Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM21	8747	hgsc.bcm.edu	37	14	70925981	70925981	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AGL	178	hgsc.bcm.edu	37	1	100349684	100349684	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ALB	213	hgsc.bcm.edu	37	4	74270047	74270047	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKHD1	54882	hgsc.bcm.edu	37	5	139866633	139866633	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD27	84079	hgsc.bcm.edu	37	19	33122332	33122332	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGEF11	9826	hgsc.bcm.edu	37	1	156909608	156909608	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARPC3	10094	hgsc.bcm.edu	37	12	110878193	110878193	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATG3	64422	hgsc.bcm.edu	37	3	112269052	112269052	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATG4A	115201	hgsc.bcm.edu	37	X	107380399	107380399	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATL3	25923	hgsc.bcm.edu	37	11	63426605	63426605	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108106479	108106479	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108128265	108128265	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
B3GAT2	135152	hgsc.bcm.edu	37	6	71571587	71571587	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAI3	577	hgsc.bcm.edu	37	6	70070993	70070993	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRAF	673	hgsc.bcm.edu	37	7	140449169	140449169	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRAF	673	hgsc.bcm.edu	37	7	140453172	140453172	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C12orf40	283461	hgsc.bcm.edu	37	12	40078684	40078684	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C14orf166B	145497	hgsc.bcm.edu	37	14	77327095	77327095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C3orf67	200844	hgsc.bcm.edu	37	3	58923375	58923375	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C7	730	hgsc.bcm.edu	37	5	40947837	40947837	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAPSL	133690	hgsc.bcm.edu	37	5	35921149	35921149	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASC1	55259	hgsc.bcm.edu	37	12	25297493	25297493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCAR1	55749	hgsc.bcm.edu	37	10	70515218	70515218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC153	283152	hgsc.bcm.edu	37	11	119061494	119061494	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDKN2A	1029	hgsc.bcm.edu	37	9	21971131	21971131	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHEK1	1111	hgsc.bcm.edu	37	11	125514020	125514020	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLSTN2	64084	hgsc.bcm.edu	37	3	140122627	140122627	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL1A2	1278	hgsc.bcm.edu	37	7	94057764	94057764	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL9A3	1299	hgsc.bcm.edu	37	20	61448957	61448957	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CREB5	9586	hgsc.bcm.edu	37	7	28758481	28758481	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTXN2	399697	hgsc.bcm.edu	37	15	48493508	48493508	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DAB1	1600	hgsc.bcm.edu	37	1	57476905	57476905	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DAGLA	747	hgsc.bcm.edu	37	11	61504731	61504731	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDX55	57696	hgsc.bcm.edu	37	12	124094627	124094627	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DEDD	9191	hgsc.bcm.edu	37	1	161093708	161093708	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNASE2B	58511	hgsc.bcm.edu	37	1	84864268	84864268	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DPEP2	64174	hgsc.bcm.edu	37	16	68026474	68026474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EHBP1L1	254102	hgsc.bcm.edu	37	11	65349886	65349886	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ELFN2	114794	hgsc.bcm.edu	37	22	37770642	37770642	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERCC4	2072	hgsc.bcm.edu	37	16	14041792	14041792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ESRRA	2101	hgsc.bcm.edu	37	11	64083296	64083298	+	In_Frame_Del	DEL	GGG	GGG	-	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	GGG	GGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
F13A1	2162	hgsc.bcm.edu	37	6	6305671	6305671	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM160A2	84067	hgsc.bcm.edu	37	11	6245048	6245048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM200A	221786	hgsc.bcm.edu	37	7	99145313	99145313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FANCE	2178	hgsc.bcm.edu	37	6	35423981	35423981	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAT3	120114	hgsc.bcm.edu	37	11	92592427	92592427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FGFR2	2263	hgsc.bcm.edu	37	10	123298197	123298197	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FILIP1	27145	hgsc.bcm.edu	37	6	76024398	76024398	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GABRA4	2557	hgsc.bcm.edu	37	4	46976378	46976378	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IARS2	55699	hgsc.bcm.edu	37	1	220318884	220318884	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
