleterious(0.495)	HMMSmart_POLBc,superfamily_RNaseH_fold
PARP4	143	genome.wustl.edu	37	13	25005613	25005613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006437.3	-1	reviewed	p.D1583G	1.000	264	0%	330	29.1%	71	45%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
ATP12A	479	genome.wustl.edu	37	13	25283581	25283581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001676.5	+1	reviewed	p.R858M	0.999	79	0%	58	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
FAM123A	219287	genome.wustl.edu	37	13	25744539	25744539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152704.2	-1	validated	p.A407T	0.016	61	0%	43	32.6%	0	-	benign(0.004)	tolerated(0.57)	neutral(0.006)	HMMPfam_WTX
NBEA	26960	genome.wustl.edu	37	13	35644985	35644985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.V523F	1.000	638	0%	617	30%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	superfamily_ARM repeat
ZC3H13	23091	genome.wustl.edu	37	13	46542015	46542016	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015070.3	-1	validated	p.R1316fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LRCH1	23143	genome.wustl.edu	37	13	47262024	47262024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015116.2	+1	reviewed	p.L287P	1.000	141	0%	168	29.2%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
PHF11	51131	genome.wustl.edu	37	13	50092190	50092190	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040443.1	+1	validated	p.G121*	1.000	191	0%	222	33.3%	27	3.7%	-	-	-	HMMSmart_PHD
ALG11	440138	genome.wustl.edu	37	13	52598159	52598159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004127.1	+1	provisional	p.Y98C	0.989	268	0%	295	27.1%	3	100%	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_SSF53756
PCDH17	27253	genome.wustl.edu	37	13	58208037	58208037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.N453D	1.000	22	0%	14	57.1%	2	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DZIP1	22873	genome.wustl.edu	37	13	96236990	96236992	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198968.2	-1	validated	p.E841in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZIC2	7546	genome.wustl.edu	37	13	100637238	100637238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007129.2	+1	reviewed	p.R372W	1.000	148	0%	111	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC643677	643677	genome.wustl.edu	37	13	103392095	103392095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.V3580G	0.005	681	0%	637	34.1%	0	-	-	-	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109704761	109704761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.S974G	0.946	344	0.3%	335	27.5%	0	-	benign(0.291)	tolerated(0.48)	neutral(0.100)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL4A2	1284	genome.wustl.edu	37	13	111111172	111111172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.P496L	0.452	137	0%	123	23.6%	121	4.1%	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
CARS2	79587	genome.wustl.edu	37	13	111299500	111299500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024537.2	-1	validated	p.M381V	0.835	43	0%	37	21.6%	104	32.6%	benign(0)	tolerated(1)	-	superfamily_tRNAsyn_1a_bind
PCID2	55795	genome.wustl.edu	37	13	113851420	113851420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000246505	-1	known	p.R113Q	0.000	224	0%	207	24.2%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
ATP4B	496	genome.wustl.edu	37	13	114306019	114306019	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000705.3	-1	reviewed	p.N193	0.194	44	0%	32	40.6%	0	-	-	-	-	HMMPfam_Na_K-ATPase
UPF3A	65110	genome.wustl.edu	37	13	115064476	115064476	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023011.2	+1	reviewed	e8+1	1.000	127	0%	140	34.3%	0	-	-	-	-	-
ARHGEF40	55701	genome.wustl.edu	37	14	21542956	21542958	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018071.3	+1	validated	p.G360in_frame_del	0.797:0.830:0.859	-	-	-	-	-	-	-	-	-	NULL
PSMB5	5693	genome.wustl.edu	37	14	23496970	23496970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144932.1	-1	reviewed	p.I192V	0.001	279	0%	404	29.7%	10	0%	unknown(0)	deleterious(0.02)	-	NULL
DCAF11	80344	genome.wustl.edu	37	14	24586201	24586201	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025230.4	+1	reviewed	p.E77	0.999	257	0%	295	28.1%	29	24.1%	-	-	-	NULL
IPO4	79711	genome.wustl.edu	37	14	24652208	24652208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024658.3	-1	validated	p.V799M	0.001	56	0%	65	27.7%	56	48.2%	benign(0.002)	tolerated(0.15)	neutral(0.241)	superfamily_ARM repeat
RABGGTA	5875	genome.wustl.edu	37	14	24735681	24735681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004581.3	-1	validated	p.V504I	0.017	133	0%	83	16.9%	92	42.3%	benign(0.022)	tolerated(0.6)	neutral(0.005)	superfamily_SSF52058
AKAP6	9472	genome.wustl.edu	37	14	32902973	32902973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.Q92K	1.000	128	0%	154	27.3%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	NULL
MIPOL1	145282	genome.wustl.edu	37	14	37777293	37777293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138731.5	+1	validated	p.M219T	1.000	419	0%	378	32%	9	55.5%	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	NULL
FOXA1	3169	genome.wustl.edu	37	14	38061527	38061527	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004496.2	-1	reviewed	p.G154	0.041	58	0%	47	25.5%	0	-	-	-	-	HMMPfam_Fork_head_N
MDGA2	161357	genome.wustl.edu	37	14	47530523	47530523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113498.1	-1	validated	p.T416I	1.000	238	0%	232	34.9%	0	-	benign(0.036)	tolerated(0.36)	neutral(0.022)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
TMX1	81542	genome.wustl.edu	37	14	51721200	51721200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030755.4	+1	validated	p.R269H	0.835	238	0%	249	22.1%	31	45.1%	possibly_damaging(0.625)	deleterious(0.01)	deleterious(0.624)	NULL
SAMD4A	23034	genome.wustl.edu	37	14	55226948	55226948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015589.4	+1	validated	p.K415E	1.000	15	0.000	9	0.444	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SOCS4	122809	genome.wustl.edu	37	14	55510291	55510291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080867.2	+1	reviewed	p.R178*	0.038	111	0%	136	27.2%	3	0%	-	-	-	NULL
HSPA2	3306	genome.wustl.edu	37	14	65009131	65009131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021979.3	+1	validated	p.V522L	1.000	57	0%	109	27.5%	18	0%	benign(0.051)	deleterious(0.01)	neutral(0.409)	HMMPfam_HSP70,superfamily_SSF100920
FNTB	2342	genome.wustl.edu	37	14	65511145	65511145	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002028.3	+1	validated	p.R313	0.050	85	1.2%	64	35.9%	20	55%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases
ZFYVE26	23503	genome.wustl.edu	37	14	68238929	68238929	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	e27-2	1.000	127	0%	157	31.2%	1	100%	-	-	-	-
RPS6KL1	83694	genome.wustl.edu	37	14	75378030	75378030	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031464.3	-1	validated	p.H164	0.234	127	0.8%	91	24.2%	1	100%	-	-	-	superfamily_Kinase_like
TTLL5	23093	genome.wustl.edu	37	14	76198742	76198743	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015072.4	+1	reviewed	p.P371fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
STON2	85439	genome.wustl.edu	37	14	81744756	81744756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033104.2	-1	provisional	p.T300M	0.017	167	0%	225	30.7%	5	60%	possibly_damaging(0.598)	tolerated(0.08)	deleterious(0.507)	NULL
FOXN3	1112	genome.wustl.edu	37	14	89817028	89817028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085471.1	-1	reviewed	p.Q223R	1.000	700	0%	658	25.2%	7	28.5%	possibly_damaging(0.872)	tolerated(0.2)	neutral(0.388)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93714899	93714899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.A682T	1.000	122	0%	120	35.8%	1	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
BDKRB2	624	genome.wustl.edu	37	14	96707784	96707784	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000623.3	+1	reviewed	p.S373	0.997	87	0%	82	22%	11	9%	-	-	-	NULL
BCL11B	64919	genome.wustl.edu	37	14	99642459	99642459	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138576.2	-1	reviewed	p.Q238	1.000	20	0%	24	45.8%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MIR770	768222	genome.wustl.edu	37	14	101318815	101318815	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390219	+1	known	NULL	0.914	63	0%	57	28.1%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102442083	102442083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.E97D	1.000	215	0%	273	29.7%	4	75%	benign(0.003)	tolerated(0.43)	neutral(0.013)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102452191	102452191	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.T543	0.006	151	0.7%	165	24.8%	4	50%	-	-	-	HMMPfam_DHC_N1
DYNC1H1	1778	genome.wustl.edu	37	14	102474645	102474645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R1983H	0.999	98	0%	118	33.9%	20	40%	possibly_damaging(0.811)	deleterious(0.01)	deleterious(0.711)	HMMSmart_AAA,superfamily_SSF52540
CDC42BPB	9578	genome.wustl.edu	37	14	103410339	103410339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006035.3	-1	reviewed	p.E1433K	0.821	111	0%	106	26.4%	46	45.6%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_CNH,HMMSmart_CNH
MARK3	4140	genome.wustl.edu	37	14	103932314	103932315	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128918.1	+1	validated	p.R264fs	0.999:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIF26A	26153	genome.wustl.edu	37	14	104641518	104641518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015656.1	+1	validated	p.A798V	0.780	49	0%	26	30.8%	0	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
INF2	64423	genome.wustl.edu	37	14	105172394	105172394	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022489.3	+1	validated	p.L242	1.000	23	0%	21	42.9%	18	33.3%	-	-	-	HMMPfam_Drf_FH3
AHNAK2	113146	genome.wustl.edu	37	14	105408861	105408861	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.G4309	0.004	355	0%	298	29.5%	0	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105412299	105412299	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.E3163	0.000	179	0%	178	65.7%	0	-	-	-	-	NULL
