Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
FAM132A	388581	genome.wustl.edu	37	1	1179361	1179361	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014980.1	-1	provisional	p.T168	0.532	5	0.000	15	0.333	1	0%	-	-	-	NULL
CPSF3L	54973	genome.wustl.edu	37	1	1250899	1250899	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017871.4	-1	validated	e5+1	1.000	119	0%	139	43.2%	11	63.6%	-	-	-	-
DNAJC11	55735	genome.wustl.edu	37	1	6712895	6712895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.W208C	1.000	268	0%	191	43.5%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1orf187	374946	genome.wustl.edu	37	1	11769428	11769428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198545.3	+1	validated	p.S183N	1.000	98	0%	89	37.1%	0	-	probably_damaging(0.959)	tolerated(0.2)	neutral(0.452)	NULL
PDPN	10630	genome.wustl.edu	37	1	13933760	13933760	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006474.4	+1	reviewed	p.G130*	0.001	127	0%	100	51%	7	0%	-	-	-	HMMPfam_Podoplanin
MST1P9	11223	genome.wustl.edu	37	1	17086085	17086086	+	RNA	INS	-	-	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002729.2	-1	validated	NULL	0.998:0.997	-	-	-	-	-	-	-	-	-	-
PLA2G2F	64600	genome.wustl.edu	37	1	20471142	20471142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022819.3	+1	validated	p.H128Q	0.960	81	0%	76	39.5%	0	-	benign(0.362)	tolerated(0.21)	neutral(0.159)	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
EPHA8	2046	genome.wustl.edu	37	1	22903062	22903062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020526.3	+1	reviewed	p.R171H	0.999	47	0%	49	38.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
ARID1A	8289	genome.wustl.edu	37	1	27057961	27057961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.Q557*	1.000	288	0%	273	45.4%	5	60%	-	-	-	NULL
WDTC1	23038	genome.wustl.edu	37	1	27589701	27589701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015023.3	+1	validated	p.R36Q	0.996	93	0%	79	36.7%	12	58.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00320
GPR3	2827	genome.wustl.edu	37	1	27720774	27720774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005281.2	+1	provisional	p.A158S	1.000	165	0%	166	44%	0	-	benign(0.045)	tolerated(0.51)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
B4GALT2	8704	genome.wustl.edu	37	1	44451218	44451218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005417.1	+1	reviewed	p.R298H	1.000	107	0%	98	39.8%	114	56.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
SSBP3	23648	genome.wustl.edu	37	1	54707175	54707175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145716.2	-1	validated	p.Y258C	1.000	159	0%	149	51.7%	67	28.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SSDP
C1orf168	199920	genome.wustl.edu	37	1	57216870	57216870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004303.4	-1	validated	p.A412T	0.001	187	0%	176	52.3%	2	50%	possibly_damaging(0.832)	tolerated(0.16)	neutral(0.377)	NULL
PTGFR	5737	genome.wustl.edu	37	1	78963629	78963629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039585.1	+1	reviewed	p.R290M	0.000	281	0%	269	43.9%	0	-	unknown(0)	-	-	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94668248	94668248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004815.3	-1	validated	p.C332Y	1.000	366	0%	336	42.9%	1	0%	benign(0.005)	tolerated(1)	-	NULL
AMIGO1	57463	genome.wustl.edu	37	1	110051211	110051211	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020703.2	-1	validated	p.P108	0.002	187	0%	181	45.3%	0	-	-	-	-	HMMSmart_LRR_TYP,superfamily_SSF52058
MOV10	4343	genome.wustl.edu	37	1	113217559	113217559	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130079.1	+1	validated	p.Q9*	1.000	35	0%	24	54.2%	1	100%	-	-	-	NULL
CD160	11126	genome.wustl.edu	37	1	145704046	145704046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007053.2	-1	validated	p.Q124R	0.873	38	0%	58	53.4%	0	-	probably_damaging(0.957)	tolerated(0.31)	neutral(0.428)	NULL
HIST2H2AC	8338	genome.wustl.edu	37	1	149858869	149858870	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003517.2	+1	reviewed	p.L116fs	0.957:0.996	-	-	-	-	-	-	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
POGZ	23126	genome.wustl.edu	37	1	151397495	151397495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.R374Q	1.000	149	0%	137	47.4%	9	77.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_C2H2 and C2HC zinc fingers
TCHH	7062	genome.wustl.edu	37	1	152081442	152081442	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.R1417	0.016	261	0.8%	212	42%	0	-	-	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152081705	152081705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.R1330C	0.000	197	0%	211	48.8%	0	-	unknown(0)	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152192121	152192121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.R662C	0.000	238	0%	263	40.7%	0	-	unknown(0)	-	-	NULL
FAM189B	10712	genome.wustl.edu	37	1	155218265	155218265	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006589.2	-1	validated	e10-1	1.000	372	0%	303	45.5%	0	-	-	-	-	-
SMG5	23381	genome.wustl.edu	37	1	156238080	156238080	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015327.2	-1	validated	e8+1	1.000	377	0%	396	49.5%	2	100%	-	-	-	-
IGSF9	57549	genome.wustl.edu	37	1	159900547	159900547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.S583N	1.000	43	0%	50	16%	16	6.2%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ATP1A4	480	genome.wustl.edu	37	1	160141394	160141394	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.L567	0.999	213	0%	198	39.4%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
CD84	8832	genome.wustl.edu	37	1	160519728	160519728	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368051	-1	known	p.R268*	0.186	158	0.6%	164	44.5%	0	-	-	-	-	NULL
ALDH9A1	223	genome.wustl.edu	37	1	165649814	165649814	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000696.3	-1	reviewed	p.V233	1.000	64	0%	54	48.1%	59	35.5%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
FAM5B	57795	genome.wustl.edu	37	1	177250475	177250475	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021165.2	+1	provisional	p.I721	0.999	95	0%	103	42.7%	0	-	-	-	-	NULL
KIAA1614	57710	genome.wustl.edu	37	1	180885602	180885602	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.G121	0.000	68	0%	61	45.9%	0	-	-	-	-	NULL
SWT1	54823	genome.wustl.edu	37	1	185143815	185143816	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105518.1	+1	validated	p.K182fs	0.936:0.183	-	-	-	-	-	-	-	-	-	NULL
CFHR2	3080	genome.wustl.edu	37	1	196918738	196918738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005666.2	+1	validated	p.T71M	0.000	377	0%	325	36.6%	0	-	possibly_damaging(0.912)	tolerated(0.08)	deleterious(0.663)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
GPR37L1	9283	genome.wustl.edu	37	1	202097567	202097567	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004767.3	+1	validated	p.S443	0.000	56	0%	68	29.4%	0	-	-	-	-	NULL
PPFIA4	8497	genome.wustl.edu	37	1	203024597	203024597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015053.1	+1	validated	p.A117T	0.992	100	0%	102	40.2%	5	20%	possibly_damaging(0.89)	deleterious(0)	deleterious(0.794)	NULL
LAX1	54900	genome.wustl.edu	37	1	203740521	203740521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017773.3	+1	validated	p.V76I	0.001	159	0%	134	49.3%	1	100%	benign(0.039)	tolerated(0.8)	neutral(0.003)	NULL
PIGR	5284	genome.wustl.edu	37	1	207109015	207109015	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002644.3	-1	reviewed	p.L398	0.748	34	0%	32	37.5%	57	42.1%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
C1orf116	79098	genome.wustl.edu	37	1	207195412	207195412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023938.5	-1	validated	p.R566H	0.604	75	0%	70	42.9%	2	50%	benign(0.041)	tolerated(0.35)	neutral(0.023)	NULL
TMEM63A	9725	genome.wustl.edu	37	1	226044713	226044713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014698.2	-1	validated	p.P461L	1.000	146	0%	143	47.6%	144	57.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF221
LIN9	286826	genome.wustl.edu	37	1	226453982	226453982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173083.2	-1	provisional	p.R306W	1.000	324	0%	288	47.6%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM67	440730	genome.wustl.edu	37	1	231344710	231344710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004342.3	+1	validated	p.D613N	1.000	80	0%	78	46.2%	0	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	superfamily_Concanavalin A-like lectins/glucanases
LYST	1130	genome.wustl.edu	37	1	235920622	235920622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.V2340I	0.985	342	0%	236	43.6%	1	0%	possibly_damaging(0.934)	-	-	NULL
GPR113	165082	genome.wustl.edu	37	2	26534622	26534622	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145168.1	-1	validated	p.V658	0.987	91	0%	94	48.9%	0	-	-	-	-	NULL
CAD	790	genome.wustl.edu	37	2	27449066	27449066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.S637N	1.000	174	0%	187	41.7%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
SPRED2	200734	genome.wustl.edu	37	2	65561814	65561814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181784.2	-1	validated	p.L100F	1.000	246	0%	181	40.3%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
PNO1	56902	genome.wustl.edu	37	2	68389401	68389401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020143.2	+1	provisional	p.A149V	1.000	389	0%	366	42.3%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152236046	152236048	+	In_Frame_Del	DEL	AAA	AAA	-	rs71403164	byCluster	TCGA-BG-A18B-01	TCGA-BG-A18B-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	p.*278in_frame_del	0.961:0.953	-	-	-	-	-	-	-	-	-	NULL
