Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MTOR	2475	genome.wustl.edu	37	1	11269454	11269454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.S1239N	0.998	543	0%	463	61.8%	3	33.3%	benign(0.006)	tolerated(0.49)	neutral(0.011)	superfamily_ARM-type_fold
SRRM1	10250	genome.wustl.edu	37	1	24998048	24998048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005839.3	+1	validated	p.A858T	1.000	127	0%	81	53.1%	1	0%	unknown(0)	deleterious(0)	-	NULL
AGL	178	genome.wustl.edu	37	1	100350142	100350142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000028.2	+1	reviewed	p.H855R	0.995	131	0%	95	28.4%	1	0%	benign(0.025)	tolerated(0.44)	neutral(0.014)	NULL
ENSG00000207321	0	genome.wustl.edu	37	1	153304141	153304141	+	RNA	DEL	G	G	-	rs10707075	byCluster	TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384591	+1	novel	NULL	0.016	-	-	-	-	-	-	-	-	-	-
VANGL2	57216	genome.wustl.edu	37	1	160394931	160394931	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020335.1	+1	validated	p.A443	0.077	161	0%	126	36.5%	3	33.3%	-	-	-	HMMPfam_Strabismus
RC3H1	149041	genome.wustl.edu	37	1	173916554	173916554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172071.2	-1	validated	p.Q897R	1.000	66	0%	69	24.6%	1	0%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	NULL
NFASC	23114	genome.wustl.edu	37	1	204966474	204966474	+	Missense_Mutation	SNP	G	G	A	rs183209390	by1000genomes	TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367172	+1	known	p.A1094T	0.816	17	0%	48	22.9%	0	-	unknown(0)	tolerated(0.52)	-	NULL
GREB1	9687	genome.wustl.edu	37	2	11775464	11775464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.N1760S	1.000	68	0%	43	39.5%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MYO1B	4430	genome.wustl.edu	37	2	192250757	192250757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.N501D	1.000	407	0%	450	27.8%	8	25%	benign(0.035)	tolerated(0.68)	neutral(0.004)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GOLGA4	2803	genome.wustl.edu	37	3	37367662	37367662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.I1429V	0.013	279	0.4%	256	31.2%	2	0%	benign(0.002)	tolerated(0.61)	neutral(0.004)	NULL
DIRC2	84925	genome.wustl.edu	37	3	122591311	122591311	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032839.2	+1	reviewed	p.S396	0.017	253	0%	165	34.5%	1	100%	-	-	-	superfamily_MFS general substrate transporter
PIK3CA	5290	genome.wustl.edu	37	3	178936083	178936083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E542A	1.000	120	0%	74	23%	2	50%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
DCUN1D1	54165	genome.wustl.edu	37	3	182683524	182683524	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020640.2	-1	validated	p.S7	0.995	110	0%	108	32.4%	0	-	-	-	-	superfamily_UBA-like
MUC20	200958	genome.wustl.edu	37	3	195453399	195453399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152673.2	+1	reviewed	p.T471M	0.000	189	0%	118	23.7%	342	2.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MUC4	4585	genome.wustl.edu	37	3	195515449	195515449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.V1001A	0.027	13	0%	24	33.3%	4	0%	benign(0.193)	-	-	NULL
TACR3	6870	genome.wustl.edu	37	4	104640323	104640323	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001059.1	-1	reviewed	p.F170	0.998	208	0%	130	30.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TNIP3	79931	genome.wustl.edu	37	4	122078351	122078351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128843.1	-1	validated	p.S87R	0.002	385	0%	230	30.9%	0	-	benign(0.027)	tolerated(0.07)	neutral(0.321)	NULL
EMB	133418	genome.wustl.edu	37	5	49699177	49699177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198449.2	-1	reviewed	p.R238C	0.927	231	0%	185	31.9%	4	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMSmart_SM00409,superfamily_Immunoglobulin
ELL2	22936	genome.wustl.edu	37	5	95234255	95234255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012081.5	-1	validated	p.R405Q	1.000	259	0%	191	34%	4	0%	unknown(0)	tolerated(0.41)	-	NULL
PCDHGA11	56105	genome.wustl.edu	37	5	140802357	140802357	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.F521	0.344	141	0%	117	29.9%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GRIA1	2890	genome.wustl.edu	37	5	153182043	153182043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000827.3	+1	reviewed	p.R838Q	1.000	244	0%	275	29.5%	0	-	probably_damaging(0.956)	tolerated(0.09)	deleterious(0.696)	NULL
