Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
VANGL1	81839	genome.wustl.edu	37	1	116206829	116206829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138959.2	+1	reviewed	p.T251M	1.000	123	0%	135	39.3%	16	37.5%	possibly_damaging(0.89)	tolerated(0.2)	neutral(0.399)	HMMPfam_Strabismus
FLG	2312	genome.wustl.edu	37	1	152285749	152285749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.R538T	0.000	565	0%	819	13.7%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
ATP1A2	477	genome.wustl.edu	37	1	160093164	160093164	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000702.3	+1	reviewed	p.Y113	0.993	136	0%	174	19.5%	0	-	-	-	-	HMMPfam_Cation_ATPase_N,superfamily_SSF81665
KHK	3795	genome.wustl.edu	37	2	27320460	27320460	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000221.2	+1	reviewed	p.S169	0.005	63	0%	51	43.1%	1	0%	-	-	-	superfamily_Ribokinase-like
RBM43	375287	genome.wustl.edu	37	2	152107915	152107915	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198557.2	-1	validated	p.Q193	0.000	387	0%	372	36.6%	5	60%	-	-	-	NULL
NMI	9111	genome.wustl.edu	37	2	152132032	152132032	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004688.2	-1	reviewed	p.S200	0.000	192	0%	141	41.1%	71	33.8%	-	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179701756	179701756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.A822V	0.959	194	0%	160	38.1%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47046765	47046765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.R2172C	1.000	52	0%	37	13.5%	49	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beach,superfamily_BEACH domain
EPHA6	285220	genome.wustl.edu	37	3	97167526	97167526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080448.2	+1	provisional	p.G616R	1.000	336	0%	243	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL6A5	256076	genome.wustl.edu	37	3	130187695	130187695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.V2283I	0.028	180	0%	136	44.9%	0	-	benign(0.01)	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178951964	178951964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.G1007R	1.000	318	0%	198	35.9%	15	53.3%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
PIK3CA	5290	genome.wustl.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.M1043V	1.000	238	0%	191	38.7%	19	31.5%	benign(0.123)	deleterious(0.01)	neutral(0.416)	HMMSmart_PI3Kc,superfamily_Kinase_like
HRG	3273	genome.wustl.edu	37	3	186395044	186395044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000412.2	+1	reviewed	p.P317H	0.000	488	0.2%	494	35.2%	0	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
MUC4	4585	genome.wustl.edu	37	3	195517843	195517843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.T203M	0.000	592	0.2%	506	41.5%	0	-	probably_damaging(0.997)	tolerated(0.23)	deleterious(0.508)	NULL
GPRIN3	285513	genome.wustl.edu	37	4	90170279	90170279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198281.2	-1	validated	p.V328G	0.112	77	0%	59	33.9%	3	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
STOX2	56977	genome.wustl.edu	37	4	184827971	184827971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020225.1	+1	provisional	p.R10G	1.000	28	0%	16	43.8%	0	-	possibly_damaging(0.852)	deleterious(0.01)	deleterious(0.733)	NULL
TRIO	7204	genome.wustl.edu	37	5	14290858	14290858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.V192I	1.000	297	0%	242	36%	3	0%	unknown(0)	tolerated(1)	-	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
DAB2	1601	genome.wustl.edu	37	5	39390554	39390554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.G152R	1.000	212	0%	144	34%	13	15.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
HAPLN1	1404	genome.wustl.edu	37	5	82948398	82948398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001884.3	-1	validated	p.G116R	0.091	263	0%	181	34.3%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LRRTM2	26045	genome.wustl.edu	37	5	138208801	138208801	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015564.2	-1	validated	p.P483	0.900	363	0.3%	299	35.1%	0	-	-	-	-	NULL
UBR2	23304	genome.wustl.edu	37	6	42584989	42584989	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015255.2	+1	reviewed	p.Q398	1.000	477	0%	401	47.4%	5	40%	-	-	-	NULL
TFAP2B	7021	genome.wustl.edu	37	6	50810959	50810959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003221.3	+1	reviewed	p.A413T	1.000	55	1.8%	60	18.3%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_TF_AP-2
INVS	27130	genome.wustl.edu	37	9	102992081	102992081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014425.2	+1	reviewed	p.S196N	1.000	249	0%	191	14.7%	8	25%	possibly_damaging(0.676)	tolerated(0.18)	neutral(0.296)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PTEN	5728	genome.wustl.edu	37	10	89717715	89717716	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.P248fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ATHL1	80162	genome.wustl.edu	37	11	292052	292052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025092.4	+1	validated	p.T328M	0.742	67	0%	41	41.5%	91	34%	probably_damaging(0.978)	tolerated(0.14)	deleterious(0.670)	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
NUP98	4928	genome.wustl.edu	37	11	3722049	3722049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.K1178R	1.000	316	0%	296	39.5%	24	41.6%	probably_damaging(0.992)	tolerated(0.22)	deleterious(0.489)	NULL
PAX6	5080	genome.wustl.edu	37	11	31815103	31815103	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001604.4	-1	reviewed	e9-2	1.000	490	0%	443	38.8%	2	100%	-	-	-	-
CD248	57124	genome.wustl.edu	37	11	66082337	66082337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020404.2	-1	validated	p.R721H	0.303	57	0%	38	26.3%	27	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66454626	66454626	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.N2245	0.154	27	0%	35	34.3%	19	47.3%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00150,superfamily_PH domain-like