PKP4	8502	genome.wustl.edu	37	2	159481462	159481462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.I226L	1.000	179	0%	191	55.5%	13	38.4%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
DYNC1I2	1781	genome.wustl.edu	37	2	172546703	172546703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001378.1	+1	provisional	p.R13H	1.000	257	0%	171	48.5%	34	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYNC1I2	1781	genome.wustl.edu	37	2	172563806	172563806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001378.1	+1	provisional	p.P85L	1.000	267	0%	237	42.2%	47	40.4%	benign(0.406)	deleterious(0.04)	deleterious(0.479)	NULL
RAPGEF4	11069	genome.wustl.edu	37	2	173853440	173853440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.H416R	1.000	120	0%	135	46.7%	2	100%	probably_damaging(1)	tolerated(0.46)	deleterious(0.512)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
MTX2	10651	genome.wustl.edu	37	2	177193631	177193631	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006554.4	+1	reviewed	p.T136	1.000	406	0%	316	42.4%	121	46.2%	-	-	-	superfamily_GST_C_like,HMMPfam_Tom37
FZD7	8324	genome.wustl.edu	37	2	202900316	202900316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003507.1	+1	reviewed	p.V316M	1.000	36	0%	37	43.2%	0	-	benign(0.002)	tolerated(0.24)	neutral(0.037)	HMMPfam_Frizzled
TTLL4	9654	genome.wustl.edu	37	2	219602910	219602910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014640.4	+1	validated	p.A171T	0.332	74	0%	69	46.4%	0	-	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	NULL
FAM134A	79137	genome.wustl.edu	37	2	220047058	220047058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024293.4	+1	validated	p.G447S	0.976	81	0%	117	33.3%	125	32.8%	benign(0)	tolerated(1)	-	NULL
ASIC4	55515	genome.wustl.edu	37	2	220396552	220396552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018674.4	+1	reviewed	p.G346S	1.000	47	0%	31	38.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ASC
PID1	55022	genome.wustl.edu	37	2	229890504	229890504	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017933.4	-1	validated	p.A197	0.970	111	0%	159	46.5%	0	-	-	-	-	superfamily_SSF50729
SP140	11262	genome.wustl.edu	37	2	231159016	231159016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	p.R667C	0.002	299	0%	244	43.9%	0	-	benign(0.09)	deleterious(0.04)	neutral(0.355)	superfamily_SAND domain-like
GIGYF2	26058	genome.wustl.edu	37	2	233708929	233708929	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.Q1042	0.999	87	0%	85	54.1%	22	59%	unknown(0)	-	-	NULL
OR6B2	389090	genome.wustl.edu	37	2	240969689	240969689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005853.1	-1	provisional	p.T53I	0.000	235	0%	230	38.3%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AGXT	189	genome.wustl.edu	37	2	241818207	241818207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000030.2	+1	reviewed	p.A383V	1.000	20	0%	29	44.8%	0	-	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	superfamily_PLP-dependent transferases
PASK	23178	genome.wustl.edu	37	2	242063393	242063393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.A959T	0.069	74	0%	97	34%	7	14.2%	benign(0.143)	tolerated(0.38)	neutral(0.030)	NULL
PASK	23178	genome.wustl.edu	37	2	242066758	242066758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.S524R	0.000	57	0%	91	41.8%	6	50%	benign(0.147)	deleterious(0.01)	neutral(0.419)	NULL
GRIP2	80852	genome.wustl.edu	37	3	14545084	14545084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080423.1	-1	provisional	p.R988M	1.000	55	0%	44	52.3%	0	-	-	-	-	NULL
NGLY1	55768	genome.wustl.edu	37	3	25777495	25777495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018297.3	-1	reviewed	p.E383D	1.000	197	0%	149	32.9%	15	0%	probably_damaging(0.979)	tolerated(0.2)	deleterious(0.471)	superfamily_Cysteine proteinases
RPL14	9045	genome.wustl.edu	37	3	40503520	40503521	+	In_Frame_Ins	INS	-	-	CTG	rs61749576	byFrequency	TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034996.1	+1	reviewed	p.153in_frame_insA	0.019:0.022	-	-	-	-	-	-	-	-	-	NULL
DZIP3	9666	genome.wustl.edu	37	3	108381042	108381042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014648.3	+1	validated	p.K787N	1.000	220	0%	204	34.8%	11	27.2%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
KY	339855	genome.wustl.edu	37	3	134322879	134322879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178554.4	-1	validated	p.R510C	1.000	66	0%	83	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ESYT3	83850	genome.wustl.edu	37	3	138191325	138191325	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031913.3	+1	validated	p.E621*	0.001	133	0%	131	51.9%	0	-	-	-	-	NULL
GRK7	131890	genome.wustl.edu	37	3	141497445	141497445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139209.2	+1	reviewed	p.Q107*	0.018	9	0.000	17	0.471	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
PIK3CA	5290	genome.wustl.edu	37	3	178928297	178928297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H495Y	1.000	243	0%	269	48%	4	75%	benign(0)	tolerated(0.89)	-	NULL
RTP4	64108	genome.wustl.edu	37	3	187086321	187086321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022147.2	+1	validated	p.G31D	0.009	181	0%	144	44.4%	1	0%	benign(0.174)	tolerated(0.68)	neutral(0.018)	NULL
MUC4	4585	genome.wustl.edu	37	3	195512122	195512122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.A2110V	0.797	1446	0%	1265	16.1%	0	-	possibly_damaging(0.748)	-	-	NULL
LMLN	89782	genome.wustl.edu	37	3	197765764	197765783	+	RNA	DEL	CCAACCACCTCGTCAGCAAC	CCAACCACCTCGTCAGCAAC	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	CCAACCACCTCGTCAGCAAC	CCAACCACCTCGTCAGCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026786.1	+1	reviewed	NULL	0.971:0.959:0.901:0.867:0.858:0.787:0.708:0.651:0.287:0.226:0.185:0.169:0.950:0.966:0.978:0.992:0.994:0.996:0.996:0.994	-	-	-	-	-	-	-	-	-	-
SLC26A1	10861	genome.wustl.edu	37	4	982726	982726	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022042.2	-1	reviewed	p.P667	0.002	24	0%	28	42.9%	1	100%	-	-	-	HMMPfam_STAS,superfamily_STAS
AFAP1	60312	genome.wustl.edu	37	4	7774681	7774681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134647.1	-1	reviewed	p.R707W	0.993	58	0%	67	44.8%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
KLHL8	57563	genome.wustl.edu	37	4	88104381	88104381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020803.3	-1	validated	p.R309Q	1.000	314	0%	267	47.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose oxidase central domain
NDST4	64579	genome.wustl.edu	37	4	115792022	115792022	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022569.1	-1	provisional	p.Q541*	1.000	312	0%	274	45.6%	0	-	-	-	-	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141578311	141578311	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.S759	0.191	366	0.3%	304	40.5%	12	41.6%	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
FREM3	166752	genome.wustl.edu	37	4	144621353	144621353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329798	-1	known	p.A159V	0.678	19	0%	17	47.1%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
TTC29	83894	genome.wustl.edu	37	4	147830370	147830370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031956.2	-1	validated	p.V70M	1.000	100	0%	116	44.8%	9	66.6%	possibly_damaging(0.731)	tolerated(0.14)	deleterious(0.516)	NULL
ARHGAP10	79658	genome.wustl.edu	37	4	148886229	148886229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024605.3	+1	validated	p.L502P	1.000	213	0%	172	41.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
TRIM75	391714	genome.wustl.edu	37	4	165981667	165981667	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322402	+1	known	p.S456	0.002	114	0%	121	34.7%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
FAT1	2195	genome.wustl.edu	37	4	187517848	187517848	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512772	-1	known	p.R50*	0.061	195	0%	149	40.9%	23	17.3%	-	-	-	NULL
TRIML1	339976	genome.wustl.edu	37	4	189063480	189063480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178556.3	+1	provisional	p.E193D	0.430	140	0%	139	38.8%	0	-	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	NULL
FASTKD3	79072	genome.wustl.edu	37	5	7867808	7867808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024091.2	-1	validated	p.A130V	0.999	155	0%	161	41%	2	50%	benign(0.009)	tolerated(0.23)	neutral(0.042)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32053973	32053973	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.D628	0.996	251	0%	222	51.8%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SPEF2	79925	genome.wustl.edu	37	5	35641649	35641649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.A93V	1.000	180	0%	228	50.4%	8	50%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_DUF1042
PIK3R1	5295	genome.wustl.edu	37	5	67591106	67591106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.K567E	1.000	289	0%	311	45.7%	126	54.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MCCC2	64087	genome.wustl.edu	37	5	70900248	70900248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022132.4	+1	reviewed	p.R193C	1.000	384	0%	357	44.5%	24	58.3%	benign(0.189)	deleterious(0)	neutral(0.462)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