CDCA4	55038	genome.wustl.edu	37	14	105478244	105478244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017955.3	-1	reviewed	p.R8M	1.000	64	0%	53	28.3%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IGHG3	3502	genome.wustl.edu	37	14	106237580	106237580	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390550	-1	known	p.L55	0.046	319	0%	270	31.9%	88	1.1%	possibly_damaging(0.798)	deleterious(0.02)	deleterious(0.683)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
LOC646057	646057	genome.wustl.edu	37	15	20192889	20192889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716562.2	-1	model	p.R127C	0.438	103	0%	80	22.5%	0	-	-	-	-	HMMSmart_SM00409
OCA2	4948	genome.wustl.edu	37	15	28259951	28259951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000275.2	-1	reviewed	p.A339T	0.082	88	0%	85	30.6%	1	0%	benign(0.007)	tolerated(0.31)	neutral(0.027)	HMMPfam_CitMHS
ENSG00000215315	0	genome.wustl.edu	37	15	30337061	30337061	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400005	+1	known	p.F79V	1.000	125	0%	112	17%	1	0%	-	-	-	HMMPfam_MARVEL
OTUD7A	161725	genome.wustl.edu	37	15	31779725	31779725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130901.1	-1	provisional	p.H399Y	1.000	155	0%	130	27.7%	0	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
C15orf55	256646	genome.wustl.edu	37	15	34640181	34640181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175741.1	+1	validated	p.P10S	0.003	179	0%	203	29.6%	0	-	benign(0.091)	tolerated(0.61)	neutral(0.010)	NULL
C15orf55	256646	genome.wustl.edu	37	15	34646694	34646694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175741.1	+1	validated	p.R347C	1.000	239	0%	267	36.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
EIF2AK4	440275	genome.wustl.edu	37	15	40318214	40318214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013703.2	+1	validated	p.R1476C	1.000	327	0%	350	32%	42	42.8%	possibly_damaging(0.53)	deleterious(0.01)	deleterious(0.585)	NULL
DLL4	54567	genome.wustl.edu	37	15	41222123	41222123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019074.2	+1	reviewed	p.P49S	1.000	17	0%	20	35%	6	0%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_MNNL
SPTBN5	51332	genome.wustl.edu	37	15	42156154	42156154	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.P2294	0.176	182	0%	171	28.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EHD4	30844	genome.wustl.edu	37	15	42193050	42193052	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139265.3	-1	validated	p.E473in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_EH,superfamily_SSF47473
STRC	161497	genome.wustl.edu	37	15	43996941	43996941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381686	-1	known	p.L1311P	0.993	187	0.5%	146	25.3%	0	-	-	-	-	NULL
DUOX2	50506	genome.wustl.edu	37	15	45386853	45386853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014080.4	-1	reviewed	p.R1478W	1.000	183	0%	158	27.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
ENSG00000245635	0	genome.wustl.edu	37	15	52497390	52497390	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499615	+1	known	NULL	0.000	18	0%	18	33.3%	1	100%	-	-	-	-
MYO5A	4644	genome.wustl.edu	37	15	52641025	52641025	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	e29-2	1.000	202	0%	254	31.5%	0	-	-	-	-	-
CCPG1	9236	genome.wustl.edu	37	15	55651714	55651714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.H753Y	0.126	169	0%	162	29.6%	20	40%	benign(0)	tolerated(1)	-	NULL
NEDD4	4734	genome.wustl.edu	37	15	56152628	56152628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198400.2	-1	validated	p.V660M	0.088	262	0.4%	293	35.2%	2	0%	benign(0.051)	tolerated(0.1)	neutral(0.289)	NULL
RFX7	64864	genome.wustl.edu	37	15	56386858	56386858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.P1023L	1.000	253	0%	270	34.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LCTL	197021	genome.wustl.edu	37	15	66857133	66857133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207338.2	-1	validated	p.A55T	1.000	70	0%	69	36.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2
PARP6	56965	genome.wustl.edu	37	15	72552964	72552964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020214.2	-1	provisional	p.R204L	1.000	141	0%	151	31.8%	19	15.7%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
C15orf60	283677	genome.wustl.edu	37	15	73843303	73843303	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042367.1	+1	predicted	p.Q120E	0.982	165	0.6%	139	27.3%	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
ISLR2	57611	genome.wustl.edu	37	15	74425259	74425259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130136.1	+1	validated	p.T55M	1.000	20	0%	28	21.4%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_LRRNT,superfamily_SSF52058
SCAMP5	192683	genome.wustl.edu	37	15	75308960	75308960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138967.3	+1	validated	p.L55M	1.000	260	0%	271	32.1%	0	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_SCAMP
SIN3A	25942	genome.wustl.edu	37	15	75692388	75692388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.R616H	1.000	325	0.3%	345	28.7%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HDAC_interact,HMMSmart_HDAC_interact
LINGO1	84894	genome.wustl.edu	37	15	77907251	77907251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032808.5	-1	validated	p.G333D	1.000	109	0%	113	24.8%	11	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00369,superfamily_L domain-like
CPEB1	64506	genome.wustl.edu	37	15	83222665	83222665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030594.3	-1	reviewed	p.K312N	1.000	244	0.4%	288	33%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TM6SF1	53346	genome.wustl.edu	37	15	83795547	83795547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023003.3	+1	validated	p.T250M	0.000	516	0%	477	30.2%	5	0%	benign(0.396)	tolerated(0.08)	neutral(0.427)	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84245410	84245410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003027.3	+1	validated	p.E181K	0.997	168	0%	187	33.2%	1	100%	possibly_damaging(0.574)	deleterious(0.03)	deleterious(0.561)	HMMPfam_BAR,HMMSmart_SM00721
ZNF592	9640	genome.wustl.edu	37	15	85341259	85341259	+	Silent	SNP	G	G	A	rs181448204	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014630.2	+1	validated	p.Q853	1.000	81	0%	53	32.1%	20	25%	-	-	-	NULL
KIF7	374654	genome.wustl.edu	37	15	90193029	90193029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198525.2	-1	validated	p.E158K	1.000	130	0%	115	35.7%	2	0%	benign(0.147)	deleterious(0.01)	neutral(0.419)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
ANPEP	290	genome.wustl.edu	37	15	90333747	90333749	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001150.2	-1	reviewed	p.F898in_frame_del	0.996:0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
GABARAPL3	23766	genome.wustl.edu	37	15	90892293	90892293	+	Missense_Mutation	SNP	C	C	A	rs2589973	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412799	-1	known	p.R46M	1.000	250	0.4%	281	26%	0	-	benign(0.056)	deleterious(0)	neutral(0.448)	HMMPfam_MAP1_LC3,superfamily_SSF54236
NR2F2	7026	genome.wustl.edu	37	15	96880723	96880723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021005.3	+1	reviewed	p.V373I	1.000	235	0%	226	38.5%	62	11.2%	possibly_damaging(0.94)	tolerated(0.35)	neutral(0.406)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
METRN	79006	genome.wustl.edu	37	16	767306	767306	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024042.2	+1	validated	p.A267	0.498	18	0.000	9	0.556	114	52.6%	-	-	-	NULL
BAIAP3	8938	genome.wustl.edu	37	16	1394143	1394143	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003933.3	+1	reviewed	p.L538	1.000	27	0%	32	43.8%	10	60%	-	-	-	NULL
IFT140	9742	genome.wustl.edu	37	16	1573871	1573873	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.E1076in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_TPR-like
MSRB1	51734	genome.wustl.edu	37	16	1991321	1991321	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399753	-1	known	p.T47	0.016	83	0%	52	25%	52	38.4%	-	-	-	HMMPfam_SelR,superfamily_Mss4_like
LOC100287346	100287346	genome.wustl.edu	37	16	2818134	2818134	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343445.1	-1	model	p.D152E	0.587	175	0%	188	35.6%	196	42.3%	-	-	-	NULL
GLYR1	84656	genome.wustl.edu	37	16	4855292	4855292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032569.3	-1	validated	p.A536V	1.000	178	0%	213	31.9%	20	40%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
RBFOX1	54715	genome.wustl.edu	37	16	7647414	7647414	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145891.2	+1	reviewed	p.T221	0.002	342	0%	422	34.1%	0	-	-	-	-	NULL
PMM2	5373	genome.wustl.edu	37	16	8898674	8898674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000303.2	+1	reviewed	p.K77E	1.000	522	0%	520	31.5%	42	50%	benign(0.009)	tolerated(0.13)	neutral(0.253)	HMMPfam_PMM,superfamily_HAD-like
ENSG00000234719	0	genome.wustl.edu	37	16	12021361	12021361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399147	-1	known	p.R338W	0.021	28	0%	51	33.3%	1	0%	benign(0.05)	deleterious(0)	neutral(0.448)	NULL
MYH11	4629	genome.wustl.edu	37	16	15851685	15851685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.P532L	1.000	201	0%	188	23.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
GPR139	124274	genome.wustl.edu	37	16	20043478	20043478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002911.2	-1	validated	p.S214N	1.000	119	0%	180	30.6%	0	-	benign(0.143)	tolerated(0.36)	neutral(0.033)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GP2	2813	genome.wustl.edu	37	16	20331017	20331017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007240.1	-1	validated	p.L314P	0.044	865	0%	916	33.5%	21	4.7%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
UMOD	7369	genome.wustl.edu	37	16	20357476	20357476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008389.1	-1	reviewed	p.R385Q	0.196	51	0%	53	30.2%	0	-	benign(0.006)	tolerated(0.58)	neutral(0.005)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ACSM2B	348158	genome.wustl.edu	37	16	20552076	20552076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105069.1	-1	validated	p.I510T	0.998	422	0%	396	30.6%	0	-	benign(0.064)	deleterious(0)	neutral(0.449)	superfamily_Acetyl-CoA synthetase-like
ENSG00000217794	0	genome.wustl.edu	37	16	21548155	21548155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000403120	-1	known	p.R99H	0.009	59	0%	67	13.4%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
