Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27100943	27100943	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.Q1409*	1.000	40	0%	39	33.3%	-	-	-	-	-	NULL
INADL	10207	genome.wustl.edu	37	1	62253616	62253616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.P347R	0.992	74	0%	49	55.1%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_PDZ domain-like
KCND3	3752	genome.wustl.edu	37	1	112524649	112524649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004980.3	-1	reviewed	p.V234I	1.000	19	0%	36	16.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NTRK1	4914	genome.wustl.edu	37	1	156843599	156843599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002529.3	+1	reviewed	p.R342Q	0.019	63	0%	73	24.7%	-	-	benign(0.421)	tolerated(0.31)	neutral(0.164)	superfamily_Immunoglobulin
ZBTB37	84614	genome.wustl.edu	37	1	173839915	173839915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122770.1	+1	provisional	p.I184M	0.934	88	0%	84	44%	-	-	possibly_damaging(0.631)	deleterious(0.02)	deleterious(0.604)	NULL
NUCKS1	64710	genome.wustl.edu	37	1	205698749	205698749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022731.3	-1	validated	p.R6S	1.000	96	0%	93	43%	-	-	unknown(0)	deleterious(0)	-	NULL
CR1	1378	genome.wustl.edu	37	1	207796353	207796353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000651.4	+1	reviewed	p.T2431M	0.000	434	0%	293	20.1%	-	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
VASH2	79805	genome.wustl.edu	37	1	213139111	213139111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136474.1	+1	validated	p.P73Q	1.000	151	0%	218	42.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MARK1	4139	genome.wustl.edu	37	1	220808767	220808767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018650.3	+1	validated	p.R391Q	1.000	179	0%	134	47.8%	-	-	probably_damaging(0.96)	tolerated(0.21)	neutral(0.447)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228467065	228467065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R2439L	0.034	39	0%	35	42.9%	-	-	benign(0.016)	-	-	superfamily_Immunoglobulin
OTOF	9381	genome.wustl.edu	37	2	26700144	26700144	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.Q807*	0.998	31	0%	44	29.5%	-	-	-	-	-	NULL
MAP2	4133	genome.wustl.edu	37	2	210560807	210560807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002374.3	+1	reviewed	p.G1305W	0.825	102	0%	67	59.7%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_MAP2_projctn
ZNF142	7701	genome.wustl.edu	37	2	219503327	219503327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.R1600H	0.998	93	0%	104	48.1%	-	-	probably_damaging(0.985)	tolerated(0.15)	deleterious(0.673)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANO7	50636	genome.wustl.edu	37	2	242148821	242148821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001891.3	+1	validated	p.C454Y	1.000	24	0%	46	43.5%	-	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	NULL
GRM7	2917	genome.wustl.edu	37	3	6903318	6903318	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.A81	0.999	25	0%	15	53.3%	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
ITIH1	3697	genome.wustl.edu	37	3	52818359	52818359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002215.2	+1	reviewed	p.R425W	0.528	90	0%	108	35.2%	-	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ATR	545	genome.wustl.edu	37	3	142278180	142278180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.S549G	0.436	163	0%	245	25.7%	-	-	possibly_damaging(0.797)	tolerated(0.12)	deleterious(0.560)	superfamily_ARM repeat
MYNN	55892	genome.wustl.edu	37	3	169496818	169496818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018657.3	+1	provisional	p.S177P	0.672	96	0%	117	35%	-	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
FGFR3	2261	genome.wustl.edu	37	4	1808929	1808929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000481110	+1	known	p.R765C	0.085	31	0%	15	60%	-	-	unknown(0)	-	-	HMMSmart_SM00220
SH3TC1	54436	genome.wustl.edu	37	4	8230303	8230304	+	In_Frame_Ins	INS	-	-	GGCCCAGCAGGGCAG	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018986.3	+1	validated	p.965in_frame_insGRAQQ	0.000:0.000	-	-	-	-	-	-	-	-	-	superfamily_TPR-like
PROM1	8842	genome.wustl.edu	37	4	15995679	15995679	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006017.2	-1	reviewed	p.N566	0.395	304	0%	216	54.6%	-	-	-	-	-	HMMPfam_Prominin
PTTG2	10744	genome.wustl.edu	37	4	37962600	37962600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006607.2	+1	validated	p.S182F	0.005	290	0%	197	34.5%	-	-	benign(0.347)	deleterious(0)	deleterious(0.554)	HMMPfam_Securin