BHMT2	23743	genome.wustl.edu	37	5	78379053	78379053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017614.4	+1	reviewed	p.D213N	0.000	90	0%	98	46.9%	0	-	benign(0.016)	tolerated(0.72)	neutral(0.002)	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
MAN2A1	4124	genome.wustl.edu	37	5	109117235	109117235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.S505G	1.000	280	0.4%	249	43.8%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Alpha-mann_mid,superfamily_SSF88688
SNX2	6643	genome.wustl.edu	37	5	122153039	122153039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003100.2	+1	reviewed	p.S326N	1.000	382	0%	316	39.2%	81	38.2%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Vps5
MEGF10	84466	genome.wustl.edu	37	5	126771171	126771171	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032446.2	+1	validated	p.D698	1.000	236	0%	185	40%	0	-	-	-	-	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
PCDHA11	56138	genome.wustl.edu	37	5	140250348	140250348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.V554M	0.997	44	0%	42	52.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA4	56111	genome.wustl.edu	37	5	140735405	140735405	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.T213fs	0.997	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DOCK2	1794	genome.wustl.edu	37	5	169468087	169468087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004946.2	+1	validated	p.L1232M	0.997	201	0%	225	46.2%	3	0%	possibly_damaging(0.531)	tolerated(0.26)	neutral(0.213)	NULL
C5orf25	375484	genome.wustl.edu	37	5	175716731	175716731	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420396	+1	known	p.T49	0.604	271	0%	251	45%	1	0%	-	-	-	NULL
ARL10	285598	genome.wustl.edu	37	5	175793474	175793474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173664.4	+1	validated	p.T92M	0.977	47	0%	45	55.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arf,superfamily_SSF52540
NSD1	64324	genome.wustl.edu	37	5	176720989	176720989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.P2207H	1.000	113	0%	136	45.6%	13	69.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000170089	0	genome.wustl.edu	37	5	177309754	177309754	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000303154	+1	known	NULL	1.000	246	0%	263	21.3%	11	36.3%	-	-	-	-
PRPF4B	8899	genome.wustl.edu	37	6	4042759	4042759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.A536V	1.000	331	0%	259	38.6%	12	33.3%	unknown(0)	tolerated(0.07)	-	NULL
RREB1	6239	genome.wustl.edu	37	6	7246811	7246811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274670	+1	known	p.R1173Q	0.000	23	0%	13	53.8%	19	52.6%	-	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12161723	12161723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.S2180F	1.000	108	0%	85	47.1%	8	62.5%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
TRIM38	10475	genome.wustl.edu	37	6	25967119	25967119	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006355.2	+1	reviewed	p.G123	0.048	34	0%	44	54.5%	9	44.4%	-	-	-	HMMPfam_zf-B_box,HMMSmart_BBOX
HIST1H4F	8361	genome.wustl.edu	37	6	26240939	26240939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003540.3	+1	reviewed	p.R96C	1.000	99	0%	96	39.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Histone-fold
DAAM2	23500	genome.wustl.edu	37	6	39864593	39864593	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015345.2	+1	validated	p.L783	1.000	23	0%	36	47.2%	0	-	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PPP2R5D	5528	genome.wustl.edu	37	6	42978373	42978373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486843	+1	known	p.P116L	0.001	232	0%	214	12.6%	1	100%	unknown(0)	tolerated(0.22)	-	HMMPfam_B56
IBTK	25998	genome.wustl.edu	37	6	82949978	82949978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.V76L	1.000	284	0%	250	40%	3	33.3%	possibly_damaging(0.748)	tolerated(0.05)	deleterious(0.620)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LACE1	246269	genome.wustl.edu	37	6	108676912	108676912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145315.3	+1	reviewed	p.R157K	1.000	327	0%	244	41.8%	2	0%	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_AFG1_ATPase,superfamily_SSF52540
HEY2	23493	genome.wustl.edu	37	6	126075692	126075719	+	Frame_Shift_Del	DEL	GGTAAGTAGATGACTTCATTTTTTTTTT	GGTAAGTAGATGACTTCATTTTTTTTTT	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	GGTAAGTAGATGACTTCATTTTTTTTTT	GGTAAGTAGATGACTTCATTTTTTTTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012259.2	+1	reviewed	p.G110fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_HLH_basic
THEMIS	387357	genome.wustl.edu	37	6	128150751	128150751	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010923.2	-1	reviewed	p.P193	0.994	212	0%	246	48%	1	0%	-	-	-	NULL
IFNGR1	3459	genome.wustl.edu	37	6	137519504	137519505	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000416.2	-1	reviewed	p.S378fs	0.036:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_IFNGR1
KIAA1244	57221	genome.wustl.edu	37	6	138644865	138644865	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020340.4	+1	validated	p.C1608	1.000	131	0%	124	42.7%	9	66.6%	-	-	-	NULL
EZR	7430	genome.wustl.edu	37	6	159190425	159190425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111077.1	-1	reviewed	p.A426V	0.979	86	0%	104	47.1%	236	45.7%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_ERM
AGPAT4	56895	genome.wustl.edu	37	6	161575308	161575308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020133.2	-1	reviewed	p.Y128C	0.991	103	0%	81	51.9%	15	46.6%	benign(0.108)	deleterious(0.02)	neutral(0.392)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
FERD3L	222894	genome.wustl.edu	37	7	19184847	19184847	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152898.2	-1	validated	p.R47*	0.000	21	0%	30	66.7%	0	-	-	-	-	NULL
ABCB5	340273	genome.wustl.edu	37	7	20721129	20721129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178559.5	+1	validated	p.A125V	1.000	245	0.4%	197	33.5%	1	0%	benign(0.142)	tolerated(0.24)	neutral(0.050)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
HIBADH	11112	genome.wustl.edu	37	7	27669062	27669062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152740.2	-1	validated	p.A138T	0.978	506	0%	356	35.7%	44	38.6%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains
SCRN1	9805	genome.wustl.edu	37	7	29983772	29983772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145514.1	-1	reviewed	p.T142I	1.000	190	0%	175	38.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HECW1	23072	genome.wustl.edu	37	7	43351657	43351657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.A108V	1.000	148	0%	139	36.7%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
ANKIB1	54467	genome.wustl.edu	37	7	91936716	91936716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.H78Y	1.000	35	0%	65	38.5%	7	71.4%	possibly_damaging(0.913)	tolerated(0.12)	deleterious(0.625)	superfamily_ANK
SGCE	8910	genome.wustl.edu	37	7	94229973	94229973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099401.1	-1	reviewed	p.C341Y	1.000	94	0%	91	42.9%	30	73.3%	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMPfam_Sarcoglycan_2
ZKSCAN1	7586	genome.wustl.edu	37	7	99631749	99631750	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003439.1	+1	validated	p.R543fs	0.322:0.996	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
MEPCE	56257	genome.wustl.edu	37	7	100031137	100031137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019606.4	+1	provisional	p.P677H	1.000	155	0%	129	45.7%	78	50%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_Bin3,superfamily_SSF53335
CUX1	1523	genome.wustl.edu	37	7	101882719	101882719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.R1248W	1.000	65	0%	74	36.5%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RELN	5649	genome.wustl.edu	37	7	103143535	103143535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.Q2806R	1.000	201	0%	190	46.8%	0	-	possibly_damaging(0.495)	tolerated(0.16)	neutral(0.225)	superfamily_Sialidase
NAMPT	10135	genome.wustl.edu	37	7	105891602	105891602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005746.2	-1	reviewed	p.T468I	1.000	463	0%	434	38.9%	11	27.2%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112407529	112407529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022484.4	-1	validated	p.T606I	0.998	243	0%	240	43.3%	22	63.6%	possibly_damaging(0.475)	tolerated(0.07)	deleterious(0.476)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127999678	127999678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114726.2	-1	validated	p.R123Q	0.524	25	4%	31	48.4%	0	-	possibly_damaging(0.944)	tolerated(0.39)	neutral(0.405)	NULL
IRF5	3663	genome.wustl.edu	37	7	128587312	128587312	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098629.1	+1	reviewed	p.T170	0.042	30	0%	35	42.9%	1	0%	-	-	-	NULL
TNPO3	23534	genome.wustl.edu	37	7	128633943	128633943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012470.2	-1	validated	p.D395G	1.000	268	0%	262	42.7%	12	41.6%	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	superfamily_ARM repeat
C7orf49	78996	genome.wustl.edu	37	7	134851582	134851582	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024033.2	-1	validated	p.A85	0.000	56	0%	54	48.1%	24	50%	-	-	-	NULL
TAS2R4	50832	genome.wustl.edu	37	7	141478715	141478715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016944.1	+1	reviewed	p.T143A	0.000	189	0%	242	51.2%	0	-	benign(0.055)	tolerated(0.29)	neutral(0.033)	HMMPfam_TAS2R,superfamily_SSF81321
TRBV3-1	28619	genome.wustl.edu	37	7	142008629	142008629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390387	+1	known	p.M34I	0.000	143	0%	173	42.8%	2	0%	benign(0.085)	tolerated(0.09)	neutral(0.302)	HMMPfam_V-set,superfamily_SSF48726