NDUFAB1	4706	genome.wustl.edu	37	16	23598622	23598622	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005003.2	-1	validated	p.Q63*	0.018	166	0%	179	31.3%	98	6.1%	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24805947	24805947	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450465	+1	known	p.G85*	1.000	358	0%	340	27.6%	6	66.6%	benign(0.005)	tolerated(0.48)	neutral(0.011)	NULL
XPO6	23214	genome.wustl.edu	37	16	28123221	28123221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015171.2	-1	provisional	p.S753N	1.000	216	0%	220	33.2%	42	42.8%	benign(0.001)	tolerated(0.33)	neutral(0.024)	superfamily_ARM repeat
SH2B1	25970	genome.wustl.edu	37	16	28883134	28883134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015503.2	+1	reviewed	p.A448V	1.000	98	0%	73	28.8%	36	22.2%	benign(0.094)	tolerated(0.22)	neutral(0.049)	NULL
ATP2A1	487	genome.wustl.edu	37	16	28912072	28912072	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173201.2	+1	reviewed	p.N645	0.029	53	0%	61	39.3%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
FBRS	64319	genome.wustl.edu	37	16	30680709	30680709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105079.1	+1	validated	p.R376C	0.970	16	0%	10	50%	27	51.8%	unknown(0)	deleterious(0)	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30748644	30748644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.R2428H	0.899	147	0%	192	33.9%	24	16.6%	unknown(0)	-	-	NULL
BCL7C	9274	genome.wustl.edu	37	16	30904232	30904232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004765.2	-1	reviewed	p.R70H	1.000	51	0%	54	38.9%	34	38.2%	possibly_damaging(0.853)	tolerated(0.08)	deleterious(0.629)	NULL
ZNF646	9726	genome.wustl.edu	37	16	31087690	31087690	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014699.3	+1	validated	p.R15	1.000	76	0%	89	28.1%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BCKDK	10295	genome.wustl.edu	37	16	31122466	31122466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441132	+1	known	p.M251T	0.701	141	0.7%	151	30.5%	101	35.6%	-	-	-	NULL
FUS	2521	genome.wustl.edu	37	16	31195692	31195692	+	Silent	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004960.3	+1	reviewed	p.G166	0.062	123	0%	163	33.7%	164	42.6%	-	-	-	NULL
ZNF843	283933	genome.wustl.edu	37	16	31447410	31447410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136509.1	-1	provisional	p.P254L	0.000	58	0%	60	33.3%	0	-	unknown(0)	-	-	NULL
PHKB	5257	genome.wustl.edu	37	16	47628127	47628127	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	e12+2	0.997	331	0%	274	31.4%	0	-	-	-	-	-
PHKB	5257	genome.wustl.edu	37	16	47703238	47703238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	p.A847V	1.000	164	0%	147	31.3%	47	48.9%	probably_damaging(0.989)	tolerated(0.69)	neutral(0.442)	HMMPfam_PHK_AB
HERPUD1	9709	genome.wustl.edu	37	16	56973820	56973820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014685.2	+1	reviewed	p.A190S	1.000	140	0%	170	31.2%	271	34.3%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
ZNF319	57567	genome.wustl.edu	37	16	58031418	58031418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020807.1	-1	provisional	p.T251M	1.000	86	0%	87	33.3%	9	44.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDH8	1006	genome.wustl.edu	37	16	61689584	61689584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001796.2	-1	reviewed	p.R566C	1.000	393	0.5%	357	29.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	61859045	61859045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001796.2	-1	reviewed	p.A236T	1.000	329	0%	241	25.3%	0	-	possibly_damaging(0.515)	tolerated(0.65)	neutral(0.176)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CES2	8824	genome.wustl.edu	37	16	66976021	66976021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003869.4	+1	reviewed	p.T448I	0.015	253	0.4%	246	26.8%	25	48%	benign(0.42)	deleterious(0.05)	deleterious(0.481)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
RANBP10	57610	genome.wustl.edu	37	16	67761726	67761726	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020850.1	-1	provisional	p.R516	0.005	71	0%	73	35.6%	19	42.1%	-	-	-	HMMSmart_CRA,HMMPfam_RanBPM_CRA
NUTF2	10204	genome.wustl.edu	37	16	67902440	67902440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005796.1	+1	reviewed	p.A70T	1.000	208	1%	228	23.7%	427	22.2%	benign(0.005)	tolerated(1)	-	HMMPfam_NTF2,superfamily_NTF2-like
ESRP2	80004	genome.wustl.edu	37	16	68265718	68265718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024939.2	-1	validated	p.A429V	1.000	56	0%	56	19.6%	45	55.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TMCO7	79613	genome.wustl.edu	37	16	69007972	69007972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024562.1	+1	validated	p.P915S	0.637	274	0%	288	29.9%	9	33.3%	benign(0.196)	tolerated(0.65)	neutral(0.021)	superfamily_ARM repeat
MARVELD3	91862	genome.wustl.edu	37	16	71660407	71660408	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017967.2	+1	validated	p.H94fs	0.641:0.451	-	-	-	-	-	-	-	-	-	NULL
AP1G1	164	genome.wustl.edu	37	16	71823341	71823341	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030007.1	-1	reviewed	p.I14	1.000	172	0%	190	30.5%	9	55.5%	-	-	-	superfamily_ARM repeat
ADAD2	161931	genome.wustl.edu	37	16	84228742	84228742	+	Silent	SNP	C	C	T	rs148697513	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139174.3	+1	validated	p.D297	0.000	40	0%	24	37.5%	1	0%	-	-	-	NULL
KIAA0513	9764	genome.wustl.edu	37	16	85120281	85120281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014732.2	+1	validated	p.R348C	1.000	79	0%	60	20%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
JPH3	57338	genome.wustl.edu	37	16	87678246	87678246	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020655.2	+1	reviewed	p.S255	1.000	49	0%	39	20.5%	0	-	-	-	-	NULL
GAS8	2622	genome.wustl.edu	37	16	90106746	90106746	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001481.2	+1	reviewed	p.T350	0.000	57	0%	93	30.1%	21	52.3%	-	-	-	NULL
ABR	29	genome.wustl.edu	37	17	915128	915128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021962.2	-1	reviewed	p.V687M	1.000	241	0%	280	36.4%	24	33.3%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
YWHAE	7531	genome.wustl.edu	37	17	1248584	1248587	+	RNA	DEL	AAAA	AAAA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAAA	AAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024058.1	-1	reviewed	NULL	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
WDR81	124997	genome.wustl.edu	37	17	1631227	1631227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409644	+1	known	p.M992V	1.000	22	0%	26	46.2%	8	25%	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_WD40 repeat-like
TSR1	55720	genome.wustl.edu	37	17	2239358	2239358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018128.4	-1	validated	p.S58R	1.000	316	0%	314	30.9%	19	26.3%	benign(0.344)	tolerated(0.39)	neutral(0.124)	NULL
LOC100288674	100288674	genome.wustl.edu	37	17	2599489	2599489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343499.1	+1	model	p.R56C	0.000	53	0%	38	28.9%	36	47.2%	-	-	-	NULL
OR1D2	4991	genome.wustl.edu	37	17	2996245	2996245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002548.2	-1	validated	p.G16W	0.215	58	0%	102	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
CYB5D2	124936	genome.wustl.edu	37	17	4046824	4046828	+	RNA	DEL	AAAAA	AAAAA	-	rs71383524	byCluster	TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAAAA	AAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_023346.1	+1	validated	NULL	0.028:0.028:0.027:0.025:0.023	-	-	-	-	-	-	-	-	-	-
ALOX15	246	genome.wustl.edu	37	17	4539265	4539265	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001140.3	-1	validated	e8-2	0.364	124	0%	216	16.7%	0	-	-	-	-	-
GLTPD2	388323	genome.wustl.edu	37	17	4692526	4692526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014985.1	+1	provisional	p.R38C	0.001	35	0%	33	30.3%	1	100%	benign(0.377)	deleterious(0.02)	deleterious(0.504)	NULL
MINK1	50488	genome.wustl.edu	37	17	4799345	4799345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153827.4	+1	reviewed	p.V1138M	0.999	141	0%	156	32.7%	46	43.4%	benign(0.201)	deleterious(0)	neutral(0.464)	HMMPfam_CNH,HMMSmart_SM00036
CAMTA2	23125	genome.wustl.edu	37	17	4881814	4881814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015099.3	-1	validated	p.R584C	1.000	114	0%	141	27.7%	19	52.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TIG,superfamily_E set domains
SCIMP	388325	genome.wustl.edu	37	17	5138049	5138049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207103.2	-1	provisional	p.M1T	0.235	121	0%	159	27.7%	2	0%	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
TMEM95	339168	genome.wustl.edu	37	17	7258534	7258534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198154.1	+1	provisional	p.L4P	0.545	37	0%	12	33.3%	0	-	possibly_damaging(0.926)	-	-	NULL
CTC1	80169	genome.wustl.edu	37	17	8146423	8146423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025099.5	-1	validated	p.T26N	1.000	80	1.3%	90	38.9%	2	100%	benign(0.185)	tolerated(0.49)	neutral(0.028)	NULL
USP43	124739	genome.wustl.edu	37	17	9596508	9596508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153210.3	+1	validated	p.P473L	0.996	266	0%	259	34%	7	71.4%	possibly_damaging(0.594)	deleterious(0.02)	deleterious(0.588)	HMMPfam_UCH,superfamily_SSF54001
MYOCD	93649	genome.wustl.edu	37	17	12666422	12666422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153604.2	+1	reviewed	p.C760R	0.992	100	0%	108	28.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
TRPV2	51393	genome.wustl.edu	37	17	16329435	16329435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016113.3	+1	reviewed	p.R316Q	1.000	163	0%	217	28.6%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TRPV2	51393	genome.wustl.edu	37	17	16335107	16335107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016113.3	+1	reviewed	p.R533W	0.998	213	0%	160	36.9%	14	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ion_trans
TOM1L2	146691	genome.wustl.edu	37	17	17772710	17772710	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082968.1	-1	validated	p.T285	0.005	138	0%	104	26.9%	8	50%	-	-	-	HMMPfam_GAT,superfamily_GAT-like domain
LRRC48	83450	genome.wustl.edu	37	17	17900914	17900914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130090.1	+1	validated	p.R322H	0.000	120	0%	142	32.4%	4	50%	benign(0.004)	tolerated(0.12)	neutral(0.261)	NULL
FLII	2314	genome.wustl.edu	37	17	18150119	18150119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002018.2	-1	reviewed	p.E947A	1.000	252	0%	283	29.7%	96	35.4%	benign(0.009)	tolerated(0.4)	neutral(0.017)	HMMSmart_GEL,superfamily_SSF55753
