Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ACAP3	116983	genome.wustl.edu	37	1	1234016	1234016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030649.2	-1	validated	p.A265V	0.994	23	0%	51	43.1%	21	47.6%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	superfamily_PH domain-like
DNAJC11	55735	genome.wustl.edu	37	1	6741012	6741012	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.S53*	0.066	369	0%	571	40.5%	12	50%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
CSMD2	114784	genome.wustl.edu	37	1	34070890	34070890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.K2177M	0.997	120	0%	175	46.9%	0	-	possibly_damaging(0.691)	deleterious(0.02)	deleterious(0.631)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SZT2	23334	genome.wustl.edu	37	1	43896276	43896276	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.S631	0.030	77	0%	127	31.5%	2	50%	-	-	-	NULL
LPHN2	23266	genome.wustl.edu	37	1	82434881	82434881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.E831G	0.806	396	0%	533	37.1%	12	50%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_7tm_2
CTBS	1486	genome.wustl.edu	37	1	85040033	85040033	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004388.2	-1	validated	p.L22	0.000	4	0.000	7	0.714	0	-	-	-	-	superfamily_(Trans)glycosidases
QSOX1	5768	genome.wustl.edu	37	1	180151344	180151344	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002826.4	+1	reviewed	p.A214	0.000	128	0.8%	190	39.5%	84	38%	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	216019377	216019377	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	e44-2	1.000	157	0%	143	58.7%	0	-	-	-	-	-
ST3GAL5	8869	genome.wustl.edu	37	2	86088413	86088413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003896.3	-1	reviewed	p.C70S	0.362	321	0%	460	39.6%	0	-	benign(0.184)	deleterious(0.01)	neutral(0.423)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168101141	168101141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.T1080I	0.000	89	0%	73	61.6%	0	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207170379	207170379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.D376G	0.000	274	0%	222	76.6%	0	-	benign(0.004)	tolerated(0.74)	neutral(0.002)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212295788	212295788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005235.2	-1	reviewed	p.R842Q	1.000	267	0%	258	62.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
FN1	2335	genome.wustl.edu	37	2	216239967	216239967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.R2043C	0.985	114	0%	71	81.7%	34	0%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
VHL	7428	genome.wustl.edu	37	3	10191506	10191506	+	Missense_Mutation	SNP	C	C	T	rs5030820	byCluster	TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000551.2	+1	reviewed	p.R167W	0.974	174	0%	144	13.2%	31	6.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VHL,superfamily_VHL
ACOX2	8309	genome.wustl.edu	37	3	58510221	58510221	+	Silent	SNP	T	T	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003500.3	-1	reviewed	p.P486	0.991	82	0%	66	80.3%	12	100%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916928	178916933	+	In_Frame_Del	DEL	AGGCAA	AGGCAA	-	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	AGGCAA	AGGCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.GN106in_frame_del	0.996:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236
DCK	1633	genome.wustl.edu	37	4	71895096	71895096	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504952	+1	known	p.I294S	0.792	285	0%	353	41.1%	21	38%	unknown(0)	-	-	NULL
IL6ST	3572	genome.wustl.edu	37	5	55237111	55237111	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002184.2	-1	reviewed	p.I852	0.997	165	0%	216	38.9%	10	30%	-	-	-	NULL
PCDHA7	56141	genome.wustl.edu	37	5	140214382	140214382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.R138S	0.000	156	0%	212	39.6%	0	-	benign(0.07)	tolerated(0.4)	neutral(0.021)	HMMPfam_Cadherin,superfamily_Cadherin-like
DST	667	genome.wustl.edu	37	6	56457147	56457147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.L1623I	1.000	197	0%	253	47%	1	100%	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ENSG00000240720	0	genome.wustl.edu	37	7	91794299	91794299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.R73K	0.000	360	0%	516	45.9%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
KIAA1967	57805	genome.wustl.edu	37	8	22471636	22471637	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.Y247fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
OPRK1	4986	genome.wustl.edu	37	8	54142329	54142329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000912.3	-1	validated	p.L224P	0.993	69	0%	92	30.4%	1	100%	benign(0.058)	tolerated(0.22)	neutral(0.046)	HMMPfam_7tm_1,superfamily_SSF81321
RAD54B	25788	genome.wustl.edu	37	8	95399326	95399326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012415.2	-1	reviewed	p.L624Q	0.008	398	0%	623	47%	11	45.4%	benign(0.016)	tolerated(0.66)	neutral(0.003)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5790369	5790369	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.S1662*	0.001	97	0%	113	40.7%	12	41.6%	-	-	-	NULL
HSPA14	51182	genome.wustl.edu	37	10	14881981	14881981	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016299.2	+1	validated	p.E45D	1.000	241	0%	244	39.3%	15	53.3%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FAM171A1	221061	genome.wustl.edu	37	10	15256485	15256485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.R368C	0.053	69	0%	94	40.4%	17	52.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_UPF0560