KIT	3815	genome.wustl.edu	37	4	55561763	55561763	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000222.2	+1	reviewed	p.G51	0.016	198	0%	129	33.3%	-	-	-	-	-	superfamily_SSF48726
EPHA5	2044	genome.wustl.edu	37	4	66467434	66467434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.E279K	1.000	114	0%	53	64.2%	-	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	PatternScan_RECEPTOR_TYR_KIN_V_2
CXCL5	6374	genome.wustl.edu	37	4	74864043	74864043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002994.3	-1	reviewed	p.A41V	0.000	91	0%	87	21.8%	-	-	benign(0.235)	deleterious(0.03)	neutral(0.388)	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines
PTPN13	5783	genome.wustl.edu	37	4	87679463	87679463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.T1092A	1.000	155	0%	53	28.3%	-	-	benign(0.407)	deleterious(0.02)	deleterious(0.514)	superfamily_PDZ
ANKRD50	57182	genome.wustl.edu	37	4	125593026	125593026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.A469V	0.999	99	0%	28	67.9%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
FAT4	79633	genome.wustl.edu	37	4	126411905	126411905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.R4643H	1.000	151	0.7%	113	32.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRDM9	56979	genome.wustl.edu	37	5	23526586	23526586	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.L463	0.000	150	0%	110	29.1%	-	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32090567	32090567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.R2338Q	1.000	39	0%	64	70.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX29	54505	genome.wustl.edu	37	5	54565263	54565263	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019030.2	-1	validated	p.I1091K	1.000	150	0%	65	30.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HA2,superfamily_SSF52540
PCDHA2	56146	genome.wustl.edu	37	5	140175680	140175680	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018905.2	+1	reviewed	p.R377	0.052	70	0%	73	27.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB14	56122	genome.wustl.edu	37	5	140604151	140604151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018934.2	+1	reviewed	p.E358D	1.000	96	0%	130	30%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin
RNF145	153830	genome.wustl.edu	37	5	158634775	158634775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144726.1	-1	provisional	p.L11F	0.800	316	0%	305	29.2%	-	-	benign(0)	-	-	NULL
RNF145	153830	genome.wustl.edu	37	5	158634776	158634776	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144726.1	-1	provisional	p.L11*	0.802	319	0%	305	29.2%	-	-	-	-	-	NULL
GABRA6	2559	genome.wustl.edu	37	5	161116772	161116772	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000811.2	+1	reviewed	p.I220M	0.797	115	0%	55	34.5%	-	-	possibly_damaging(0.818)	deleterious(0.01)	deleterious(0.715)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
POU3F2	5454	genome.wustl.edu	37	6	99283169	99283170	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005604.2	+1	validated	p.Q140fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PPIL4	85313	genome.wustl.edu	37	6	149855846	149855846	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139126.2	-1	reviewed	p.R177*	1.000	199	0%	169	30.2%	-	-	-	-	-	NULL
ZNF713	349075	genome.wustl.edu	37	7	56007596	56007596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182633.1	+1	provisional	p.S397N	0.117	36	0%	70	25.7%	-	-	probably_damaging(0.957)	tolerated(0.94)	neutral(0.401)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FBXO24	26261	genome.wustl.edu	37	7	100190467	100190467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	p.R207Q	1.000	121	0%	119	29.4%	-	-	probably_damaging(0.968)	tolerated(0.41)	neutral(0.425)	NULL
HIPK2	28996	genome.wustl.edu	37	7	139281634	139281634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000263551	-1	known	p.P849L	1.000	75	0%	88	21.6%	-	-	benign(0.004)	tolerated(0.16)	neutral(0.059)	NULL
CNTNAP2	26047	genome.wustl.edu	37	7	146829379	146829379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.V376I	1.000	167	0%	52	21.2%	-	-	benign(0.351)	tolerated(0.54)	neutral(0.118)	superfamily_Concanavalin A-like lectins/glucanases
NOS3	4846	genome.wustl.edu	37	7	150698965	150698965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000603.4	+1	reviewed	p.A520V	0.999	23	0%	29	41.4%	-	-	benign(0.183)	tolerated(0.21)	neutral(0.061)	superfamily_Flavoproteins
WWP1	11059	genome.wustl.edu	37	8	87393753	87393753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007013.3	+1	validated	p.T77A	0.527	98	0%	125	54.4%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RGS22	26166	genome.wustl.edu	37	8	100990290	100990290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.G1125V	1.000	66	0%	91	27.5%	-	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