OR2J1	442185	genome.wustl.edu	37	6	29069161	29069161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377171	+1	known	p.A148T	0.001	499	0%	514	32.9%	0	-	probably_damaging(0.997)	tolerated(0.47)	deleterious(0.477)	HMMPfam_7tm_1,superfamily_SSF81321
TDRD6	221400	genome.wustl.edu	37	6	46659900	46659900	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.P1345	0.000	322	0%	270	38.5%	0	-	-	-	-	HMMPfam_TUDOR
GRM8	2918	genome.wustl.edu	37	7	126746621	126746621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000845.2	-1	reviewed	p.S219L	1.000	113	0%	148	29.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GLIS3	169792	genome.wustl.edu	37	9	3932433	3932433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042413.1	-1	reviewed	p.R637H	1.000	192	0%	155	29%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM189A2	9413	genome.wustl.edu	37	9	72002911	72002912	+	In_Frame_Ins	INS	-	-	GTTATA	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377216	+1	known	p.20in_frame_insYS	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77377340	77377340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.G1416V	0.000	290	0.3%	262	28.6%	0	-	benign(0.039)	tolerated(0.07)	neutral(0.321)	NULL
TLE1	7088	genome.wustl.edu	37	9	84199402	84199404	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005077.3	-1	provisional	p.L722in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CTSL2	1515	genome.wustl.edu	37	9	99797060	99797060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001333.2	-1	reviewed	p.G285S	1.000	120	0%	97	32%	372	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
ZNF883	169834	genome.wustl.edu	37	9	115759419	115759419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101338.1	-1	validated	p.K374R	0.003	69	0%	75	30.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
STXBP1	6812	genome.wustl.edu	37	9	130425489	130425489	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003165.3	+1	reviewed	p.Y145*	1.000	185	0%	168	26.2%	1	0%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
ARID5B	84159	genome.wustl.edu	37	10	63850619	63850619	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	e10-2	1.000	227	0%	171	32.7%	1	100%	-	-	-	-
NEUROG3	50674	genome.wustl.edu	37	10	71332419	71332419	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020999.3	-1	reviewed	p.F127	0.978	37	0%	32	21.9%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
EIF5AL1	143244	genome.wustl.edu	37	10	81272543	81272543	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099692.1	+1	validated	p.S46	1.000	151	0%	120	28.3%	11	0%	-	-	-	superfamily_Transl_SH3_like
PTEN	5728	genome.wustl.edu	37	10	89653857	89653857	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.D52fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
NOC3L	64318	genome.wustl.edu	37	10	96101431	96101431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022451.9	-1	provisional	p.G548V	1.000	98	0%	55	34.5%	0	-	probably_damaging(0.979)	tolerated(0.28)	neutral(0.454)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105363177	105363177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014631.2	-1	validated	p.R572W	1.000	116	0%	75	28%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
KBTBD4	55709	genome.wustl.edu	37	11	47594916	47594916	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018095.4	-1	validated	p.N391Y	1.000	158	0%	78	23.1%	44	56.8%	benign(0.081)	deleterious(0.04)	neutral(0.355)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
SPTBN2	6712	genome.wustl.edu	37	11	66460504	66460504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.A1641V	1.000	134	0%	171	26.3%	21	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G13D	1.000	85	0%	24	20.8%	3	0%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LIMA1	51474	genome.wustl.edu	37	12	50594602	50594602	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113546.1	-1	validated	p.P310	1.000	370	0%	326	27.6%	4	50%	-	-	-	NULL
NR2C1	7181	genome.wustl.edu	37	12	95425249	95425249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003297.2	-1	reviewed	p.I423M	1.000	108	0%	119	26.1%	4	25%	probably_damaging(0.961)	tolerated(0.06)	deleterious(0.727)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
BRAP	8315	genome.wustl.edu	37	12	112110570	112110570	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006768.3	-1	reviewed	p.A214	0.562	67	0%	58	31%	4	50%	-	-	-	HMMPfam_BRAP2