SLC47A2	146802	genome.wustl.edu	37	17	19584860	19584863	+	Frame_Shift_Del	DEL	TCAT	TCAT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TCAT	TCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152908.3	-1	validated	p.M465fs	0.951:0.968:0.990:0.980	-	-	-	-	-	-	-	-	-	NULL
DHRS7B	25979	genome.wustl.edu	37	17	21094373	21094373	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015510.3	+1	validated	p.S295	0.000	446	0%	437	29.5%	85	56.4%	-	-	-	superfamily_NAD(P)-bd
PIPOX	51268	genome.wustl.edu	37	17	27380454	27380454	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016518.2	+1	validated	p.G167	0.145	240	0%	272	31.6%	0	-	-	-	-	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
TAOK1	57551	genome.wustl.edu	37	17	27816724	27816724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020791.1	+1	validated	p.A233V	1.000	436	0%	388	19.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GIT1	28964	genome.wustl.edu	37	17	27901856	27901856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085454.1	-1	validated	p.R726Q	1.000	52	0%	63	28.6%	37	35.1%	benign(0.02)	tolerated(0.25)	neutral(0.038)	NULL
C17orf102	400591	genome.wustl.edu	37	17	32905987	32905987	+	Missense_Mutation	SNP	G	G	A	rs146470032	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207454.2	-1	validated	p.R105C	0.000	53	0%	38	31.6%	0	-	unknown(0)	-	-	NULL
SLFN11	91607	genome.wustl.edu	37	17	33680356	33680356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.S641G	0.241	255	0%	255	28.6%	20	0%	possibly_damaging(0.451)	tolerated(0.13)	neutral(0.400)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HNF1B	6928	genome.wustl.edu	37	17	36061117	36061117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000458.2	-1	reviewed	p.L469M	1.000	94	0%	85	31.8%	16	6.2%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_HNF-1B_C
MLLT6	4302	genome.wustl.edu	37	17	36865494	36865494	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005937.3	+1	validated	p.N141	1.000	101	0%	75	37.3%	12	16.6%	-	-	-	HMMSmart_PHD
FBXO47	494188	genome.wustl.edu	37	17	37094840	37094840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008777.2	-1	validated	p.Q410R	0.987	196	0%	215	26%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CACNB1	782	genome.wustl.edu	37	17	37340111	37340111	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000723.3	-1	reviewed	p.V302E	1.000	145	0.7%	104	34.6%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
STARD3	10948	genome.wustl.edu	37	17	37815730	37815730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006804.3	+1	reviewed	p.R240H	0.229	106	0%	121	35.5%	30	36.6%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
TNS4	84951	genome.wustl.edu	37	17	38645086	38645086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032865.5	-1	validated	p.R192Q	0.997	34	0%	25	28%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
KRT31	3881	genome.wustl.edu	37	17	39551123	39551123	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002277.2	-1	reviewed	p.S358	0.005	235	0.4%	202	30.2%	0	-	-	-	-	HMMPfam_Filament,PatternScan_IF
CNP	1267	genome.wustl.edu	37	17	40120129	40120131	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033133.4	+1	validated	p.F18in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
STAT5A	6776	genome.wustl.edu	37	17	40456593	40456593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003152.3	+1	reviewed	p.V435M	1.000	353	0%	299	32.4%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind
HSD17B1	3292	genome.wustl.edu	37	17	40705828	40705828	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000413.2	+1	validated	p.D154	0.196	97	0%	102	35.3%	11	27.2%	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
EZH1	2145	genome.wustl.edu	37	17	40876419	40876419	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001991.3	-1	validated	p.P90	0.107	338	0%	399	28.6%	3	33.3%	-	-	-	NULL
ENSG00000251119	0	genome.wustl.edu	37	17	42266286	42266288	+	RNA	DEL	TTT	TTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509949	-1	novel	NULL	0.519:0.581:0.663	-	-	-	-	-	-	-	-	-	-
FZD2	2535	genome.wustl.edu	37	17	42636580	42636580	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.A508	1.000	38	0%	40	30%	74	41.8%	-	-	-	HMMPfam_Frizzled
DBF4B	80174	genome.wustl.edu	37	17	42808369	42808369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145663.1	+1	validated	p.A152T	1.000	175	0%	194	33%	5	60%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
B4GALNT2	124872	genome.wustl.edu	37	17	47230249	47230249	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153446.2	+1	validated	p.L207	1.000	62	0%	74	35.1%	0	-	-	-	-	NULL
ABCC3	8714	genome.wustl.edu	37	17	48745239	48745239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003786.3	+1	reviewed	p.L551I	1.000	321	0%	336	32.7%	39	30.7%	possibly_damaging(0.577)	deleterious(0)	deleterious(0.643)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
MPO	4353	genome.wustl.edu	37	17	56356382	56356382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000250.1	-1	reviewed	p.C291Y	1.000	76	0%	51	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
BZRAP1	9256	genome.wustl.edu	37	17	56387404	56387406	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.E1274in_frame_del	0.552:0.737:0.734	-	-	-	-	-	-	-	-	-	NULL
MTMR4	9110	genome.wustl.edu	37	17	56572393	56572393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004687.4	-1	validated	p.E1037A	1.000	298	0.3%	330	31.2%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPM1E	22843	genome.wustl.edu	37	17	57058137	57058137	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014906.3	+1	reviewed	p.R671	0.333	154	0.6%	176	34.1%	0	-	-	-	-	NULL
DHX40	79665	genome.wustl.edu	37	17	57679953	57679953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024612.4	+1	reviewed	p.G626D	1.000	353	0%	338	28.1%	35	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1605
HEATR6	63897	genome.wustl.edu	37	17	58128256	58128256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.S791I	1.000	161	0%	147	28.6%	7	42.8%	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	superfamily_ARM-type_fold
PPM1D	8493	genome.wustl.edu	37	17	58700948	58700948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003620.2	+1	reviewed	p.I180T	1.000	164	0%	266	34.6%	11	45.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
EFCAB3	146779	genome.wustl.edu	37	17	60484498	60484498	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144933.1	+1	validated	p.L316	1.000	305	0%	387	30.2%	0	-	-	-	-	NULL
C17orf72	92340	genome.wustl.edu	37	17	62076363	62076363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425164	+1	known	p.M58V	0.995	19	0%	21	33.3%	3	100%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
LRRC37A3	374819	genome.wustl.edu	37	17	62865277	62865277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199340.2	-1	provisional	p.N972D	0.545	105	0%	57	29.8%	1	0%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	superfamily_SSF52058
AMZ2	51321	genome.wustl.edu	37	17	66247314	66247314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033569.1	+1	validated	p.T194I	0.867	584	0%	642	31%	61	44.2%	benign(0.054)	tolerated(0.18)	neutral(0.060)	"HMMPfam_Peptidase_M54,superfamily_Metalloproteases (""zincins"") catalytic domain"
KCNJ16	3773	genome.wustl.edu	37	17	68128439	68128439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018658.1	+1	reviewed	p.R71C	0.907	760	0%	816	26.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IRK,superfamily_SSF81324
GRB2	2885	genome.wustl.edu	37	17	73317858	73317858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002086.4	-1	reviewed	p.K117R	1.000	188	0%	239	28.9%	77	27.2%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ITGB4	3691	genome.wustl.edu	37	17	73739940	73739940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000213.3	+1	reviewed	p.R1037W	0.957	30	0%	22	36.4%	23	34.7%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Calx-beta,HMMSmart_SM00237
TNRC6C	57690	genome.wustl.edu	37	17	76093836	76093836	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142640.1	+1	validated	p.P1436	0.964	68	0%	69	27.5%	4	25%	-	-	-	NULL
PGS1	9489	genome.wustl.edu	37	17	76395548	76395548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024419.3	+1	provisional	p.R211C	1.000	111	0%	113	25.7%	25	32%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Phospholipase D/nuclease
CBX8	57332	genome.wustl.edu	37	17	77769084	77769084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020649.2	-1	validated	p.R174C	0.196	122	0%	94	24.5%	14	35.7%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
CBX4	8535	genome.wustl.edu	37	17	77808934	77808934	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003655.2	-1	validated	p.Y169	0.998	252	0%	205	27.3%	17	35.2%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78318818	78318818	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.D2228V	1.000	335	0%	303	30.4%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RNF213	57674	genome.wustl.edu	37	17	78320524	78320524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.R2797C	0.942	38	0%	37	40.5%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
TBCD	6904	genome.wustl.edu	37	17	80888412	80888412	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005993.4	+1	reviewed	p.T1002	0.001	128	0%	151	33.8%	148	56%	-	-	-	superfamily_ARM repeat
SMCHD1	23347	genome.wustl.edu	37	18	2694685	2694688	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AGTT	AGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.L346fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
L3MBTL4	91133	genome.wustl.edu	37	18	6239790	6239790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173464.3	-1	validated	p.A212T	1.000	323	0%	371	26.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MBT,HMMSmart_MBT,superfamily_SSF63748
LAMA1	284217	genome.wustl.edu	37	18	7034621	7034621	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.N636	0.000	326	0.3%	327	30.3%	0	-	-	-	-	HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281
PTPRM	5797	genome.wustl.edu	37	18	7955150	7955150	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.L290	0.003	139	0.7%	140	29.3%	11	27.2%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GNAL	2774	genome.wustl.edu	37	18	11880998	11880998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182978.2	+1	validated	p.T414fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_G-alpha,superfamily_SSF52540