CSMD3	114788	genome.wustl.edu	37	8	113331092	113331092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.M2445T	1.000	174	0%	58	51.7%	-	-	possibly_damaging(0.9)	deleterious(0.02)	deleterious(0.740)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113563032	113563032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.N1478H	1.000	102	0%	23	47.8%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZNF7	7553	genome.wustl.edu	37	8	146067573	146067573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003416.2	+1	validated	p.P361T	0.994	61	0%	90	26.7%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_SSF57667
HNRNPF	3185	genome.wustl.edu	37	10	43882716	43882716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098204.1	-1	reviewed	p.R206Q	1.000	72	0%	88	39.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ANXA8L2	244	genome.wustl.edu	37	10	47756086	47756086	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001630.2	+1	reviewed	p.D182	1.000	234	0%	307	35.8%	-	-	-	-	-	superfamily_Annexin,HMMPfam_Annexin
PTEN	5728	genome.wustl.edu	37	10	89692774	89692774	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Q87fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692776	89692776	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Q87P	1.000	191	0%	115	38.3%	-	-	benign(0.172)	tolerated(0.27)	neutral(0.049)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89712016	89712019	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	AGTA	AGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.N212fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
MRGPRX3	117195	genome.wustl.edu	37	11	18159108	18159108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054031.3	+1	reviewed	p.R120H	1.000	230	0%	180	53.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
CD82	3732	genome.wustl.edu	37	11	44626624	44626624	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002231.3	+1	reviewed	p.S51	0.016	85	0%	91	31.9%	-	-	-	-	-	HMMPfam_Tetraspannin
MIR130A	406919	genome.wustl.edu	37	11	57408752	57408752	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385274	+1	known	NULL	0.005	88	0%	90	36.7%	-	-	-	-	-	-
VPS11	55823	genome.wustl.edu	37	11	118949917	118949918	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.S782fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KCNA1	3736	genome.wustl.edu	37	12	5020637	5020637	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000217.2	+1	reviewed	p.D31	0.515	27	0%	19	31.6%	-	-	-	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40671965	40671965	+	Silent	SNP	A	A	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.R715	0.848	248	0%	141	18.4%	-	-	-	-	-	NULL
PLEKHA8P1	51054	genome.wustl.edu	37	12	45567898	45567898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015899.1	-1	provisional	p.M84K	0.989	357	0%	275	57.5%	-	-	-	-	-	NULL
KRT80	144501	genome.wustl.edu	37	12	52567476	52567476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182507.2	-1	reviewed	p.D247N	0.998	18	0%	26	30.8%	-	-	probably_damaging(0.998)	tolerated(0.4)	deleterious(0.490)	HMMPfam_Filament
OR6C1	390321	genome.wustl.edu	37	12	55714897	55714897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005182.1	+1	provisional	p.I172V	0.416	164	0%	58	48.3%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BAZ2A	11176	genome.wustl.edu	37	12	56998974	56998974	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013449.3	-1	validated	p.L879	0.993	80	0%	72	56.9%	-	-	-	-	-	HMMPfam_DDT,HMMSmart_SM00571
LRRIQ1	84125	genome.wustl.edu	37	12	85518131	85518131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.A1281T	0.039	85	0%	49	59.2%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
MYBPC1	4604	genome.wustl.edu	37	12	102040659	102040659	+	Missense_Mutation	SNP	G	G	A	rs190129005	by1000genomes	TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.V362I	1.000	153	0%	132	23.5%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RXFP2	122042	genome.wustl.edu	37	13	32313752	32313752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130806.3	+1	reviewed	p.M1I	0.000	299	0%	96	28.1%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
ITGA11	22801	genome.wustl.edu	37	15	68650900	68650900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004439.1	-1	reviewed	p.V166I	0.767	167	0%	108	12%	-	-	benign(0.015)	tolerated(0.07)	neutral(0.320)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ROGDI	79641	genome.wustl.edu	37	16	4848647	4848647	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024589.1	-1	provisional	p.Q152*	1.000	67	0%	112	49.1%	-	-	-	-	-	HMMPfam_Rogdi_lz
