Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AFTPH	54812	genome.wustl.edu	37	2	64779110	64779110	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	64779110	64779110	T	G	SNP	AFTPH	NM_203437	human	genbank	57_37b	+1	validated	missense	c.502	p.L168V	0.995	NULL	PatternScan_EF_HAND_1	-	no_errors	
ATP1B1	481	genome.wustl.edu	37	1	169076073	169076073	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169076073	169076073	C	G	SNP	ATP1B1	NM_001677	human	genbank	57_37b	+1	reviewed	silent	c.6	p.A2	0.998	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors	
BTN2A3	54718	genome.wustl.edu	37	6	26426628	26426628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26426628	26426628	G	A	SNP	BTN2A3	ENST00000297020	human	ensembl	57_37b	+1	known	missense	c.583	p.A195T	0.000	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IGv,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
C20orf79	140856	genome.wustl.edu	37	20	18794881	18794881	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18794881	18794881	T	C	SNP	C20orf79	NM_178483	human	genbank	57_37b	+1	validated	missense	c.422	p.L141P	1.000	superfamily_SCP2,HMMPfam_SCP2	superfamily_SCP2,HMMPfam_SCP2	-	no_errors	
C6orf208	80069	genome.wustl.edu	37	6	170201195	170201195	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	170201195	170201195	C	T	SNP	C6orf208	NR_026780	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.005	-	-	-	no_errors	
C9orf25	203259	genome.wustl.edu	37	9	34401098	34401098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34401098	34401098	A	G	SNP	C9orf25	NM_147202	human	genbank	57_37b	-1	validated	missense	c.371	p.I124T	1.000	NULL	NULL	-	no_errors	
CACNA1C	775	genome.wustl.edu	37	12	2676748	2676748	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2676748	2676748	G	A	SNP	CACNA1C	NM_199460	human	genbank	57_37b	+1	reviewed	silent	c.1683	p.K561	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CDCA2	157313	genome.wustl.edu	37	8	25360909	25360909	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25360909	25360909	G	A	SNP	CDCA2	NM_152562	human	genbank	57_37b	+1	validated	silent	c.1692	p.K564	1.000	NULL	NULL	-	no_errors	
CHRNB3	1142	genome.wustl.edu	37	8	42587659	42587659	+	Silent	SNP	G	G	C	rs4953	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42587659	42587659	G	C	SNP	CHRNB3	NM_000749	human	genbank	57_37b	+1	validated	silent	c.1209	p.S403	0.001	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-		
CNGB3	54714	genome.wustl.edu	37	8	87623885	87623885	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	87623885	87623885	C	T	SNP	CNGB3	NM_019098	human	genbank	57_37b	-1	reviewed	silent	c.1593	p.Q531	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors	
ENSG00000246763	0	genome.wustl.edu	37	5	98106564	98106564	+	RNA	SNP	C	T	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	98106564	98106564	C	T	SNP	ENSG00000246763	ENST00000501938	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000248090	0	genome.wustl.edu	37	16	18796542	18796542	+	RNA	SNP	T	A	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18796542	18796542	T	A	SNP	ENSG00000248090	ENST00000501263	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
GPSM2	29899	genome.wustl.edu	37	1	109444429	109444429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109444429	109444429	C	T	SNP	GPSM2	NM_013296	human	genbank	57_37b	+1	validated	missense	c.815	p.A272V	1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_GoLoco,HMMSmart_GoLoco	-	no_errors	
GRM6	2916	genome.wustl.edu	37	5	178413950	178413950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178413950	178413950	G	A	SNP	GRM6	NM_000843	human	genbank	57_37b	-1	reviewed	silent	c.1389	p.N463	0.319	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
LDHC	3948	genome.wustl.edu	37	11	18456442	18456442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18456442	18456442	G	A	SNP	LDHC	NM_002301	human	genbank	57_37b	+1	reviewed	missense	c.574	p.E192K	1.000	superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C,PatternScan_L_LDH	superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C,PatternScan_L_LDH	-	no_errors	