INSR	3643	hgsc.bcm.edu	37	19	7267483	7267483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KHDRBS1	10657	hgsc.bcm.edu	37	1	32504195	32504195	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0174	9798	hgsc.bcm.edu	37	16	71954710	71954710	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF15	56992	hgsc.bcm.edu	37	3	44867872	44867872	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP10-8	386681	hgsc.bcm.edu	37	21	46032493	46032493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LEMD3	23592	hgsc.bcm.edu	37	12	65634766	65634766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LIPK	643414	hgsc.bcm.edu	37	10	90497391	90497391	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LMO7	4008	hgsc.bcm.edu	37	13	76197424	76197424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRTM4	80059	hgsc.bcm.edu	37	2	77745898	77745898	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MGAT5	4249	hgsc.bcm.edu	37	2	135012008	135012008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MGC87042	256227	hgsc.bcm.edu	37	7	22534457	22534457	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL5	55904	hgsc.bcm.edu	37	7	104752614	104752614	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRPL15	29088	hgsc.bcm.edu	37	8	55049858	55049858	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MS4A12	54860	hgsc.bcm.edu	37	11	60264961	60264961	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC13	56667	hgsc.bcm.edu	37	3	124646754	124646754	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYO6	4646	hgsc.bcm.edu	37	6	76558103	76558103	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NDUFS1	4719	hgsc.bcm.edu	37	2	207008817	207008817	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NEK7	140609	hgsc.bcm.edu	37	1	198288568	198288568	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP2	55655	hgsc.bcm.edu	37	19	55497536	55497536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NR1H2	7376	hgsc.bcm.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	rs66783852	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NR1H4	9971	hgsc.bcm.edu	37	12	100934587	100934587	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PAK7	57144	hgsc.bcm.edu	37	20	9525073	9525073	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52682418	52682418	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHGA12	26025	hgsc.bcm.edu	37	5	140812776	140812776	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHC2	1912	hgsc.bcm.edu	37	1	33796958	33796958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHF8	23133	hgsc.bcm.edu	37	X	54019191	54019191	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHTF1	10745	hgsc.bcm.edu	37	1	114249243	114249243	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3CA	5290	hgsc.bcm.edu	37	3	178951994	178951994	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLAC9	219348	hgsc.bcm.edu	37	10	81904097	81904098	+	In_Frame_Ins	INS	-	-	AGA	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP1R12A	4659	hgsc.bcm.edu	37	12	80203747	80203747	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMC5	5705	hgsc.bcm.edu	37	17	61907491	61907491	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89717663	89717663	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	49030359	49030359	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ROD1	9991	hgsc.bcm.edu	37	9	115038125	115038125	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RTKN	6242	hgsc.bcm.edu	37	2	74655425	74655425	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEPP1	6414	hgsc.bcm.edu	37	5	42808420	42808420	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETBP1	26040	hgsc.bcm.edu	37	18	42530906	42530906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETBP1	26040	hgsc.bcm.edu	37	18	42530907	42530907	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC17A6	57084	hgsc.bcm.edu	37	11	22380986	22380986	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC2A2	6514	hgsc.bcm.edu	37	3	170723100	170723100	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC4A3	6508	hgsc.bcm.edu	37	2	220497001	220497001	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC4A4	8671	hgsc.bcm.edu	37	4	72316986	72316986	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC7A11	23657	hgsc.bcm.edu	37	4	139144404	139144404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMAD4	4089	hgsc.bcm.edu	37	18	48591792	48591792	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMG6	23293	hgsc.bcm.edu	37	17	2076117	2076117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SOS1	6654	hgsc.bcm.edu	37	2	39250004	39250004	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SSBP2	23635	hgsc.bcm.edu	37	5	80911317	80911317	+	Missense_Mutation	SNP	C	C	A	rs11555880	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STXBP5L	9515	hgsc.bcm.edu	37	3	120764285	120764285	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYNE2	23224	hgsc.bcm.edu	37	14	64545255	64545255	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCHHL1	126637	hgsc.bcm.edu	37	1	152060504	152060504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TET2	54790	hgsc.bcm.edu	37	4	106180780	106180780	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TKTL1	8277	hgsc.bcm.edu	37	X	153549205	153549205	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM185A	84548	hgsc.bcm.edu	37	X	148690436	148690436	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIP11	9321	hgsc.bcm.edu	37	14	92480701	92480701	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPC4AP	26133	hgsc.bcm.edu	37	20	33632315	33632315	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPV3	162514	hgsc.bcm.edu	37	17	3427603	3427603	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TXNL4B	54957	hgsc.bcm.edu	37	16	72120641	72120641	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UPF2	26019	hgsc.bcm.edu	37	10	12070760	12070760	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UQCRC2	7385	hgsc.bcm.edu	37	16	21968796	21968796	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP37	57695	hgsc.bcm.edu	37	2	219399406	219399406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191563	10191563	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR3	10885	hgsc.bcm.edu	37	1	118488748	118488748	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WFS1	7466	hgsc.bcm.edu	37	4	6303445	6303445	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFP36L1	677	hgsc.bcm.edu	37	14	69259623	69259623	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYND8	23613	hgsc.bcm.edu	37	20	45874860	45874860	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF286A	57335	hgsc.bcm.edu	37	17	15611545	15611545	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF439	90594	hgsc.bcm.edu	37	19	11979300	11979300	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF653	115950	hgsc.bcm.edu	37	19	11597943	11597943	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B8-4154-01	TCGA-B8-4154-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