ABAT	18	genome.wustl.edu	37	16	8862739	8862739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000663.4	+1	reviewed	p.D242V	1.000	82	0%	111	22.5%	-	-	benign(0.334)	deleterious(0.02)	deleterious(0.488)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
SMG1	23049	genome.wustl.edu	37	16	18866018	18866018	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.P1481	0.998	151	0%	184	45.1%	-	-	-	-	-	superfamily_ARM repeat
ZNF469	84627	genome.wustl.edu	37	16	88502965	88502965	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127464.1	+1	reviewed	p.D3001	0.000	16	0%	13	53.8%	-	-	-	-	-	NULL
ACAP1	9744	genome.wustl.edu	37	17	7252365	7252365	+	Missense_Mutation	SNP	G	G	A	rs192044976	by1000genomes	TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014716.3	+1	validated	p.R577Q	1.000	84	0%	122	87.7%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TP53	7157	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R248Q	1.000	100	0%	122	88.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
MYO1D	4642	genome.wustl.edu	37	17	31107648	31107648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015194.1	-1	provisional	p.A84T	1.000	171	0%	136	41.2%	-	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
HIGD1B	51751	genome.wustl.edu	37	17	42925565	42925565	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016438.2	+1	provisional	p.D15	0.358	83	0%	127	20.5%	-	-	-	-	-	HMMPfam_HIG_1_N
ZBTB7C	201501	genome.wustl.edu	37	18	45567247	45567247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039360.1	-1	validated	p.D78N	1.000	174	0%	226	22.1%	-	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KRI1	65095	genome.wustl.edu	37	19	10670340	10670340	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023008.3	-1	validated	p.K330	1.000	198	0%	416	13.9%	-	-	-	-	-	NULL
ZNF792	126375	genome.wustl.edu	37	19	35449397	35449397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175872.4	-1	validated	p.E454D	0.030	119	0%	150	19.3%	-	-	possibly_damaging(0.849)	tolerated(0.1)	deleterious(0.613)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CIC	23152	genome.wustl.edu	37	19	42798378	42798378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015125.3	+1	validated	p.R1417C	1.000	54	0%	109	41.3%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3127732	3127732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.A662G	0.143	42	0%	52	53.8%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
C20orf152	140894	genome.wustl.edu	37	20	34572558	34572558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080834.1	+1	predicted	p.V192I	0.921	177	0%	225	15.6%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
KRTAP10-5	386680	genome.wustl.edu	37	21	46000080	46000080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198694.2	-1	reviewed	p.C126R	0.149	231	0%	284	23.9%	-	-	unknown(0)	tolerated(0.09)	-	NULL
ITGB2	3689	genome.wustl.edu	37	21	46306688	46306688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.R737H	0.997	49	0%	59	50.8%	-	-	benign(0.303)	deleterious(0.02)	deleterious(0.477)	HMMPfam_Integrin_b_cyt
MEI1	150365	genome.wustl.edu	37	22	42172114	42172114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152513.3	+1	validated	p.I851M	1.000	161	0%	166	20.5%	-	-	possibly_damaging(0.577)	deleterious(0.01)	deleterious(0.604)	NULL
PLXNB2	23654	genome.wustl.edu	37	22	50720089	50720089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.T1143M	0.988	23	0%	29	72.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	2702	2702	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	14	0%	21	81%	-	-	-	-	-	-
ENSG00000198888	0	genome.wustl.edu	37	MT	3535	3535	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.L77	NULL	3	0.000	9	1.000	-	-	-	-	-	HMMPfam_NADHdh
FAM9A	171482	genome.wustl.edu	37	X	8763373	8763373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174951.3	-1	validated	p.E193K	0.005	286	0%	249	30.1%	-	-	unknown(0)	-	-	NULL
OTUD6A	139562	genome.wustl.edu	37	X	69283005	69283005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207320.1	+1	provisional	p.V211M	0.030	37	0%	35	31.4%	-	-	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	HMMPfam_OTU,superfamily_SSF54001
MAGEC2	51438	genome.wustl.edu	37	X	141291033	141291033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0YV-01	TCGA-BG-A0YV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016249.3	-1	reviewed	p.E247D	0.004	156	0%	139	31.7%	-	-	possibly_damaging(0.685)	tolerated(0.08)	deleterious(0.544)	HMMPfam_MAGE