MMP10	4319	genome.wustl.edu	37	11	102649988	102649988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002425.2	-1	reviewed	p.L151Q	0.000	541	0%	350	40%	3	0%	possibly_damaging(0.639)	deleterious(0)	deleterious(0.668)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
KDELC1	79070	genome.wustl.edu	37	13	103443397	103443397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024089.2	-1	reviewed	p.R313C	1.000	268	0%	181	34.3%	5	40%	possibly_damaging(0.474)	tolerated(0.12)	neutral(0.417)	HMMSmart_CAP10,HMMPfam_DUF821
PRKCH	5583	genome.wustl.edu	37	14	61857945	61857945	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006255.3	+1	reviewed	p.V122	1.000	222	0%	184	38%	6	33.3%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SNAPC1	6617	genome.wustl.edu	37	14	62229196	62229196	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003082.3	+1	validated	p.G6	0.998	74	0%	61	39.3%	5	80%	-	-	-	HMMPfam_SNAPc_SNAP43
GALNTL1	57452	genome.wustl.edu	37	14	69792121	69792121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020692.2	+1	validated	p.P168S	1.000	487	0%	322	42.2%	6	83.3%	possibly_damaging(0.916)	tolerated(0.18)	neutral(0.423)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
FBLN5	10516	genome.wustl.edu	37	14	92353550	92353550	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006329.3	-1	reviewed	p.G242	0.000	256	0%	156	34.6%	30	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
AHNAK2	113146	genome.wustl.edu	37	14	105420793	105420793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.S332L	0.001	91	0%	78	25.6%	0	-	benign(0.29)	deleterious(0)	deleterious(0.534)	NULL
RYR3	6263	genome.wustl.edu	37	15	33855189	33855189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.R375H	1.000	222	0.5%	184	37.5%	0	-	probably_damaging(0.999)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)
MYO5A	4644	genome.wustl.edu	37	15	52676446	52676446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.R609H	1.000	417	0.2%	376	39.1%	0	-	possibly_damaging(0.771)	tolerated(0.07)	deleterious(0.605)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NTRK3	4916	genome.wustl.edu	37	15	88726684	88726684	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.P120	1.000	178	0%	134	29.9%	1	0%	-	-	-	superfamily_L domain-like
NTRK3	4916	genome.wustl.edu	37	15	88799222	88799222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.P55S	1.000	508	0%	342	36.5%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_LRRNT,HMMSmart_SM00013
CACNA1H	8912	genome.wustl.edu	37	16	1261517	1261517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021098.2	+1	reviewed	p.D1463N	0.999	56	0%	36	36.1%	1	0%	benign(0.23)	tolerated(0.16)	neutral(0.082)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KIAA0430	9665	genome.wustl.edu	37	16	15696480	15696481	+	Frame_Shift_Ins	INS	-	-	AGGAAAGAAGGAGGGAGGCAGAG	rs79821793		TCGA-B5-A11S-01	TCGA-B5-A11S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344181	-1	known	p.P1114fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SCN4A	6329	genome.wustl.edu	37	17	62049140	62049140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.D185N	0.302	64	0%	41	14.6%	0	-	benign(0.135)	tolerated(0.15)	neutral(0.253)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
AZI1	22994	genome.wustl.edu	37	17	79174223	79174223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014984.2	-1	validated	p.A271D	1.000	22	0%	10	40%	9	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
C17orf70	80233	genome.wustl.edu	37	17	79514366	79514366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025161.5	-1	validated	p.T430M	0.963	15	6.7%	23	39.1%	18	38.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IZUMO4	113177	genome.wustl.edu	37	19	2098980	2098980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039846.1	+1	validated	p.R187H	0.000	40	0%	31	38.7%	1	0%	possibly_damaging(0.836)	tolerated(0.14)	deleterious(0.569)	NULL
MUC16	94025	genome.wustl.edu	37	19	9062881	9062881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S8189P	0.000	275	0%	238	37%	0	-	unknown(0)	-	-	NULL
P2RY11	5032	genome.wustl.edu	37	19	10224429	10224429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002566.4	+1	reviewed	p.G47V	0.090	33	0%	35	31.4%	16	25%	benign(0.251)	tolerated(0.47)	neutral(0.036)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF486	90649	genome.wustl.edu	37	19	20307780	20307780	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052852.2	+1	provisional	p.C87*	0.889	368	0%	282	31.2%	0	-	-	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36595775	36595775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.G1473R	0.001	24	0%	23	17.4%	6	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
AP5S1	55317	genome.wustl.edu	37	20	3804885	3804885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018347.1	+1	predicted	p.L182F	1.000	105	0%	71	38%	14	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PTPRT	11122	genome.wustl.edu	37	20	41400075	41400075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133170.3	-1	reviewed	p.Q228H	1.000	110	0%	105	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
TPTE	7179	genome.wustl.edu	37	21	10934946	10934946	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.N283H	1.000	1336	0%	1069	13.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_(Phosphotyrosine protein) phosphatases II
KRTAP13-2	337959	genome.wustl.edu	37	21	31720557	31720557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448917	-1	known	p.R108C	0.076	243	0%	147	16.3%	0	-	-	-	-	HMMPfam_PMG
CCT8L2	150160	genome.wustl.edu	37	22	17072972	17072972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11S-01	TCGA-B5-A11S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014406.4	-1	validated	p.P157T	0.016	111	0%	77	11.7%	0	-	possibly_damaging(0.477)	tolerated(0.18)	neutral(0.213)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