LRP12	29967	genome.wustl.edu	37	8	105509765	105509765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	105509765	105509765	C	T	SNP	LRP12	NM_013437	human	genbank	57_37b	-1	reviewed	missense	c.1015	p.A339T	0.998	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors	
MMEL1	79258	genome.wustl.edu	37	1	2524333	2524334	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2524333	2524334	-	C	INS	MMEL1	NM_033467	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1913_1912	p.Q638fs	1.000:1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors	
NBPF9	440670	genome.wustl.edu	37	1	146403703	146403703	+	Missense_Mutation	SNP	T	T	G	rs77264529	byCluster;byFrequency	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	146403703	146403703	T	G	SNP	NBPF9	XM_001717398	human	genbank	57_37b	+1	model	missense	c.224	p.L75R	0.010	NULL	HMMPfam_DUF1220	-		
NEIL3	55247	genome.wustl.edu	37	4	178274553	178274553	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	178274553	178274553	C	T	SNP	NEIL3	NM_018248	human	genbank	57_37b	+1	validated	silent	c.1131	p.V377	0.782	NULL	superfamily_N-terminal domain of MutM-like DNA repair proteins,HMMPfam_H2TH,superfamily_S13-like H2TH domain,PatternScan_ZF_FPG_1,superfamily_NZF domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_zf-GRF	-	no_errors	
PCDHB12	56124	genome.wustl.edu	37	5	140590839	140590839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140590839	140590839	C	T	SNP	PCDHB12	NM_018932	human	genbank	57_37b	+1	reviewed	missense	c.2360	p.P787L	0.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHB3	56132	genome.wustl.edu	37	5	140481610	140481610	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140481610	140481610	C	T	SNP	PCDHB3	NM_018937	human	genbank	57_37b	+1	reviewed	silent	c.1377	p.F459	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PLCB3	5331	genome.wustl.edu	37	11	64026685	64026685	+	Silent	SNP	C	T	T	rs28395882	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64026685	64026685	C	T	SNP	PLCB3	NM_000932	human	genbank	57_37b	+1	provisional	silent	c.1494	p.S498	0.001	superfamily_PLC-like phosphodiesterases	superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C	-		
PRR23C	0	genome.wustl.edu	37	3	138762902	138762902	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138762902	138762902	G	A	SNP	PRR23C	NM_001134657	human	genbank	57_37b	-1	validated	silent	c.561	p.S187	0.000	HMMPfam_DUF2476	HMMPfam_DUF2476	-	no_errors	
SIDT2	51092	genome.wustl.edu	37	11	117063891	117063891	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117063891	117063891	C	T	SNP	SIDT2	NM_001040455	human	genbank	57_37b	+1	validated	missense	c.2128	p.R710C	1.000	NULL	NULL	-	no_errors	
SIM1	6492	genome.wustl.edu	37	6	100895183	100895183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	100895183	100895183	G	A	SNP	SIM1	NM_005068	human	genbank	57_37b	-1	reviewed	missense	c.959	p.S320F	1.000	superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_SIM_C	-	no_errors	
TIGD2	166815	genome.wustl.edu	37	4	90034880	90034880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	90034880	90034880	A	G	SNP	TIGD2	NM_145715	human	genbank	57_37b	+1	reviewed	missense	c.755	p.Q252R	1.000	HMMPfam_DDE	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179397545	179397545	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179397545	179397545	T	-	DEL	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	frame_shift_del	c.96087	p.R32029fs	0.999	NULL	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[179394968,179400576])	no_errors	
WSCD2	9671	genome.wustl.edu	37	12	108603963	108603963	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108603963	108603963	C	T	SNP	WSCD2	NM_014653	human	genbank	57_37b	+1	validated	missense	c.563	p.T188M	0.085	HMMSmart_SM00321,HMMPfam_WSC	HMMSmart_SM00321,HMMPfam_WSC,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ZWILCH	55055	genome.wustl.edu	37	15	66821838	66821838	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0IA-01	TCGA-B6-A0IA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66821838	66821838	T	A	SNP	ZWILCH	NM_017975	human	genbank	57_37b	+1	validated	missense	c.1082	p.I361N	0.033	HMMPfam_DUF2352	HMMPfam_DUF2352	-	no_errors	