AFG3L2	10939	genome.wustl.edu	37	18	12340264	12340266	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006796.1	-1	reviewed	p.F639in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_M41,superfamily_SSF52540
SEH1L	81929	genome.wustl.edu	37	18	12986926	12986927	+	In_Frame_Ins	INS	-	-	TCC	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013437.1	+1	reviewed	p.383in_frame_insP	1.000:0.997	-	-	-	-	-	-	-	-	-	NULL
OSBPL1A	114876	genome.wustl.edu	37	18	21761186	21761186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080597.2	-1	reviewed	p.R579C	1.000	358	0%	365	31.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
CELF4	56853	genome.wustl.edu	37	18	34833870	34833870	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020180.3	-1	reviewed	p.A455	0.997	93	1.1%	72	33.3%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NEDD4L	23327	genome.wustl.edu	37	18	55833068	55833068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144967.1	+1	validated	p.A33T	1.000	761	0%	613	19.6%	9	44.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CDH19	28513	genome.wustl.edu	37	18	64176400	64176400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.D554Y	1.000	476	0%	386	32.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TSHZ1	10194	genome.wustl.edu	37	18	72998160	72998160	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005786.4	+1	reviewed	p.N221	1.000	50	0%	64	20.3%	9	44.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ATP9B	374868	genome.wustl.edu	37	18	77134011	77134011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198531.3	+1	validated	p.V1062I	0.138	218	0%	210	24.8%	31	38.7%	benign(0)	tolerated(1)	-	NULL
KLK10	5655	genome.wustl.edu	37	19	687023	687023	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_214710.3	-1	validated	p.L183	0.994	33	0%	35	34.3%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C19orf21	126353	genome.wustl.edu	37	19	757829	757829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173481.2	+1	predicted	p.R295W	0.998	32	0%	22	45.5%	47	38.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C19orf6	91304	genome.wustl.edu	37	19	1011424	1011424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033026.1	-1	validated	p.A387T	1.000	17	0%	19	42.1%	185	57.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Membralin
ABCA7	10347	genome.wustl.edu	37	19	1046941	1046941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.R588H	0.001	17	0%	13	30.8%	5	60%	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	NULL
GAMT	2593	genome.wustl.edu	37	19	1399821	1399821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138924.1	-1	reviewed	p.R100W	0.998	51	0%	25	32%	35	37.1%	possibly_damaging(0.82)	deleterious(0)	deleterious(0.755)	superfamily_SSF53335
GAMT	2593	genome.wustl.edu	37	19	1399836	1399836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138924.1	-1	reviewed	p.V95I	1.000	52	0%	24	33.3%	27	51.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF53335
KLF16	83855	genome.wustl.edu	37	19	1854601	1854601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031918.3	-1	validated	p.A206T	1.000	25	0%	28	39.3%	6	50%	possibly_damaging(0.951)	deleterious(0.05)	deleterious(0.740)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000005206	0	genome.wustl.edu	37	19	2339981	2339981	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432705	+1	known	p.G252	0.000	120	0%	105	19%	0	-	-	-	-	NULL
KDM4B	23030	genome.wustl.edu	37	19	5143983	5143983	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015015.2	+1	validated	p.C852	0.995	36	0%	42	35.7%	32	34.3%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
PTPRS	5802	genome.wustl.edu	37	19	5231552	5231552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.P642S	1.000	17	0%	22	40.9%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KHSRP	8570	genome.wustl.edu	37	19	6417087	6417087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003685.2	-1	validated	p.G365W	1.000	82	0%	80	27.5%	138	36.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TNFSF9	8744	genome.wustl.edu	37	19	6534701	6534701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003811.3	+1	reviewed	p.T130M	0.000	104	0%	115	34.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_TNF,HMMSmart_TNF,superfamily_TNF_like
SH2D3A	10045	genome.wustl.edu	37	19	6760850	6760850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005490.2	-1	validated	p.R73Q	1.000	78	0%	90	34.4%	11	45.4%	probably_damaging(0.99)	tolerated(0.24)	deleterious(0.479)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
STXBP2	6813	genome.wustl.edu	37	19	7703933	7703933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006949.2	+1	reviewed	p.R39H	1.000	132	0%	123	31.7%	75	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
MUC16	94025	genome.wustl.edu	37	19	9047420	9047420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.V11404A	0.000	728	0%	737	34.9%	0	-	benign(0.099)	-	-	NULL
SLC44A2	57153	genome.wustl.edu	37	19	10753093	10753093	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020428.3	+1	validated	p.Y660	0.647	288	0%	292	29.5%	214	41.5%	-	-	-	HMMPfam_DUF580
SMARCA4	6597	genome.wustl.edu	37	19	11135038	11135038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128849.1	+1	reviewed	p.A1002V	0.982	31	0%	33	30.3%	88	42%	possibly_damaging(0.671)	deleterious(0.01)	deleterious(0.643)	HMMPfam_SNF2_N
DOCK6	57572	genome.wustl.edu	37	19	11348738	11348738	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.P605	0.022	204	0%	239	33.9%	1	100%	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11363474	11363474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.G98V	0.900	38	0%	32	25%	4	50%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
ZNF763	284390	genome.wustl.edu	37	19	12089860	12089860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012753.1	+1	validated	p.G377V	0.670	304	0%	269	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CC2D1A	54862	genome.wustl.edu	37	19	14034221	14034221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017721.4	+1	reviewed	p.A573T	0.001	93	0%	104	35.6%	52	42.3%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
SLC1A6	6511	genome.wustl.edu	37	19	15083543	15083543	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005071.1	-1	provisional	p.L60	1.000	20	0%	19	31.6%	0	-	unknown(0)	-	-	HMMPfam_SDF
BRD4	23476	genome.wustl.edu	37	19	15367855	15367855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058243.2	-1	reviewed	p.D491N	1.000	27	0%	32	18.8%	31	41.9%	probably_damaging(0.969)	tolerated(0.19)	neutral(0.461)	NULL
OR10H2	26538	genome.wustl.edu	37	19	15839202	15839202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013939.2	+1	validated	p.V117I	0.868	306	0.3%	323	26%	0	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_7tm_1,superfamily_SSF81321
OR10H1	26539	genome.wustl.edu	37	19	15918478	15918478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013940.2	-1	validated	p.V124M	0.368	274	0%	223	25.6%	0	-	possibly_damaging(0.88)	deleterious(0.01)	deleterious(0.749)	HMMPfam_7tm_1,superfamily_SSF81321
C19orf44	84167	genome.wustl.edu	37	19	16620726	16620726	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032207.2	+1	validated	p.H522	0.000	91	0%	106	34%	3	33.3%	-	-	-	NULL
CHERP	10523	genome.wustl.edu	37	19	16639060	16639060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006387.5	-1	validated	p.S379N	0.973	41	0%	43	39.5%	33	51.5%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
MED26	9441	genome.wustl.edu	37	19	16687028	16687028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004831.3	-1	validated	p.T538M	0.000	60	0%	44	36.4%	13	46.1%	benign(0.187)	tolerated(0.1)	neutral(0.304)	NULL
NWD1	284434	genome.wustl.edu	37	19	16860538	16860538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.L227R	0.870	15	0%	23	34.8%	0	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	superfamily_P-loop containing nucleoside triphosphate hydrolases
NWD1	284434	genome.wustl.edu	37	19	16875956	16875956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.R653H	0.272	179	0%	167	31.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
GLT25D1	79709	genome.wustl.edu	37	19	17671228	17671228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024656.2	+1	provisional	p.Q148R	1.000	122	0%	132	25%	38	34.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF53448
PIK3R2	5296	genome.wustl.edu	37	19	18273102	18273102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005027.2	+1	validated	p.Y331C	1.000	32	0%	45	26.7%	42	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
KIAA1683	80726	genome.wustl.edu	37	19	18376171	18376171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145304.1	-1	validated	p.V727M	0.000	116	0%	146	33.6%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
COMP	1311	genome.wustl.edu	37	19	18895155	18895155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000095.2	-1	reviewed	p.G645C	1.000	63	0%	41	22%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
HOMER3	9454	genome.wustl.edu	37	19	19049966	19049966	+	RNA	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027297.1	-1	reviewed	NULL	0.000	6	0.000	17	0.471	1	100%	-	-	-	-
TSSK6	83983	genome.wustl.edu	37	19	19626125	19626125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032037.2	-1	validated	p.V38M	0.988	79	0%	73	34.2%	1	100%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ATP13A1	57130	genome.wustl.edu	37	19	19765378	19765378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020410.2	-1	validated	p.T596M	0.998	67	0%	50	32%	72	44.4%	benign(0.07)	tolerated(0.06)	neutral(0.328)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ZNF85	7639	genome.wustl.edu	37	19	21132152	21132153	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003429.3	+1	validated	p.I278fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF429	353088	genome.wustl.edu	37	19	21719302	21719302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001415.2	+1	provisional	p.I149M	0.016	244	0.4%	269	32.3%	1	0%	benign(0.142)	tolerated(0.08)	neutral(0.312)	superfamily_SSF57667
ZNF724P	440519	genome.wustl.edu	37	19	23406617	23406617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418100	-1	known	p.I144V	0.000	245	0%	232	30.6%	2	100%	benign(0.017)	tolerated(0.4)	neutral(0.017)	superfamily_C2H2 and C2HC zinc fingers
CCNE1	898	genome.wustl.edu	37	19	30308054	30308054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001238.1	+1	reviewed	p.N64I	0.000	147	0%	190	24.2%	54	53.7%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