ZNF862	643641	genome.wustl.edu	37	7	149547316	149547316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099220.1	+1	provisional	p.E336K	1.000	552	0%	519	46.8%	3	0%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PAXIP1	22976	genome.wustl.edu	37	7	154775001	154775001	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.T122	0.014	135	0%	117	45.3%	3	100%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
UBE3C	9690	genome.wustl.edu	37	7	157046958	157046958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014671.2	+1	validated	p.Q968H	1.000	256	0%	177	40.1%	23	39.1%	benign(0.002)	tolerated(0.21)	neutral(0.044)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
DLGAP2	9228	genome.wustl.edu	37	8	1616660	1616660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.G579D	0.994	19	0%	17	47.1%	0	-	benign(0.341)	tolerated(0.11)	neutral(0.379)	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11189198	11189198	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054028.1	+1	reviewed	p.Q195*	0.378	166	0%	168	39.9%	0	-	-	-	-	NULL
BMP1	649	genome.wustl.edu	37	8	22066975	22066975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006129.4	+1	reviewed	p.R865W	0.992	74	0%	76	46.1%	10	20%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TEX15	56154	genome.wustl.edu	37	8	30703276	30703276	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.L1086	0.000	328	0%	255	42.4%	0	-	-	-	-	NULL
GOT1L1	137362	genome.wustl.edu	37	8	37794491	37794491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152413.2	-1	validated	p.M202V	0.000	326	0%	275	39.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
POTEA	340441	genome.wustl.edu	37	8	43147653	43147653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005365.2	+1	validated	p.L9P	0.000	52	0%	51	47.1%	0	-	-	-	-	NULL
RALYL	138046	genome.wustl.edu	37	8	85774589	85774589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100391.1	+1	validated	p.R171C	1.000	145	0%	135	47.4%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
TSPYL5	85453	genome.wustl.edu	37	8	98288864	98288864	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033512.2	-1	validated	p.K403	0.010	175	0%	135	42.2%	0	-	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110460447	110460447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.N1951S	0.001	203	0%	188	43.1%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CSMD3	114788	genome.wustl.edu	37	8	113585871	113585871	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.D1301H	1.000	190	0%	164	39%	0	-	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
COL22A1	169044	genome.wustl.edu	37	8	139890128	139890128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.V175M	1.000	15	0.000	9	0.778	1	0%	unknown(0)	deleterious(0.02)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TRAPPC9	83696	genome.wustl.edu	37	8	140744251	140744251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031466.5	-1	reviewed	p.V1182M	1.000	68	0%	61	42.6%	33	36.3%	possibly_damaging(0.889)	tolerated(0.1)	deleterious(0.636)	NULL
CYP11B2	1585	genome.wustl.edu	37	8	143994295	143994295	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000498.3	-1	reviewed	p.Y376	0.999	108	0%	115	43.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
PYCRL	65263	genome.wustl.edu	37	8	144687931	144687931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023078.2	-1	validated	p.A267V	0.997	31	0%	43	46.5%	15	46.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_F420_oxidored
DMRT3	58524	genome.wustl.edu	37	9	990202	990202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021240.2	+1	validated	p.A206T	0.126	54	0%	66	37.9%	0	-	benign(0.191)	tolerated(0.14)	neutral(0.268)	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37354783	37354783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032226.2	+1	validated	p.I387T	1.000	176	0%	164	45.7%	14	64.2%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79843179	79843182	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.K532fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
COL15A1	1306	genome.wustl.edu	37	9	101706499	101706499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.L23I	0.811	53	0%	51	43.1%	7	0%	possibly_damaging(0.791)	-	-	superfamily_ConA_like_lec_gl
ALDOB	229	genome.wustl.edu	37	9	104193145	104193145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000035.3	-1	reviewed	p.T9A	1.000	222	0%	201	42.3%	0	-	benign(0.048)	tolerated(0.05)	neutral(0.348)	superfamily_Aldolase
C9orf125	84302	genome.wustl.edu	37	9	104238408	104238408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032342.1	-1	provisional	p.L323M	0.972	130	0%	108	43.5%	0	-	possibly_damaging(0.95)	deleterious(0.04)	deleterious(0.742)	NULL
C9orf125	84302	genome.wustl.edu	37	9	104238630	104238630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032342.1	-1	provisional	p.E249K	1.000	50	0%	64	42.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109690781	109690781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.V1530I	1.000	57	0%	45	44.4%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899875	112899875	+	Missense_Mutation	SNP	G	G	A	rs143055704	by1000genomes	TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.G684E	0.835	112	0%	111	44.1%	1	0%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
PRPF4	9128	genome.wustl.edu	37	9	116053878	116053878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004697.3	+1	provisional	p.D503N	0.996	118	0%	125	40%	29	37.9%	possibly_damaging(0.447)	tolerated(0.13)	neutral(0.398)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PHF19	26147	genome.wustl.edu	37	9	123629233	123629233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015651.1	-1	validated	p.R209W	1.000	33	0%	36	41.7%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
SLC2A8	29988	genome.wustl.edu	37	9	130166034	130166034	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419132	+1	known	p.T157M	0.801	91	0%	76	46.1%	20	40%	-	-	-	NULL
FUBP3	8939	genome.wustl.edu	37	9	133491782	133491782	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003934.1	+1	validated	p.R149*	1.000	146	0%	146	47.3%	13	0%	-	-	-	superfamily_Eukaryotic type KH-domain (KH-domain type I)
FAM69B	138311	genome.wustl.edu	37	9	139617828	139617828	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152421.3	+1	validated	p.L300	0.482	29	0%	25	48%	38	68.4%	-	-	-	NULL
ZNF22	7570	genome.wustl.edu	37	10	45498918	45498918	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006963.4	+1	validated	p.G34	0.471	84	0%	93	28%	14	14.2%	-	-	-	NULL
CHAT	1103	genome.wustl.edu	37	10	50854705	50854705	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020549.4	+1	reviewed	p.Y422	0.841	34	0%	33	42.4%	0	-	-	-	-	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases
EGR2	1959	genome.wustl.edu	37	10	64575710	64575710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000399.3	-1	reviewed	p.P27L	1.000	158	0%	167	40.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CCAR1	55749	genome.wustl.edu	37	10	70547774	70547774	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018237.2	+1	validated	p.E991*	0.997	195	0%	225	48%	66	13.6%	-	-	-	NULL
AP3M1	26985	genome.wustl.edu	37	10	75893908	75893908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012095.4	-1	reviewed	p.G154R	1.000	148	0%	151	37.7%	12	33.3%	possibly_damaging(0.757)	deleterious(0.02)	deleterious(0.663)	NULL
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R233*	0.984	226	0%	239	87.9%	18	61.1%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PPP1R3C	5507	genome.wustl.edu	37	10	93390251	93390251	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005398.4	-1	provisional	p.H129	0.302	119	0%	142	16.2%	0	-	-	-	-	NULL
TBC1D12	23232	genome.wustl.edu	37	10	96292805	96292805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015188.1	+1	validated	p.K760N	1.000	302	0%	205	43.4%	2	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
FGF8	2253	genome.wustl.edu	37	10	103534517	103534517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033163.2	-1	reviewed	p.N103K	1.000	84	0%	91	41.8%	0	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
WDR96	80217	genome.wustl.edu	37	10	105905300	105905300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.K1293R	1.000	157	0%	194	41.8%	36	44.4%	possibly_damaging(0.948)	tolerated(0.08)	deleterious(0.691)	superfamily_WD40 repeat-like
CHST15	51363	genome.wustl.edu	37	10	125780753	125780755	+	In_Frame_Del	DEL	GGG	GGG	-	rs5788647		TCGA-BG-A18B-01	TCGA-BG-A18B-01	GGG	GGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421115	-1	known	p.P455in_frame_del	0.985:0.982:0.979	-	-	-	-	-	-	-	-	-	NULL
ZNF511	118472	genome.wustl.edu	37	10	135125300	135125300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145806.2	+1	provisional	p.A212V	0.000	39	0%	42	47.6%	44	45.4%	benign(0)	tolerated(1)	-	NULL
TRIM68	55128	genome.wustl.edu	37	11	4621922	4621922	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018073.5	-1	reviewed	p.L348	1.000	158	0%	158	46.8%	8	37.5%	-	-	-	HMMSmart_PRY
OR51B6	390058	genome.wustl.edu	37	11	5373352	5373352	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004750.1	+1	provisional	p.V205	0.000	526	0%	507	39.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2AG1	144125	genome.wustl.edu	37	11	6806486	6806486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004489.2	+1	validated	p.F73S	0.969	230	0%	254	44.1%	0	-	possibly_damaging(0.594)	deleterious(0.02)	deleterious(0.588)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TMEM86A	144110	genome.wustl.edu	37	11	18723399	18723399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153347.1	+1	provisional	p.S189*	1.000	190	0%	167	45.5%	4	50%	-	-	-	HMMPfam_YhhN