XPO4	64328	genome.wustl.edu	37	13	21417926	21417926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022459.4	-1	validated	p.C186R	1.000	147	0%	101	32.7%	0	-	benign(0.361)	tolerated(0.06)	neutral(0.437)	superfamily_ARM-type_fold
LOC643677	643677	genome.wustl.edu	37	13	103390701	103390701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.Y4045N	0.000	6	0.000	14	0.286	0	-	-	-	-	NULL
OR10G3	26533	genome.wustl.edu	37	14	22038134	22038134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005465.1	-1	validated	p.V248L	0.773	109	0%	85	30.6%	0	-	benign(0.175)	deleterious(0.01)	neutral(0.422)	HMMPfam_7tm_1,superfamily_SSF81321
MAGEL2	54551	genome.wustl.edu	37	15	23889144	23889144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019066.4	-1	reviewed	p.R646H	0.037	25	0%	14	28.6%	2	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
USP50	373509	genome.wustl.edu	37	15	50835873	50835873	+	Silent	SNP	T	T	G	rs60073047	byCluster;byFrequency;by1000genomes	TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203494.4	-1	validated	p.A127	0.000	69	0%	46	32.6%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF592	9640	genome.wustl.edu	37	15	85341940	85341940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014630.2	+1	validated	p.A953V	0.004	37	0%	18	27.8%	9	55.5%	benign(0.011)	tolerated(0.27)	neutral(0.034)	NULL
CTCF	10664	genome.wustl.edu	37	16	67654646	67654646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.P378L	1.000	231	0%	254	28.7%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
RFWD3	55159	genome.wustl.edu	37	16	74694858	74694858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018124.3	-1	validated	p.G164R	0.457	97	0%	142	27.5%	1	0%	benign(0.041)	tolerated(0.22)	neutral(0.045)	NULL
SLC25A39	51629	genome.wustl.edu	37	17	42398525	42398525	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143780.1	-1	validated	p.E198fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
MAP3K14	9020	genome.wustl.edu	37	17	43344806	43344806	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344686	-1	known	p.V764L	0.431	12	0%	10	40%	3	33.3%	benign(0)	tolerated(1)	-	NULL
ENSG00000188755	0	genome.wustl.edu	37	17	60351235	60351235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339120	-1	known	p.R27Q	0.180	165	0%	71	32.4%	0	-	benign(0.09)	tolerated(0.25)	neutral(0.043)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67215691	67215691	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080282.3	-1	reviewed	p.A175	0.998	173	0%	158	27.2%	0	-	-	-	-	NULL
TUBB4A	10382	genome.wustl.edu	37	19	6495585	6495585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006087.2	-1	provisional	p.R309C	1.000	145	0%	148	29.1%	0	-	probably_damaging(1)	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
CACNA1A	773	genome.wustl.edu	37	19	13428040	13428040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.R481C	1.000	92	0%	82	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
WIZ	58525	genome.wustl.edu	37	19	15537900	15537900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.R325Q	1.000	50	0%	17	29.4%	4	25%	unknown(0)	tolerated(0.16)	-	NULL
LOC388514	388514	genome.wustl.edu	37	19	15871673	15871673	+	RNA	SNP	C	C	T	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017598.3	-1	model	NULL	0.000	236	0%	176	30.7%	0	-	-	-	-	-
ZNF229	7772	genome.wustl.edu	37	19	44933253	44933253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014518.2	-1	validated	p.G568V	0.816	200	0%	200	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
PLEKHA4	57664	genome.wustl.edu	37	19	49370850	49370850	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020904.2	-1	validated	p.L10V	1.000	13	0%	14	50%	19	26.3%	possibly_damaging(0.938)	tolerated(0.68)	neutral(0.386)	NULL
ZNF337	26152	genome.wustl.edu	37	20	25657467	25657467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015655.2	-1	validated	p.E153Q	0.000	487	0%	323	26.9%	3	33.3%	possibly_damaging(0.497)	tolerated(0.43)	neutral(0.180)	NULL
PCK1	5105	genome.wustl.edu	37	20	56139404	56139404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MC-01	TCGA-BG-A0MC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002591.3	+1	reviewed	p.V381I	0.720	79	0%	78	33.3%	5	60%	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_PEPCK,superfamily_SSF53795