DPY19L3	147991	genome.wustl.edu	37	19	32955657	32955657	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207325.2	+1	validated	p.V527	0.982	461	0%	513	27.9%	4	25%	-	-	-	HMMPfam_DUF2211
ANKRD27	84079	genome.wustl.edu	37	19	33090638	33090638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032139.2	-1	validated	p.P964H	0.987	328	0.3%	326	29.4%	12	16.6%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
SLC7A10	56301	genome.wustl.edu	37	19	33702398	33702398	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019849.2	-1	validated	p.F278	0.884	141	0%	151	29.8%	0	-	-	-	-	HMMPfam_AA_permease
RBM42	79171	genome.wustl.edu	37	19	36124672	36124672	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024321.3	+1	provisional	p.A256	0.159	60	3.3%	49	40.8%	42	33.3%	-	-	-	NULL
POLR2I	5438	genome.wustl.edu	37	19	36605708	36605708	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006233.4	-1	reviewed	p.C17	1.000	93	0%	112	11.6%	210	6.1%	-	-	-	HMMPfam_RNA_POL_M_15KD,HMMSmart_SM00661,PatternScan_RNA_POL_M_15KD,superfamily_Zinc beta-ribbon
ZNF571	51276	genome.wustl.edu	37	19	38056480	38056480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016536.3	-1	validated	p.C284R	0.995	200	0%	206	27.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR87	83889	genome.wustl.edu	37	19	38377669	38377669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.I2175M	0.000	579	0%	666	30.2%	0	-	possibly_damaging(0.681)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
RYR1	6261	genome.wustl.edu	37	19	38990276	38990276	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.G2343	0.419	14	0%	22	45.5%	0	-	-	-	-	HMMPfam_RYDR_ITPR
SARS2	54938	genome.wustl.edu	37	19	39412714	39412714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430193	-1	known	p.R133Q	0.000	156	0%	205	35.6%	3	66.6%	benign(0.098)	tolerated(0.56)	neutral(0.014)	NULL
ZFP36	7538	genome.wustl.edu	37	19	39898385	39898385	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003407.2	+1	provisional	p.S9	0.993	10	0%	13	38.5%	126	19%	-	-	-	NULL
ZFP36	7538	genome.wustl.edu	37	19	39898924	39898924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003407.2	+1	provisional	p.G189D	1.000	17	0%	17	35.3%	182	22.5%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
PRX	57716	genome.wustl.edu	37	19	40902279	40902279	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181882.2	-1	reviewed	p.P660	0.012	151	0%	175	27.4%	0	-	-	-	-	NULL
LTBP4	8425	genome.wustl.edu	37	19	41131831	41131831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308370	+1	known	p.R1367H	0.997	20	0%	17	23.5%	49	24.4%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_TB,superfamily_Fibril-assoc
LOC390937	390937	genome.wustl.edu	37	19	42414106	42414106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_372730.7	-1	model	p.V71I	1.000	110	0.9%	92	28.3%	0	-	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
MEGF8	1954	genome.wustl.edu	37	19	42862325	42862325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.E1614K	1.000	86	0%	75	38.7%	2	50%	probably_damaging(0.998)	tolerated(0.62)	deleterious(0.478)	superfamily_Gal_oxid_central
ZNF233	353355	genome.wustl.edu	37	19	44768528	44768528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181756.1	+1	provisional	p.Q5H	0.936	617	0%	663	32%	0	-	benign(0.076)	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZFP112	7771	genome.wustl.edu	37	19	44831956	44831956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083335.1	-1	validated	p.R791H	0.530	445	0.2%	490	29%	3	0%	possibly_damaging(0.691)	tolerated(0.14)	deleterious(0.497)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CEACAM19	56971	genome.wustl.edu	37	19	45176024	45176024	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020219.3	+1	validated	p.T71R	0.000	111	0%	107	29.9%	3	33.3%	possibly_damaging(0.733)	deleterious(0.02)	deleterious(0.651)	superfamily_Immunoglobulin
CEACAM16	388551	genome.wustl.edu	37	19	45202699	45202699	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039213.2	+1	validated	p.Y50	0.002	210	0%	181	26.5%	0	-	-	-	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46808599	46808599	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152795.2	+1	reviewed	p.D105	1.000	52	0%	59	28.8%	0	-	-	-	-	HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
ARHGAP35	2909	genome.wustl.edu	37	19	47425038	47425038	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.V1037fs	1.000	-	-	-	-	-	-	-	-	-	NULL
LOC100287311	100287311	genome.wustl.edu	37	19	47823349	47823349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343688.1	-1	model	p.A59T	0.000	91	0%	101	28.7%	6	0%	-	-	-	NULL
EHD2	30846	genome.wustl.edu	37	19	48244338	48244338	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014601.3	+1	reviewed	p.P427	0.746	66	0%	47	23.4%	20	0%	-	-	-	NULL
RPL18	6141	genome.wustl.edu	37	19	49120016	49120016	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000979.2	-1	reviewed	p.D88E	0.997	173	0%	189	42.3%	4760	45.1%	possibly_damaging(0.813)	deleterious(0)	deleterious(0.752)	HMMPfam_Ribosomal_L18e,superfamily_Ribosomal proteins L15p and L18e
PPP1R15A	23645	genome.wustl.edu	37	19	49376606	49376606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014330.3	+1	validated	p.L39P	0.898	63	0%	44	27.3%	41	39%	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
IRF3	3661	genome.wustl.edu	37	19	50165385	50165385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001571.4	-1	validated	p.L268M	0.254	39	0%	42	28.6%	36	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SMAD_FHA,HMMPfam_IRF-3
LOC100131293	100131293	genome.wustl.edu	37	19	50862246	50862246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001724548.2	+1	model	p.A152V	0.001	133	0%	209	30.6%	0	-	-	-	-	NULL
POLD1	5424	genome.wustl.edu	37	19	50910642	50910642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002691.2	+1	validated	p.T582M	1.000	39	0%	15	53.3%	38	34.2%	benign(0.359)	deleterious(0)	deleterious(0.558)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
ZNF610	162963	genome.wustl.edu	37	19	52869672	52869672	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.N347	0.000	210	0%	258	34.9%	6	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NLRP12	91662	genome.wustl.edu	37	19	54314332	54314332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.I194T	1.000	70	0%	59	32.2%	0	-	benign(0.089)	deleterious(0)	neutral(0.451)	NULL
TMC4	147798	genome.wustl.edu	37	19	54668307	54668307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145303.1	-1	validated	p.R331H	0.851	24	0%	38	26.3%	114	40.3%	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	NULL
LILRA5	353514	genome.wustl.edu	37	19	54818744	54818744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021250.2	-1	reviewed	p.Q285R	0.001	330	0.3%	281	31.3%	5	0%	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
TTYH1	57348	genome.wustl.edu	37	19	54933406	54933406	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005367.1	+1	reviewed	p.E154*	0.903	10	0%	10	50%	0	-	-	-	-	HMMPfam_Tweety
LILRA2	11027	genome.wustl.edu	37	19	55086213	55086213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130917.1	+1	validated	p.P123H	0.144	262	0%	285	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
KIR3DL1	3811	genome.wustl.edu	37	19	55329773	55329773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013289.2	+1	reviewed	p.G25D	0.000	132	0%	236	38.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Immunoglobulin
NCR1	9437	genome.wustl.edu	37	19	55417575	55417575	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004829.5	+1	validated	p.C10	0.100	110	0%	137	35%	0	-	-	-	-	NULL
PPP6R1	22870	genome.wustl.edu	37	19	55748112	55748112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	p.E629D	0.998	283	0%	257	31.5%	83	36.1%	benign(0.253)	tolerated(0.47)	neutral(0.037)	NULL
TMEM190	147744	genome.wustl.edu	37	19	55889354	55889354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139172.1	+1	provisional	p.R106H	0.926	26	0%	22	22.7%	1	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
SSC5D	284297	genome.wustl.edu	37	19	56011623	56011623	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144950.1	+1	provisional	p.L716	0.001	42	0%	49	28.6%	0	-	-	-	-	NULL
EPN1	29924	genome.wustl.edu	37	19	56206560	56206560	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130071.1	+1	validated	p.A609	0.003	61	0%	29	31%	168	49.4%	-	-	-	NULL
ZNF835	90485	genome.wustl.edu	37	19	57175130	57175130	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005850.1	-1	provisional	p.C501	0.991	70	0%	56	30.4%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RBCK1	10616	genome.wustl.edu	37	20	390588	390588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031229.2	+1	reviewed	p.K29R	0.038	36	0%	31	29%	55	25.4%	benign(0.059)	tolerated(0.32)	neutral(0.028)	NULL
NOP56	10528	genome.wustl.edu	37	20	2635156	2635156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006392.2	+1	reviewed	p.A102V	1.000	212	0%	222	31.5%	56	48.2%	benign(0.006)	tolerated(0.05)	neutral(0.345)	NULL
PLCB4	5332	genome.wustl.edu	37	20	9360700	9360700	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000933.3	+1	reviewed	e10-1	1.000	219	0%	186	28.5%	0	-	-	-	-	-
JAG1	182	genome.wustl.edu	37	20	10639128	10639128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.E228K	1.000	119	0%	117	29.1%	5	0%	benign(0.186)	tolerated(0.2)	neutral(0.067)	HMMPfam_DSL,HMMSmart_DSL
C20orf72	92667	genome.wustl.edu	37	20	17956382	17956382	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052865.2	+1	predicted	p.P189	0.010	352	0%	439	33.9%	8	25%	-	-	-	NULL
SLC24A3	57419	genome.wustl.edu	37	20	19701772	19701772	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020689.3	+1	validated	p.C641	1.000	259	0%	214	34.6%	1	0%	-	-	-	NULL
ENTPD6	955	genome.wustl.edu	37	20	25187945	25187945	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001247.2	+1	reviewed	p.D96	0.000	85	0%	52	36.5%	21	38%	-	-	-	HMMPfam_GDA1_CD39
ENSG00000202414	0	genome.wustl.edu	37	20	25195338	25195338	+	RNA	SNP	G	G	A	rs149597570	by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000365544	+1	novel	NULL	0.001	16	0%	29	48.3%	0	-	-	-	-	-
HM13	81502	genome.wustl.edu	37	20	30137093	30137093	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178581.1	+1	reviewed	p.G208	1.000	154	0%	184	39.7%	659	48.8%	-	-	-	HMMSmart_PSN,HMMPfam_Peptidase_A22B
ACSS2	55902	genome.wustl.edu	37	20	33509210	33509210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018677.3	+1	reviewed	p.R452Q	0.188	116	0%	95	37.9%	20	45%	benign(0.195)	tolerated(0.1)	neutral(0.305)	HMMPfam_AMP-binding,superfamily_SSF56801