EIF3M	10480	genome.wustl.edu	37	11	32611116	32611116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006360.3	+1	provisional	p.W154C	1.000	450	0%	326	42.6%	211	42.1%	benign(0.293)	tolerated(0.7)	neutral(0.092)	NULL
HSD17B12	51144	genome.wustl.edu	37	11	43861580	43861580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016142.2	+1	validated	p.H217R	1.000	1198	0%	994	43%	43	27.9%	benign(0.039)	tolerated(0.45)	neutral(0.014)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
CRY2	1408	genome.wustl.edu	37	11	45869075	45869075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021117.3	+1	validated	p.A33T	0.158	15	0%	10	50%	0	-	unknown(0)	tolerated(0.34)	-	NULL
ATG13	9776	genome.wustl.edu	37	11	46691065	46691065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142673.1	+1	validated	p.S487P	1.000	155	0%	162	42%	36	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF2224
MADD	8567	genome.wustl.edu	37	11	47317528	47317528	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.G1227	0.572	199	0%	189	41.3%	16	43.7%	-	-	-	NULL
VWCE	220001	genome.wustl.edu	37	11	61026349	61026349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152718.2	-1	validated	p.P889H	0.008	73	0%	105	11.4%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
FOSL1	8061	genome.wustl.edu	37	11	65664342	65664342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005438.3	-1	reviewed	p.R79W	0.810	85	0%	98	54.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBM4B	83759	genome.wustl.edu	37	11	66436693	66436693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031492.2	-1	provisional	p.G161D	1.000	96	0%	96	45.8%	19	47.3%	possibly_damaging(0.595)	tolerated(0.18)	neutral(0.262)	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RNA-binding domain RBD
GSTP1	2950	genome.wustl.edu	37	11	67353976	67353976	+	Silent	SNP	G	G	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398606	+1	known	p.R187	0.735	80	0%	66	28.8%	2151	51%	-	-	-	HMMPfam_GST_C,superfamily_GST_C_like
CTTN	2017	genome.wustl.edu	37	11	70263163	70263163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005231.3	+1	reviewed	p.R168*	1.000	119	0%	96	44.8%	53	5.6%	-	-	-	HMMPfam_HS1_rep
LRTOMT	220074	genome.wustl.edu	37	11	71819808	71819808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145308.1	+1	validated	p.A238V	1.000	51	0%	33	48.5%	1	0%	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DGAT2	84649	genome.wustl.edu	37	11	75509447	75509447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032564.3	+1	validated	p.P329S	1.000	48	0%	43	39.5%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGAT
DSCAML1	57453	genome.wustl.edu	37	11	117299166	117299166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.G2074R	1.000	7	0.000	6	0.667	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
NFRKB	4798	genome.wustl.edu	37	11	129742893	129742893	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006165.3	-1	validated	p.P908	1.000	51	0%	59	39%	7	28.5%	-	-	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129743892	129743892	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006165.3	-1	validated	p.S791	0.147	118	0%	131	42.7%	12	41.6%	-	-	-	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	2022212	2022212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172364.4	-1	reviewed	p.R135W	0.715	267	0%	247	45.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
DUSP16	80824	genome.wustl.edu	37	12	12630318	12630318	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030640.2	-1	reviewed	p.R483*	0.000	104	0%	116	45.7%	20	45%	-	-	-	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13768202	13768202	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	e6-1	1.000	122	0%	138	37%	0	-	-	-	-	-
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12D	1.000	334	0%	312	43.9%	2	100%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL2	8085	genome.wustl.edu	37	12	49446070	49446070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.R466C	0.014	330	0%	254	44.9%	5	60%	unknown(0)	-	-	NULL
FMNL3	91010	genome.wustl.edu	37	12	50052241	50052241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175736.4	-1	validated	p.R197C	1.000	53	0%	81	48.1%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Drf_GBD
TMPRSS12	283471	genome.wustl.edu	37	12	51237683	51237683	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182559.2	+1	validated	p.T82	0.000	160	0%	152	47.4%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KRT85	3891	genome.wustl.edu	37	12	52760856	52760856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.I112V	1.000	271	0%	222	41.4%	0	-	benign(0.076)	tolerated(0.25)	neutral(0.042)	NULL
SOAT2	8435	genome.wustl.edu	37	12	53509369	53509369	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003578.3	+1	reviewed	p.A213	0.000	16	0%	19	47.4%	0	-	-	-	-	HMMPfam_MBOAT
ERBB3	2065	genome.wustl.edu	37	12	56494022	56494022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.S1065F	0.000	482	0%	468	43.4%	25	48%	benign(0.029)	tolerated(0.09)	neutral(0.298)	NULL
STAT2	6773	genome.wustl.edu	37	12	56749234	56749234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005419.3	-1	reviewed	p.M155T	0.601	232	0%	214	43%	9	33.3%	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_STAT_alpha,superfamily_STAT
LRP1	4035	genome.wustl.edu	37	12	57567739	57567739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.G1175S	1.000	104	0%	85	47.1%	1	100%	possibly_damaging(0.675)	deleterious(0.02)	deleterious(0.623)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
PTPRB	5787	genome.wustl.edu	37	12	70970310	70970310	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.H898	0.008	113	0%	96	41.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PPP1R12A	4659	genome.wustl.edu	37	12	80190656	80190656	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143885.1	-1	reviewed	p.S789R	0.999	362	0%	311	46%	8	37.5%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
LIN7A	8825	genome.wustl.edu	37	12	81283079	81283079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004664.2	-1	validated	p.Q51R	1.000	411	0%	411	42.6%	0	-	possibly_damaging(0.722)	deleterious(0.05)	deleterious(0.607)	HMMSmart_SM00569,HMMPfam_L27
TMPO	7112	genome.wustl.edu	37	12	98927726	98927726	+	Missense_Mutation	SNP	A	A	G	rs34406338		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003276.2	+1	reviewed	p.Q564R	0.958	71	0%	76	46.1%	19	52.6%	benign(0.067)	deleterious(0.04)	neutral(0.353)	NULL
KL	9365	genome.wustl.edu	37	13	33635027	33635027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004795.3	+1	reviewed	p.P604H	1.000	111	0%	119	42%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_(Trans)glycosidases
FAM48A	55578	genome.wustl.edu	37	13	37622055	37622055	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014286.2	-1	validated	p.R20*	0.999	390	0%	336	41.1%	14	28.5%	-	-	-	NULL
ITM2B	9445	genome.wustl.edu	37	13	48830407	48830407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021999.4	+1	reviewed	p.T114I	1.000	135	0%	165	39.4%	550	39.4%	benign(0.124)	tolerated(0.16)	neutral(0.069)	NULL
KLF5	688	genome.wustl.edu	37	13	73636518	73636518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001730.3	+1	reviewed	p.A261T	1.000	124	0%	135	45.2%	34	32.3%	benign(0.129)	tolerated(0.09)	neutral(0.307)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103395416	103395416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.G2473D	0.000	178	0%	164	47%	0	-	-	-	-	NULL
RAB20	55647	genome.wustl.edu	37	13	111176303	111176303	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017817.1	-1	provisional	p.G138	0.000	48	0%	59	25.4%	28	28.5%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SALL2	6297	genome.wustl.edu	37	14	21991633	21991633	+	Silent	SNP	G	G	A	rs190385056	by1000genomes	TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.S743	0.000	60	0%	63	50.8%	2	0%	-	-	-	NULL
MYH6	4624	genome.wustl.edu	37	14	23853909	23853909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002471.3	-1	validated	p.E1769D	1.000	149	0%	144	43.1%	0	-	probably_damaging(0.992)	tolerated(0.33)	deleterious(0.472)	HMMPfam_Myosin_tail_1
FOXG1	2290	genome.wustl.edu	37	14	29237780	29237780	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005249.3	+1	reviewed	p.T432fs	0.999	-	-	-	-	-	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33291067	33291067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.A1350T	0.000	98	0%	79	46.8%	2	50%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
KLHL28	54813	genome.wustl.edu	37	14	45403545	45403545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017658.3	-1	validated	p.M372I	1.000	297	0%	260	44.6%	5	60%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CEP128	145508	genome.wustl.edu	37	14	81259399	81259399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152446.3	-1	validated	p.R422Q	0.996	296	0%	271	37.3%	9	44.4%	probably_damaging(0.963)	tolerated(1)	neutral(0.406)	NULL
ENSG00000216173	0	genome.wustl.edu	37	14	99828701	99828701	+	RNA	SNP	A	A	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401354	+1	novel	NULL	0.000	95	1.1%	77	48.1%	0	-	-	-	-	-
AHNAK2	113146	genome.wustl.edu	37	14	105406373	105406373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.G5139R	0.000	49	0%	60	31.7%	3	33.3%	possibly_damaging(0.904)	tolerated(0.13)	deleterious(0.611)	NULL