VIM	7431	genome.wustl.edu	37	10	17275604	17275604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003380.3	+1	reviewed	p.L215V	0.813	168	0%	199	39.7%	1172	17.4%	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	HMMPfam_Filament
PLXDC2	84898	genome.wustl.edu	37	10	20290845	20290845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032812.7	+1	provisional	p.D85V	1.000	105	0%	146	34.2%	4	0%	possibly_damaging(0.68)	deleterious(0.02)	deleterious(0.625)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50098640	50098640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020945.1	+1	validated	p.S2395C	0.998	119	0%	128	40.6%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	superfamily_PH domain-like
ANXA7	310	genome.wustl.edu	37	10	75156920	75156920	+	Splice_Site	SNP	A	A	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004034.2	-1	reviewed	e3+2	0.998	112	0%	120	45%	13	100%	-	-	-	-
CUTC	51076	genome.wustl.edu	37	10	101515437	101515437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015960.2	+1	validated	p.V255L	1.000	312	0%	329	28.6%	22	31.8%	benign(0.411)	tolerated(0.15)	neutral(0.374)	superfamily_CutC-like (Pfam 03932)
CARS	833	genome.wustl.edu	37	11	3062232	3062232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014438.1	-1	reviewed	p.P24S	0.001	216	0%	363	39.1%	1	100%	benign(0)	-	-	NULL
MS4A4A	51338	genome.wustl.edu	37	11	60073605	60073605	+	Silent	SNP	G	G	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148975.1	+1	reviewed	p.V193	0.033	857	0.1%	1148	45.8%	8	0%	-	-	-	HMMPfam_CD20
GRM5	2915	genome.wustl.edu	37	11	88780913	88780913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.V43A	1.000	162	0%	238	41.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Periplasmic binding protein-like I
TECTA	7007	genome.wustl.edu	37	11	121038848	121038848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.T1891M	1.000	370	0%	521	43.4%	0	-	benign(0.317)	deleterious(0.01)	deleterious(0.505)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
DNAJC22	79962	genome.wustl.edu	37	12	49745143	49745143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024902.2	+1	provisional	p.R295Q	0.708	102	0%	127	45.7%	14	28.5%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N
ARHGEF7	8874	genome.wustl.edu	37	13	111940783	111940783	+	Silent	SNP	C	C	G	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113511.1	+1	reviewed	p.L730	0.782	289	0%	270	67.8%	7	71.4%	-	-	-	NULL
CNIH	10175	genome.wustl.edu	37	14	54898860	54898860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005776.2	-1	validated	p.L77I	1.000	139	0%	122	59.8%	16	62.5%	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	HMMPfam_Cornichon
UACA	55075	genome.wustl.edu	37	15	70960378	70960379	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018003.2	-1	validated	p.E882fs	0.983:0.989	-	-	-	-	-	-	-	-	-	NULL
MEF2A	4205	genome.wustl.edu	37	15	100230607	100230607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005587.2	+1	reviewed	p.S280P	1.000	144	0%	109	11.9%	14	7.1%	possibly_damaging(0.736)	deleterious(0.03)	deleterious(0.633)	NULL
ASPHD1	253982	genome.wustl.edu	37	16	29912801	29912802	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181718.3	+1	validated	p.173in_frame_insG	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LOC100129191	100129191	genome.wustl.edu	37	16	30846344	30846344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725676.1	-1	model	p.G46R	0.000	14	0.000	9	0.889	0	-	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72829430	72829430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.T2384I	1.000	85	0%	81	82.7%	4	100%	unknown(0)	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.Y220C	0.998	315	0%	225	73.3%	39	89.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
KANK2	25959	genome.wustl.edu	37	19	11289254	11289254	+	Silent	SNP	T	T	C	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136191.2	-1	validated	p.Q464	0.000	54	0%	34	82.4%	10	60%	-	-	-	NULL
UPF1	5976	genome.wustl.edu	37	19	18967072	18967072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.R596Q	1.000	39	0%	20	65%	20	80%	possibly_damaging(0.747)	deleterious(0.04)	deleterious(0.623)	superfamily_SSF52540
ENSG00000171101	0	genome.wustl.edu	37	19	51671605	51671605	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341811	+1	known	p.T202	0.000	83	0%	40	80%	0	-	-	-	-	superfamily_SSF48726
CDH22	64405	genome.wustl.edu	37	20	44815501	44815501	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021248.1	-1	reviewed	p.Y503	0.976	245	0%	357	48.7%	4	25%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
CDH4	1002	genome.wustl.edu	37	20	60503443	60503443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.A656V	0.037	14	0.000	9	0.444	1	0%	benign(0.015)	tolerated(0.53)	neutral(0.008)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
COL9A3	1299	genome.wustl.edu	37	20	61460850	61460850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001853.3	+1	reviewed	p.R351Q	0.003	52	0%	56	21.4%	0	-	possibly_damaging(0.922)	tolerated(0.24)	neutral(0.409)	NULL
MIOX	55586	genome.wustl.edu	37	22	50925841	50925841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18C-01	TCGA-BG-A18C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017584.5	+1	validated	p.P15S	0.999	64	0%	48	68.8%	0	-	probably_damaging(0.988)	tolerated(0.13)	deleterious(0.690)	NULL