MYH7B	57644	genome.wustl.edu	37	20	33574720	33574720	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020884.3	+1	reviewed	p.D354	1.000	199	0%	176	24.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
C20orf4	25980	genome.wustl.edu	37	20	34843530	34843530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015511.3	+1	predicted	p.V340M	0.994	141	0%	117	24.8%	48	39.5%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_AAR2
C20orf24	55969	genome.wustl.edu	37	20	35240737	35240737	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026562.1	+1	validated	NULL	0.743	53	0%	74	33.8%	114	38.5%	-	-	-	-
TGM2	7052	genome.wustl.edu	37	20	36766732	36766732	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004613.2	-1	reviewed	p.A466	0.000	152	0.7%	149	28.9%	74	1.3%	-	-	-	NULL
BPI	671	genome.wustl.edu	37	20	36948660	36948660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001725.2	+1	reviewed	p.L251Q	0.514	85	0%	59	27.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
DHX35	60625	genome.wustl.edu	37	20	37652345	37652345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021931.2	+1	reviewed	p.R536C	1.000	241	0%	252	30.2%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZHX3	23051	genome.wustl.edu	37	20	39831027	39831027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015035.3	-1	reviewed	p.P844T	0.136	259	0%	276	34.8%	11	36.3%	possibly_damaging(0.948)	tolerated(0.56)	neutral(0.398)	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47630457	47630457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.R1380Q	1.000	324	0.6%	325	27.7%	5	40%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_ARM-type_fold
TSHZ2	128553	genome.wustl.edu	37	20	51870087	51870087	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173485.4	+1	validated	p.E30	1.000	89	0%	99	24.2%	0	-	-	-	-	NULL
ZBP1	81030	genome.wustl.edu	37	20	56188298	56188298	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030776.2	-1	validated	p.W197*	0.001	485	0%	530	29.6%	8	0%	-	-	-	NULL
TH1L	51497	genome.wustl.edu	37	20	57564970	57564970	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198976.1	+1	reviewed	p.L248	1.000	29	0%	24	25%	74	50%	-	-	-	HMMPfam_TH1
EDN3	1908	genome.wustl.edu	37	20	57896077	57896077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000114.2	+1	reviewed	p.T124M	1.000	117	0%	100	29%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LAMA5	3911	genome.wustl.edu	37	20	60921799	60921799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.R377H	0.002	74	0%	75	30.7%	10	70%	benign(0.037)	deleterious(0.01)	neutral(0.408)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
PRIC285	85441	genome.wustl.edu	37	20	62193208	62193208	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.G2220A	1.000	9	0.000	12	0.333	14	7.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RTEL1	51750	genome.wustl.edu	37	20	62294235	62294235	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032957.3	+1	reviewed	p.N177	0.976	102	0%	84	26.2%	1	100%	-	-	-	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540
ZBTB46	140685	genome.wustl.edu	37	20	62421893	62421893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025224.2	-1	provisional	p.T73M	1.000	39	0%	34	32.4%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ZBTB46	140685	genome.wustl.edu	37	20	62422079	62422079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025224.2	-1	provisional	p.T11M	0.999	14	0%	17	35.3%	1	0%	possibly_damaging(0.891)	deleterious(0.01)	deleterious(0.756)	superfamily_BTB/POZ_fold
BACH1	571	genome.wustl.edu	37	21	30701923	30701925	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001186.2	+1	reviewed	p.R564in_frame_del	1.000:0.209:0.926	-	-	-	-	-	-	-	-	-	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1
GRIK1	2897	genome.wustl.edu	37	21	30949473	30949473	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000830.3	-1	reviewed	p.S647	0.454	133	0%	129	29.5%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
SYNJ1	8867	genome.wustl.edu	37	21	34067464	34067464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.L203P	1.000	251	0.4%	283	33.6%	0	-	possibly_damaging(0.814)	deleterious(0)	deleterious(0.752)	HMMPfam_Syja_N
SON	6651	genome.wustl.edu	37	21	34922665	34922665	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.S376	1.000	112	0%	77	36.4%	23	65.2%	-	-	-	NULL
ITSN1	6453	genome.wustl.edu	37	21	35122513	35122513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003024.2	+1	reviewed	p.P138S	1.000	209	0%	218	31.7%	2	50%	unknown(0)	deleterious(0.04)	-	superfamily_EF-hand
TTC3	7267	genome.wustl.edu	37	21	38538285	38538285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.V1257I	0.000	146	0%	125	35.2%	34	50%	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_Spectrin,superfamily_SSF48452
DSCR3	10311	genome.wustl.edu	37	21	38600600	38600600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000288304	-1	known	p.G152R	0.079	121	0%	120	27.5%	21	52.3%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41450819	41450819	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.G1502	0.985	68	0%	60	48.3%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
PDE9A	5152	genome.wustl.edu	37	21	44190901	44190901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002606.2	+1	reviewed	p.M560T	0.307	145	0%	186	25.8%	71	46.4%	benign(0)	tolerated(0.84)	neutral(0.001)	superfamily_HD-domain/PDEase-like
PCNT	5116	genome.wustl.edu	37	21	47786998	47786998	+	Missense_Mutation	SNP	G	G	A	rs119479063	byCluster;byFrequency	TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.E1037K	0.000	45	2.2%	60	41.7%	6	33.3%	benign(0.04)	tolerated(0.2)	neutral(0.052)	NULL
PCNT	5116	genome.wustl.edu	37	21	47850015	47850015	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.S2594	0.000	198	0%	220	32.7%	9	0%	-	-	-	NULL
MICAL3	57553	genome.wustl.edu	37	22	18305806	18305806	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.L1072	1.000	315	0%	251	32.3%	3	100%	-	-	-	NULL
MICAL3	57553	genome.wustl.edu	37	22	18385447	18385447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.N180S	1.000	614	0%	732	32.1%	4	0%	possibly_damaging(0.521)	tolerated(0.21)	neutral(0.219)	superfamily_FAD/NAD(P)-binding domain
ARVCF	421	genome.wustl.edu	37	22	19960455	19960455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001670.1	-1	reviewed	p.R848H	1.000	110	0%	116	37.1%	30	40%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
PI4KA	5297	genome.wustl.edu	37	22	21150544	21150544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058004.2	-1	reviewed	p.E665K	1.000	130	0%	134	38.1%	8	37.5%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
PPIL2	23759	genome.wustl.edu	37	22	22049097	22049097	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148176.2	+1	reviewed	p.A441	0.020	53	0%	76	43.4%	38	39.4%	-	-	-	NULL
IGLV9-49	28773	genome.wustl.edu	37	22	22697914	22697914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427632	+1	known	p.R68*	0.000	219	0%	206	37.9%	40	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MYO18B	84700	genome.wustl.edu	37	22	26423052	26423052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.P2371H	0.000	98	0%	100	28%	2	50%	benign(0.09)	deleterious(0.05)	neutral(0.352)	NULL
MN1	4330	genome.wustl.edu	37	22	28193433	28193433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002430.2	-1	reviewed	p.K1033N	1.000	13	0%	10	40%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
RFPL1	5988	genome.wustl.edu	37	22	29837764	29837764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021026.2	+1	validated	p.R203C	0.025	359	0%	416	28.1%	0	-	benign(0.099)	tolerated(0.08)	neutral(0.307)	HMMPfam_SPRY,HMMSmart_SPRY
THOC5	8563	genome.wustl.edu	37	22	29945123	29945123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002877.1	-1	validated	p.S5L	0.999	449	0%	577	32.9%	14	35.7%	benign(0.086)	tolerated(0.13)	neutral(0.259)	NULL
SEC14L2	23541	genome.wustl.edu	37	22	30803470	30803470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012429.2	+1	reviewed	p.D101N	1.000	226	0%	220	31.8%	13	23%	benign(0.01)	tolerated(0.41)	neutral(0.015)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
ENSG00000251232	0	genome.wustl.edu	37	22	32017070	32017070	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422296	-1	known	p.I422T	1.000	137	0%	105	25.7%	24	41.6%	-	-	-	HMMPfam_PS_Dcarbxylase
TMPRSS6	164656	genome.wustl.edu	37	22	37462136	37462136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153609.2	-1	reviewed	p.Q807R	1.000	39	0%	45	48.9%	1	0%	benign(0.271)	tolerated(0.28)	neutral(0.060)	superfamily_Trypsin-like serine proteases
CARD10	29775	genome.wustl.edu	37	22	37906309	37906314	+	In_Frame_Del	DEL	CTCCTT	CTCCTT	-	rs113275238	byCluster;by1000genomes	TCGA-B5-A11H-01	TCGA-B5-A11H-01	CTCCTT	CTCCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014550.3	-1	reviewed	p.KE272in_frame_del	0.939:0.949:0.957:0.963:0.966:0.967	-	-	-	-	-	-	-	-	-	NULL
ENSG00000184949	0	genome.wustl.edu	37	22	38993347	38993347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355830	-1	known	p.T465M	0.011	198	0.5%	230	33%	0	-	benign(0.251)	deleterious(0)	deleterious(0.470)	NULL
GTPBP1	9567	genome.wustl.edu	37	22	39122094	39122094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004286.4	+1	reviewed	p.R386H	1.000	196	0%	209	28.7%	28	21.4%	possibly_damaging(0.839)	tolerated(0.28)	neutral(0.352)	superfamily_SSF52540
MGAT3	4248	genome.wustl.edu	37	22	39883586	39883586	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098270.1	+1	reviewed	p.S78	0.250	28	0%	22	31.8%	0	-	-	-	-	NULL
SGSM3	27352	genome.wustl.edu	37	22	40803483	40803483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015705.4	+1	validated	p.R479C	0.998	14	0%	11	63.6%	183	44.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SH3-domain
TEF	7008	genome.wustl.edu	37	22	41783395	41783395	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413942	+1	known	p.P32L	0.000	81	0%	101	43.6%	2	50%	-	-	-	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43603587	43603587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173050.2	-1	validated	p.R923C	0.977	279	0%	221	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0930	23313	genome.wustl.edu	37	22	45601152	45601152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015264.1	-1	validated	p.E159D	0.999	201	0%	222	34.7%	44	31.8%	benign(0.184)	tolerated(0.19)	neutral(0.067)	HMMPfam_DUF2045