HERC2	8924	genome.wustl.edu	37	15	28502228	28502228	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.T832	0.230	128	0%	90	38.9%	0	-	-	-	-	NULL
ENSG00000221138	0	genome.wustl.edu	37	15	33256249	33256249	+	RNA	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408211	-1	novel	NULL	0.013	188	0.5%	171	24%	0	-	-	-	-	-
GJD2	57369	genome.wustl.edu	37	15	35045218	35045218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020660.1	-1	provisional	p.K143E	1.000	73	0%	81	42%	0	-	benign(0.01)	tolerated(0.31)	neutral(0.028)	NULL
THBS1	7057	genome.wustl.edu	37	15	39881287	39881287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397593	+1	known	p.S25N	1.000	232	0%	246	43.1%	13	15.3%	unknown(0)	-	-	NULL
C15orf52	388115	genome.wustl.edu	37	15	40629609	40629609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207380.2	-1	validated	p.A285V	0.009	166	0%	153	43.1%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
DNAJC17	55192	genome.wustl.edu	37	15	41067243	41067243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018163.2	-1	validated	p.R196W	0.136	205	0%	178	57.9%	41	46.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF54928
TYRO3	7301	genome.wustl.edu	37	15	41863264	41863264	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006293.3	+1	reviewed	p.Q536	0.998	359	0%	347	47.8%	3	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
TTBK2	146057	genome.wustl.edu	37	15	43067596	43067596	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173500.3	-1	reviewed	p.S579fs	1.000	-	-	-	-	-	-	-	-	-	NULL
MNS1	55329	genome.wustl.edu	37	15	56735642	56735642	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018365.2	-1	reviewed	p.K333*	0.000	623	0%	457	42.5%	21	0%	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	62967479	62967479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.R306W	0.979	216	0.5%	161	46%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
DAPK2	23604	genome.wustl.edu	37	15	64218226	64218226	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014326.3	-1	reviewed	p.V242	1.000	197	0%	178	45.5%	16	56.2%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
HEXA	3073	genome.wustl.edu	37	15	72647903	72647903	+	Missense_Mutation	SNP	G	G	C	rs121907962		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000520.4	-1	reviewed	p.R137G	0.998	207	0%	212	42.5%	86	53.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain
GOLGA6B	55889	genome.wustl.edu	37	15	72958134	72958134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018652.4	+1	reviewed	p.T570A	0.997	711	0%	770	8.3%	0	-	benign(0.388)	tolerated(1)	neutral(0.124)	NULL
C15orf42	90381	genome.wustl.edu	37	15	90167181	90167181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.H1214Y	0.106	65	0%	59	44.1%	4	0%	benign(0.372)	tolerated(0.14)	neutral(0.368)	NULL
KIF7	374654	genome.wustl.edu	37	15	90193017	90193017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198525.2	-1	validated	p.A162T	0.995	91	0%	89	41.6%	0	-	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
ANPEP	290	genome.wustl.edu	37	15	90344733	90344733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001150.2	-1	reviewed	p.G559W	0.997	156	0%	175	47.4%	10	70%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91030271	91030271	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.D1370	0.949	165	0%	168	47%	67	41.7%	-	-	-	NULL
LRRK1	79705	genome.wustl.edu	37	15	101567917	101567917	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.V867	0.972	38	0%	24	50%	2	0%	-	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3789648	3789648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.G1404V	1.000	158	0%	122	44.3%	14	35.7%	unknown(0)	deleterious(0)	-	HMMPfam_DUF906
LOC342346	342346	genome.wustl.edu	37	16	4644725	4644725	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145011.1	+1	predicted	p.G1016	0.974	30	0%	39	48.7%	0	-	-	-	-	NULL
ANKS3	124401	genome.wustl.edu	37	16	4748887	4748887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133450.2	-1	provisional	p.A489T	1.000	18	0%	28	39.3%	12	33.3%	possibly_damaging(0.594)	tolerated(0.15)	neutral(0.446)	superfamily_SAM_homology
CLEC16A	23274	genome.wustl.edu	37	16	11114095	11114095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015226.2	+1	validated	p.A450V	0.717	37	0%	26	38.5%	2	100%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
EEF2K	29904	genome.wustl.edu	37	16	22256035	22256035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013302.3	+1	reviewed	p.R111C	0.023	125	0%	114	38.6%	7	28.5%	benign(0.005)	tolerated(0.15)	neutral(0.241)	superfamily_Kinase_like
USP31	57478	genome.wustl.edu	37	16	23080434	23080434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020718.3	-1	validated	p.V998I	0.951	268	0%	234	49.6%	0	-	possibly_damaging(0.946)	deleterious(0.05)	deleterious(0.736)	NULL
PRKCB	5579	genome.wustl.edu	37	16	24046789	24046789	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002738.6	+1	reviewed	p.L150	0.964	51	0%	36	41.7%	1	0%	-	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
IL4R	3566	genome.wustl.edu	37	16	27375004	27375004	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000418.2	+1	reviewed	p.P777	0.000	50	0%	54	46.3%	5	20%	-	-	-	NULL
ZNF48	197407	genome.wustl.edu	37	16	30409518	30409518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152652.1	+1	provisional	p.S316F	0.395	94	0%	90	48.9%	12	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF688	146542	genome.wustl.edu	37	16	30581442	30581442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145271.3	-1	validated	p.R209Q	1.000	22	0%	15	46.7%	33	42.4%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	superfamily_C2H2 and C2HC zinc fingers
SETD1A	9739	genome.wustl.edu	37	16	30995246	30995246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.V1676M	1.000	96	0%	54	37%	54	40.7%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
ITGAX	3687	genome.wustl.edu	37	16	31384645	31384645	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000887.3	+1	reviewed	p.S814	1.000	92	0%	81	35.8%	14	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
MYLK3	91807	genome.wustl.edu	37	16	46741651	46741651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182493.2	-1	validated	p.A809T	1.000	260	0%	241	39%	4	0%	possibly_damaging(0.776)	tolerated(0.19)	neutral(0.339)	NULL
CETP	1071	genome.wustl.edu	37	16	57017280	57017280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000078.2	+1	reviewed	p.V455A	1.000	143	0%	123	39%	6	0%	benign(0.012)	deleterious(0.02)	neutral(0.384)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
DYNC1LI2	1783	genome.wustl.edu	37	16	66768206	66768206	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006141.2	-1	validated	p.A236	0.764	128	0%	117	44.4%	23	52.1%	-	-	-	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases
WWP2	11060	genome.wustl.edu	37	16	69971461	69971461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007014.3	+1	reviewed	p.C750F	1.000	50	0%	60	53.3%	26	34.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
CHST6	4166	genome.wustl.edu	37	16	75513474	75513474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021615.4	-1	reviewed	p.A85T	0.857	14	0%	11	36.4%	13	38.4%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
WWOX	51741	genome.wustl.edu	37	16	78420792	78420792	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016373.1	+1	reviewed	p.L184	0.927	190	0%	218	42.7%	3	66.6%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
MVD	4597	genome.wustl.edu	37	16	88722097	88722097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002461.1	-1	reviewed	p.M215I	1.000	27	0%	29	20.7%	37	51.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF55060
ANKRD11	29123	genome.wustl.edu	37	16	89352480	89352480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.G287C	1.000	82	0%	89	36%	13	53.8%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_Ankyrin repeat
SPG7	6687	genome.wustl.edu	37	16	89592801	89592801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003119.2	+1	reviewed	p.A228V	0.999	281	0%	237	43.9%	32	53.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_FtsH_ext
ASPA	443	genome.wustl.edu	37	17	3386871	3386871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000049.2	+1	reviewed	p.A171S	1.000	350	0%	327	39.4%	0	-	possibly_damaging(0.837)	tolerated(0.4)	neutral(0.336)	HMMPfam_AstE_AspA
SLC16A11	162515	genome.wustl.edu	37	17	6945716	6945717	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153357.1	-1	validated	p.Y262fs	0.979:0.981	-	-	-	-	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
YBX2	51087	genome.wustl.edu	37	17	7193824	7193824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015982.3	-1	validated	p.G164W	0.995	18	0%	17	58.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Nucleic_acid_OB
MYH3	4621	genome.wustl.edu	37	17	10545571	10545571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.S649A	1.000	187	0%	149	36.9%	1	0%	possibly_damaging(0.729)	deleterious(0.02)	deleterious(0.649)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
HS3ST3A1	9955	genome.wustl.edu	37	17	13399926	13399926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006042.1	-1	reviewed	p.T270M	1.000	79	0%	94	25.5%	2	0%	possibly_damaging(0.797)	deleterious(0.03)	deleterious(0.664)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS3ST3B1	9953	genome.wustl.edu	37	17	14248554	14248554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006041.1	+1	reviewed	p.T255M	1.000	48	0%	67	23.9%	2	0%	possibly_damaging(0.797)	deleterious(0.02)	deleterious(0.682)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
LLGL1	3996	genome.wustl.edu	37	17	18145300	18145300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004140.3	+1	reviewed	p.A957T	0.000	70	1.4%	64	43.8%	21	57.1%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
MYO18A	399687	genome.wustl.edu	37	17	27493916	27493916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078471.3	-1	validated	p.R15W	0.969	188	0%	148	44.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CPD	1362	genome.wustl.edu	37	17	28766007	28766007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001304.3	+1	reviewed	p.M714I	1.000	175	0%	140	35%	7	57.1%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
RAB11FIP4	84440	genome.wustl.edu	37	17	29850544	29850544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032932.3	+1	validated	p.S315N	1.000	132	0%	144	33.3%	16	50%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32364844	32364844	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430493	-1	known	p.P625	1.000	245	0.4%	288	42.4%	4	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KRT27	342574	genome.wustl.edu	37	17	38938537	38938537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181537.3	-1	reviewed	p.A70V	0.000	124	0%	140	51.4%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
KRTAP4-6	81871	genome.wustl.edu	37	17	39296318	39296318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000345847	-1	known	p.R141H	0.008	129	0.8%	119	22.7%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Keratin_B2
KRT37	8688	genome.wustl.edu	37	17	39578397	39578397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003770.4	-1	reviewed	p.C315Y	0.974	96	0%	110	41.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Filament
KLHL10	317719	genome.wustl.edu	37	17	40004386	40004386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152467.3	+1	validated	p.D552N	0.832	247	0%	261	44.1%	0	-	benign(0.089)	tolerated(1)	neutral(0.006)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
IGF2BP1	10642	genome.wustl.edu	37	17	47121355	47121355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006546.3	+1	reviewed	p.Q409H	1.000	104	0%	98	40.8%	0	-	benign(0.002)	tolerated(0.58)	neutral(0.005)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
RSAD1	55316	genome.wustl.edu	37	17	48559701	48559701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018346.1	+1	provisional	p.R242W	0.134	38	2.6%	31	41.9%	7	57.1%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMSmart_Elp3,superfamily_SSF102114
LOC100288505	100288505	genome.wustl.edu	37	17	48616369	48616369	+	Splice_Site	SNP	C	C	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343569.1	-1	model	e7-1	0.998	20	0%	30	36.7%	0	-	-	-	-	-
AXIN2	8313	genome.wustl.edu	37	17	63554353	63554353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004655.3	-1	reviewed	p.R129L	1.000	330	0%	333	45.9%	6	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
APOH	350	genome.wustl.edu	37	17	64210715	64210716	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000042.2	-1	reviewed	p.R279fs	0.990:0.992	-	-	-	-	-	-	-	-	-	HMMPfam_Sushi_2,superfamily_Complement_control_module
ABCA8	10351	genome.wustl.edu	37	17	66871498	66871499	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.D1471fs	0.967:0.971	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CDC42EP4	23580	genome.wustl.edu	37	17	71282585	71282585	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012121.4	-1	reviewed	p.R19*	0.998	21	0%	21	42.9%	21	52.3%	-	-	-	NULL
BTBD17	388419	genome.wustl.edu	37	17	72352855	72352855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080466.1	-1	provisional	p.L460M	1.000	165	0%	111	45%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GRIN2C	2905	genome.wustl.edu	37	17	72846813	72846813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000835.3	-1	reviewed	p.L403M	1.000	17	0%	34	44.1%	0	-	benign(0.368)	deleterious(0.01)	deleterious(0.523)	superfamily_Periplasmic binding protein-like II
FADS6	283985	genome.wustl.edu	37	17	72889586	72889586	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178128.3	-1	validated	p.D36	0.335	8	0.000	17	0.412	0	-	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76567795	76567795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.Q203H	1.000	102	0%	102	49%	0	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_DHC_N1
PYCR1	5831	genome.wustl.edu	37	17	79893235	79893235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006907.2	-1	reviewed	p.V99A	1.000	48	0%	45	37.8%	132	57.5%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
ZNF750	79755	genome.wustl.edu	37	17	80789425	80789425	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024702.2	-1	reviewed	p.Y302	0.003	293	0%	279	43.4%	9	33.3%	-	-	-	NULL
ZFP161	7541	genome.wustl.edu	37	18	5291353	5291353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143823.1	-1	validated	p.T285M	1.000	158	0%	190	44.7%	11	45.4%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF397	84307	genome.wustl.edu	37	18	32825965	32825965	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135178.2	+1	reviewed	p.K432	1.000	159	0%	160	45.6%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF236	7776	genome.wustl.edu	37	18	74624253	74624253	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007345.3	+1	validated	p.Q951	0.002	94	0%	94	47.9%	3	66.6%	-	-	-	NULL
MBP	4155	genome.wustl.edu	37	18	74700437	74700437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397869	-1	known	p.R122H	0.000	188	0%	180	51.7%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Myelin_MBP
PIP5K1C	23396	genome.wustl.edu	37	19	3643358	3643358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012398.1	-1	reviewed	p.C511Y	1.000	156	0%	103	40.8%	13	61.5%	possibly_damaging(0.952)	deleterious(0.04)	deleterious(0.744)	NULL
PLIN5	440503	genome.wustl.edu	37	19	4529195	4529195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013706.2	-1	validated	p.R137Q	1.000	13	0%	17	47.1%	0	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_Perilipin
SAFB	6294	genome.wustl.edu	37	19	5667374	5667374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002967.2	+1	reviewed	p.G822W	1.000	70	0%	98	36.7%	70	50%	unknown(0)	deleterious(0)	-	NULL
C19orf70	125988	genome.wustl.edu	37	19	5679374	5679374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205767.1	-1	validated	p.R81S	0.998	179	0%	187	40.1%	191	39.2%	probably_damaging(0.993)	tolerated(0.69)	neutral(0.452)	NULL
MUC16	94025	genome.wustl.edu	37	19	9068021	9068021	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S6475	0.000	360	0.3%	380	35.5%	0	-	-	-	-	NULL
ZNF699	374879	genome.wustl.edu	37	19	9408633	9408633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198535.1	-1	provisional	p.Q70R	0.910	236	0%	184	51.1%	1	100%	benign(0.004)	tolerated(0.49)	neutral(0.011)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF812	729648	genome.wustl.edu	37	19	9800989	9800989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726949.2	-1	model	p.A324E	0.064	200	0%	134	32.1%	18	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KEAP1	9817	genome.wustl.edu	37	19	10610218	10610218	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012289.3	-1	reviewed	p.I164	0.710	73	0%	85	45.9%	51	50.9%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
CDKN2D	1032	genome.wustl.edu	37	19	10677762	10677762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001800.3	-1	reviewed	p.L158P	0.997	35	0%	33	33.3%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SMARCA4	6597	genome.wustl.edu	37	19	11169489	11169489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128849.1	+1	reviewed	p.R1552H	1.000	61	0%	54	40.7%	410	44.3%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
DOCK6	57572	genome.wustl.edu	37	19	11333750	11333750	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.S996	1.000	31	0%	32	40.6%	7	57.1%	-	-	-	NULL
ZNF653	115950	genome.wustl.edu	37	19	11597847	11597847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138783.3	-1	validated	p.S433N	0.822	62	0%	67	59.7%	15	60%	possibly_damaging(0.807)	deleterious(0.02)	deleterious(0.687)	NULL
ANO8	57719	genome.wustl.edu	37	19	17436068	17436068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020959.2	-1	validated	p.A930V	0.963	14	0%	11	36.4%	7	14.2%	unknown(0)	deleterious(0.03)	-	NULL
ISYNA1	51477	genome.wustl.edu	37	19	18545801	18545801	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016368.4	-1	validated	p.P533	0.000	58	0%	64	45.3%	155	45.8%	-	-	-	NULL
FFAR1	2864	genome.wustl.edu	37	19	35843061	35843061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005303.2	+1	reviewed	p.V203M	0.998	36	0%	34	52.9%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_7tm_1,superfamily_SSF81321
C19orf47	126526	genome.wustl.edu	37	19	40832279	40832279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178830.2	-1	predicted	p.R155H	1.000	194	0%	146	46.6%	14	42.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
CYP2A6	1548	genome.wustl.edu	37	19	41350661	41350661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000762.5	-1	reviewed	p.P393H	0.996	251	0%	236	45.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
DMPK	1760	genome.wustl.edu	37	19	46280959	46280959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081563.1	-1	reviewed	p.T293M	1.000	39	0%	46	34.8%	17	41.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DMWD	1762	genome.wustl.edu	37	19	46289926	46289926	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004943.1	-1	validated	p.P276	0.641	19	0%	30	56.7%	9	55.5%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