SMC1B	27127	genome.wustl.edu	37	22	45809367	45809367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148674.3	-1	validated	p.T28A	1.000	40	0%	29	31%	0	-	benign(0.349)	deleterious(0.01)	deleterious(0.516)	HMMPfam_SMC_N,superfamily_SSF52540
NCAPH2	29781	genome.wustl.edu	37	22	50956004	50956004	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152299.3	+1	reviewed	e4-2	1.000	85	0%	75	20%	2	100%	-	-	-	-
SHANK3	85358	genome.wustl.edu	37	22	51113643	51113643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080420.1	+1	reviewed	p.Y77*	1.000	3	0.000	7	0.571	1	100%	-	-	-	NULL
XG	7499	genome.wustl.edu	37	X	2712615	2712615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141919.1	+1	reviewed	p.P98L	0.639	69	0%	59	30.5%	52	44.2%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
ARSD	414	genome.wustl.edu	37	X	2825573	2825573	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001669.2	-1	reviewed	p.G507	0.030	39	0%	40	40%	61	45.9%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
GEMIN8	54960	genome.wustl.edu	37	X	14038642	14038642	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042479.1	-1	reviewed	p.S9	0.000	129	0%	143	32.2%	14	92.8%	-	-	-	NULL
ACE2	59272	genome.wustl.edu	37	X	15599408	15599408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021804.2	-1	reviewed	p.P336S	1.000	228	0%	256	22.7%	0	-	possibly_damaging(0.562)	deleterious(0.05)	deleterious(0.537)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
RAI2	10742	genome.wustl.edu	37	X	17819574	17819574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021785.4	-1	reviewed	p.A186V	1.000	74	0%	75	25.3%	136	13.9%	unknown(0)	deleterious(0.02)	-	NULL
GPR64	10149	genome.wustl.edu	37	X	19022950	19022950	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079858.2	-1	validated	p.T629	0.637	247	0%	274	31.4%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
BCOR	54880	genome.wustl.edu	37	X	39932909	39932909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.A564T	0.001	131	0%	130	33.1%	14	0%	benign(0.15)	deleterious(0.03)	neutral(0.378)	NULL
ZNF182	7569	genome.wustl.edu	37	X	47836769	47836769	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.C239	1.000	227	0%	282	28.4%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC729275	729275	genome.wustl.edu	37	X	48434171	48434171	+	RNA	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078586.1	-1	model	NULL	1.000	23	0%	21	28.6%	5	60%	-	-	-	-
GRIPAP1	56850	genome.wustl.edu	37	X	48853699	48853699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020137.3	-1	reviewed	p.R90H	0.999	243	0.4%	282	25.9%	29	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49061736	49061736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.T1932M	0.988	77	0%	67	37.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49081242	49081242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.R631G	1.000	159	0%	152	33.6%	0	-	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LOC644310	644310	genome.wustl.edu	37	X	51666670	51666670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_927480.2	+1	model	p.A8V	0.001	31	0%	45	26.7%	0	-	-	-	-	HMMPfam_UCR_UQCRX_QCR9,superfamily_Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SMC1A	8243	genome.wustl.edu	37	X	53432045	53432045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006306.2	-1	reviewed	p.R699C	1.000	196	0%	180	38.3%	5	80%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_SMC_N,superfamily_SSF52540
HUWE1	10075	genome.wustl.edu	37	X	53561525	53561525	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.S3295P	1.000	392	0%	440	31.6%	161	0%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
FAM120C	54954	genome.wustl.edu	37	X	54143174	54143174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017848.4	-1	validated	p.T706P	1.000	262	0%	268	24.3%	2	50%	possibly_damaging(0.513)	tolerated(0.18)	neutral(0.228)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54815012	54815012	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.P229	0.000	164	0%	184	25.5%	0	-	-	-	-	NULL
HEPH	9843	genome.wustl.edu	37	X	65420521	65420521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.Q671H	0.111	249	0%	286	29.7%	12	0%	benign(0.409)	tolerated(0.2)	neutral(0.181)	superfamily_Cupredoxins
STARD8	9754	genome.wustl.edu	37	X	67937819	67937819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142503.2	+1	reviewed	p.Y355H	1.000	69	0%	79	30.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLC16A2	6567	genome.wustl.edu	37	X	73744533	73744533	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006517.3	+1	reviewed	p.A379	0.995	197	0%	145	30.3%	1	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
APOOL	139322	genome.wustl.edu	37	X	84329026	84329026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198450.4	+1	validated	p.A170V	1.000	329	0%	368	29.1%	8	0%	benign(0.252)	tolerated(0.28)	neutral(0.057)	HMMPfam_ApoO
SATL1	340562	genome.wustl.edu	37	X	84349224	84349227	+	Frame_Shift_Del	DEL	CAGT	CAGT	-	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	CAGT	CAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012980.2	-1	validated	p.T408fs	0.001:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	superfamily_Acyl_CoA_acyltransferase
DACH2	117154	genome.wustl.edu	37	X	85994832	85994832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053281.3	+1	reviewed	p.S396N	1.000	369	0.3%	299	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91132014	91132014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.P259S	1.000	358	0%	439	31.2%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Cadherin,superfamily_Cadherin-like
DIAPH2	1730	genome.wustl.edu	37	X	96136601	96136601	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.H157	1.000	309	0.3%	380	20%	0	-	-	-	-	HMMPfam_Drf_GBD
GPRASP2	114928	genome.wustl.edu	37	X	101970123	101970123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.R109H	0.266	63	0%	68	22.1%	2	100%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
RAB40A	142684	genome.wustl.edu	37	X	102755289	102755289	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080879.2	-1	reviewed	p.F132	1.000	172	0%	157	22.3%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
NUP62CL	54830	genome.wustl.edu	37	X	106397376	106397376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017681.2	-1	validated	p.A99T	1.000	305	0%	285	32.6%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nsp1_C
COL4A6	1288	genome.wustl.edu	37	X	107402840	107402840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	p.V1556A	1.000	191	0%	142	28.2%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
AMOT	154796	genome.wustl.edu	37	X	112034003	112034003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113490.1	-1	reviewed	p.G645D	1.000	327	0.6%	336	31.8%	1	100%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
THOC2	57187	genome.wustl.edu	37	X	122866865	122866865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.A3V	1.000	216	0%	176	35.8%	0	-	benign(0.076)	deleterious(0.03)	neutral(0.370)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123514605	123514605	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.R2653	0.023	431	0%	416	38.2%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123515069	123515069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.P2499S	1.000	224	0%	209	28.2%	0	-	benign(0.003)	tolerated(0.31)	neutral(0.027)	NULL
AIFM1	9131	genome.wustl.edu	37	X	129263605	129263605	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004208.3	-1	reviewed	e16-2	0.998	575	0%	493	29.4%	1	0%	-	-	-	-
SLC9A6	10479	genome.wustl.edu	37	X	135067942	135067942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042537.1	+1	reviewed	p.R94H	1.000	113	0%	89	20.2%	3	0%	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	HMMPfam_Na_H_Exchanger
GPR112	139378	genome.wustl.edu	37	X	135427082	135427082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.T406N	0.000	102	0%	110	24.5%	0	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144904922	144904922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.I327V	0.996	135	0%	109	28.4%	0	-	benign(0.036)	tolerated(0.29)	neutral(0.031)	NULL
MIR508	574513	genome.wustl.edu	37	X	146318525	146318525	+	RNA	SNP	A	A	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384857	-1	known	NULL	0.000	173	0%	155	29.7%	0	-	-	-	-	-
MAGEA8	4107	genome.wustl.edu	37	X	149013295	149013295	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005364.4	+1	reviewed	p.S83	0.002	86	0%	109	23.9%	83	0%	-	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150840979	150840979	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.Q588*	0.001	287	0%	313	32.3%	0	-	-	-	-	NULL
PRRG3	79057	genome.wustl.edu	37	X	150869031	150869031	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024082.3	+1	validated	p.S74	0.000	108	0%	82	31.7%	0	-	-	-	-	superfamily_VitK_dep_GLA
GABRE	2564	genome.wustl.edu	37	X	151123557	151123557	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004961.3	-1	reviewed	e9-1	0.074	100	0%	90	27.8%	0	-	-	-	-	-
GABRE	2564	genome.wustl.edu	37	X	151143051	151143052	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004961.3	-1	reviewed	p.L16fs	0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
PNCK	139728	genome.wustl.edu	37	X	152936962	152936962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449157	-1	known	p.L194M	0.002	91	0%	66	33.3%	3	0%	-	-	-	NULL
ABCD1	215	genome.wustl.edu	37	X	152991071	152991071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000033.3	+1	reviewed	p.R117M	0.285	36	0%	22	45.5%	6	66.6%	benign(0.124)	deleterious(0.04)	neutral(0.359)	HMMPfam_ABC_membrane_2
ABCD1	215	genome.wustl.edu	37	X	152991286	152991286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000033.3	+1	reviewed	p.R189W	0.988	81	0%	48	29.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane_2
L1CAM	3897	genome.wustl.edu	37	X	153135530	153135530	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.A324	0.219	114	0%	110	21.8%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OPN1MW	2652	genome.wustl.edu	37	X	153459134	153459134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000513.2	+1	reviewed	p.R327Q	1.000	352	0.3%	428	30.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
IL9R	3581	genome.wustl.edu	37	X	155230994	155230994	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11H-01	TCGA-B5-A11H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000489233	+1	known	NULL	0.000	248	0%	227	35.2%	0	-	-	-	-	-