LMTK3	114783	genome.wustl.edu	37	19	49001749	49001749	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080434.1	-1	provisional	p.T888	0.541	26	0%	19	42.1%	3	33.3%	-	-	-	HMMSmart_SM00220
FUT2	2524	genome.wustl.edu	37	19	49206444	49206444	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000511.5	+1	reviewed	p.G77	0.841	51	0%	59	50.8%	10	60%	-	-	-	HMMPfam_Glyco_transf_11
TRPM4	54795	genome.wustl.edu	37	19	49703643	49703643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017636.2	+1	provisional	p.T911M	1.000	118	0%	80	56.2%	117	57.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans
LILRA2	11027	genome.wustl.edu	37	19	55086931	55086931	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130917.1	+1	validated	p.S288	0.003	88	0%	103	43.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PPP1R12C	54776	genome.wustl.edu	37	19	55624037	55624037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017607.2	-1	provisional	p.A150T	0.958	27	0%	34	44.1%	10	40%	possibly_damaging(0.813)	deleterious(0.03)	deleterious(0.671)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
C20orf202	400831	genome.wustl.edu	37	20	1184201	1184201	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009612.2	+1	predicted	p.S14T	0.052	123	0%	98	39.8%	0	-	benign(0.227)	-	-	NULL
CPXM1	56265	genome.wustl.edu	37	20	2777926	2777926	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019609.4	-1	reviewed	p.V248	1.000	111	0%	101	54.5%	19	0%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
XRN2	22803	genome.wustl.edu	37	20	21327149	21327149	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.Y542	0.595	364	0%	300	47%	37	37.8%	-	-	-	NULL
WFDC2	10406	genome.wustl.edu	37	20	44098458	44098458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006103.3	+1	reviewed	p.L13I	0.089	30	0%	22	40.9%	7629	49.2%	possibly_damaging(0.93)	tolerated(0.16)	neutral(0.436)	NULL
BCAS1	8537	genome.wustl.edu	37	20	52644881	52644881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411563	-1	known	p.A161V	0.003	96	0%	112	51.8%	0	-	unknown(0)	-	-	NULL
SLCO4A1	28231	genome.wustl.edu	37	20	61297807	61297807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016354.3	+1	validated	p.G451D	0.990	128	0%	122	41.8%	2	50%	unknown(0)	tolerated(0.07)	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
LTN1	26046	genome.wustl.edu	37	21	30315604	30315604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015565.2	-1	validated	p.D1425E	1.000	185	0%	115	40%	6	33.3%	benign(0.146)	tolerated(1)	neutral(0.013)	NULL
URB1	9875	genome.wustl.edu	37	21	33723030	33723030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.V939L	0.986	29	0%	38	34.2%	9	77.7%	possibly_damaging(0.527)	tolerated(0.22)	neutral(0.220)	NULL
RUNX1	861	genome.wustl.edu	37	21	36206817	36206817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001754.4	-1	reviewed	p.R232L	1.000	184	0%	189	47.6%	14	35.7%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
CBS	875	genome.wustl.edu	37	21	44486442	44486442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000071.2	-1	reviewed	p.R121H	1.000	26	0%	40	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_CYS_SYNTHASE,HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GGT1	2678	genome.wustl.edu	37	22	25019114	25019114	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032364.2	+1	reviewed	p.A258	0.265	46	0%	49	40.8%	30	66.6%	-	-	-	HMMPfam_G_glu_transpept
MN1	4330	genome.wustl.edu	37	22	28193931	28193931	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002430.2	-1	reviewed	p.G867	0.963	58	0%	58	48.3%	0	-	-	-	-	NULL
FBXO7	25793	genome.wustl.edu	37	22	32889178	32889178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012179.3	+1	reviewed	p.V352I	0.869	616	0.2%	586	46.6%	111	43.2%	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
MYH9	4627	genome.wustl.edu	37	22	36702647	36702647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002473.4	-1	reviewed	p.R617H	1.000	36	0%	48	41.7%	111	35.1%	benign(0.184)	deleterious(0.01)	neutral(0.423)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMPRSS6	164656	genome.wustl.edu	37	22	37462131	37462131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153609.2	-1	reviewed	p.V809M	1.000	55	0%	46	30.4%	0	-	possibly_damaging(0.442)	tolerated(0.06)	neutral(0.467)	superfamily_Trypsin-like serine proteases
PHF21B	112885	genome.wustl.edu	37	22	45316294	45316294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138415.3	-1	validated	p.A66V	1.000	33	0%	35	48.6%	0	-	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
BRD1	23774	genome.wustl.edu	37	22	50187832	50187832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014577.1	-1	reviewed	p.R737W	0.124	70	0%	74	32.4%	19	21%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NCAPH2	29781	genome.wustl.edu	37	22	50956675	50956675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152299.3	+1	reviewed	p.A205V	0.000	56	0%	51	35.3%	46	54.3%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_DUF1032
TLR7	51284	genome.wustl.edu	37	X	12906271	12906271	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016562.3	+1	reviewed	p.Q882*	0.594	213	0%	187	38%	0	-	-	-	-	superfamily_Toll/Interleukin receptor TIR domain
BEND2	139105	genome.wustl.edu	37	X	18183229	18183230	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153346.4	-1	validated	p.R767fs	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962542	34962542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.R532C	0.003	146	0%	153	49%	0	-	benign(0.023)	deleterious(0.01)	neutral(0.407)	NULL
RPGR	6103	genome.wustl.edu	37	X	38145180	38145180	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034853.1	-1	reviewed	p.E1024	0.000	151	0%	187	51.9%	0	-	-	-	-	NULL
SSX9	280660	genome.wustl.edu	37	X	48163101	48163101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376909	-1	known	p.N73S	0.001	689	0%	576	42.5%	0	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
SHROOM4	57477	genome.wustl.edu	37	X	50376425	50376425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.H883R	0.256	229	0%	250	50.4%	2	50%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
FAAH2	158584	genome.wustl.edu	37	X	57313277	57313277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174912.3	+1	reviewed	p.A7T	0.002	108	0%	136	47.1%	5	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
MSN	4478	genome.wustl.edu	37	X	64959710	64959710	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.R563	0.978	122	0%	116	53.4%	75	0%	-	-	-	superfamily_Moesin,HMMPfam_ERM
IL2RG	3561	genome.wustl.edu	37	X	70329192	70329192	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000482750	-1	known	p.W19*	0.898	163	0%	167	47.9%	43	0%	benign(0.055)	tolerated(0.57)	neutral(0.009)	PatternScan_HEMATOPO_REC_S_F1,superfamily_Fibronectin type III
MED12	9968	genome.wustl.edu	37	X	70348505	70348505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.R1138W	1.000	255	0%	270	44.4%	14	92.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177504	89177504	+	Silent	SNP	G	G	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138960.3	+1	reviewed	p.A140	0.000	112	0%	150	42.7%	0	-	-	-	-	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100911501	100911501	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.T358	0.521	96	0%	138	44.2%	6	50%	-	-	-	superfamily_ARM-type_fold
GPRASP2	114928	genome.wustl.edu	37	X	101971348	101971348	+	Silent	SNP	C	C	T	rs35846271		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.P517	0.279	60	0%	71	52.1%	1	100%	-	-	-	NULL
NGFRAP1	27018	genome.wustl.edu	37	X	102632699	102632699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206915.1	+1	validated	p.M94V	0.991	213	0%	201	44.3%	361	95.8%	benign(0)	tolerated(0.93)	-	HMMPfam_BEX
CAPN6	827	genome.wustl.edu	37	X	110491215	110491215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.L497P	1.000	158	0%	178	46.1%	78	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Peptidase_C2,superfamily_C2_CaLB
ZBTB33	10009	genome.wustl.edu	37	X	119388865	119388865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006777.3	+1	reviewed	p.P532L	1.000	114	0%	137	51.8%	8	0%	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SMARCA1	6594	genome.wustl.edu	37	X	128631828	128631829	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.E499fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MBNL3	55796	genome.wustl.edu	37	X	131540408	131540408	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018388.3	-1	reviewed	p.R64*	0.860	255	0%	264	51.5%	2	100%	-	-	-	HMMPfam_zf-CCCH,HMMSmart_SM00356
FAM127A	8933	genome.wustl.edu	37	X	134166545	134166545	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078171.1	+1	validated	p.I44	1.000	108	0%	92	37%	141	0%	-	-	-	NULL
GPR50	9248	genome.wustl.edu	37	X	150349120	150349120	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004224.3	+1	reviewed	p.C355	0.035	138	0%	138	37%	0	-	-	-	-	NULL
FLNA	2316	genome.wustl.edu	37	X	153590879	153590879	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.F824	0.996	65	0%	44	38.6%	30	53.3%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
VBP1	7411	genome.wustl.edu	37	X	154444817	154444817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18B-01	TCGA-BG-A18B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003372.5	+1	reviewed	p.R20W	0.860	100	0%	69	43.5%	28	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
