Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACTR3B	57180	genome.wustl.edu	37	7	152550654	152550654	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	152550654	152550654	G	A	SNP	ACTR3B	NM_020445	human	genbank	57_37b	+1	validated	missense	c.1153	p.A385T	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE	-	no_errors	
APOA5	116519	genome.wustl.edu	37	11	116660880	116660881	+	In_Frame_Ins	INS	-	-	AGG	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	116660880	116660881	-	AGG	INS	APOA5	NM_052968	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.1065_1064	p.356in_frame_insL	0.726:0.838	NULL	superfamily_SSF47162,HMMPfam_Apolipoprotein	-	no_errors	
C19orf57	79173	genome.wustl.edu	37	19	14000926	14000926	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14000926	14000926	T	-	DEL	C19orf57	NM_024323	human	genbank	57_37b	-1	predicted	frame_shift_del	c.743	p.D248fs	0.022	NULL	NULL	(deletion:cds_exon[14000001,14001275])	no_errors	
C19orf57	79173	genome.wustl.edu	37	19	14000926	14000926	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14000926	14000926	T	-	DEL	C19orf57	NM_024323	human	genbank	57_37b	-1	predicted	frame_shift_del	c.743	p.D248fs	0.022	NULL	NULL	(deletion:cds_exon[14000001,14001275])	no_errors	
CBX1	10951	genome.wustl.edu	37	17	46152423	46152423	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46152423	46152423	C	T	SNP	CBX1	NM_001127228	human	genbank	57_37b	-1	reviewed	missense	c.358	p.E120K	1.000	superfamily_Chromo domain-like,HMMSmart_SM00300,HMMPfam_Chromo_shadow,HMMSmart_SM00298	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,HMMSmart_SM00300,HMMPfam_Chromo_shadow	-	no_errors	
CLCA2	9635	genome.wustl.edu	37	1	86904570	86904570	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86904570	86904570	C	A	SNP	CLCA2	NM_006536	human	genbank	57_37b	+1	reviewed	silent	c.984	p.L328	0.788	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973	-	no_errors	
CNTN4	152330	genome.wustl.edu	37	3	3084016	3084016	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	3084016	3084016	T	C	SNP	CNTN4	NM_175607	human	genbank	57_37b	+1	reviewed	silent	c.2421	p.S807	0.929	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
CREM	1390	genome.wustl.edu	37	10	35500300	35500300	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	35500300	35500300	G	T	SNP	CREM	NM_183011	human	genbank	57_37b	+1	reviewed	missense	c.874	p.D292Y	1.000	HMMSmart_SM00338,HMMPfam_bZIP_1	HMMPfam_pKID,HMMSmart_SM00338,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC	-	no_errors	
CROCC	9696	genome.wustl.edu	37	1	17250836	17250836	+	Silent	SNP	A	A	G	rs57174186	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17250836	17250836	A	G	SNP	CROCC	NM_014675	human	genbank	57_37b	+1	validated	silent	c.213	p.T71	0.023	NULL	superfamily_Prefoldin	-		
ETS2	2114	genome.wustl.edu	37	21	40191431	40191431	+	Silent	SNP	T	T	G	rs457705	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40191431	40191431	T	G	SNP	ETS2	NM_005239	human	genbank	57_37b	+1	validated	silent	c.816	p.T272	0.269	NULL	superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-		
FREM2	341640	genome.wustl.edu	37	13	39266380	39266380	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	39266380	39266380	T	A	SNP	FREM2	NM_207361	human	genbank	57_37b	+1	reviewed	missense	c.4899	p.D1633E	0.986	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors	
HPS4	89781	genome.wustl.edu	37	22	26860722	26860722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26860722	26860722	C	A	SNP	HPS4	NM_022081	human	genbank	57_37b	-1	reviewed	missense	c.874	p.A292S	0.000	NULL	NULL	-	no_errors	
KRTAP5-5	439915	genome.wustl.edu	37	11	1651157	1651157	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1651157	1651157	A	G	SNP	KRTAP5-5	NM_001001480	human	genbank	57_37b	+1	validated	silent	c.87	p.G29	0.409	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_2FE2S_FER_1	-	no_errors	
LOC100286994	0	genome.wustl.edu	37	7	36345529	36345530	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	36345529	36345530	GA	-	DEL	LOC100286994	XM_002342716	human	genbank	57_37b	+1	model	frame_shift_del	c.169_170	p.E57fs	0.015:0.024	NULL	superfamily_Ribosomal protein L39e,HMMPfam_Ribosomal_L39	(deletion:cds_exon[36345468,36345546])	no_errors	
LPCAT1	79888	genome.wustl.edu	37	5	1474147	1474147	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	1474147	1474147	A	G	SNP	LPCAT1	NM_024830	human	genbank	57_37b	-1	validated	silent	c.1104	p.G368	0.000	superfamily_SSF47473	PatternScan_EF_HAND_1,superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF47473,HMMSmart_EFh	-	no_errors	
MUC20	200958	genome.wustl.edu	37	3	195452689	195452689	+	Silent	SNP	C	C	T	rs2688541	byCluster;by2Hit2Allele	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195452689	195452689	C	T	SNP	MUC20	NM_152673	human	genbank	57_37b	+1	reviewed	silent	c.702	p.D234	0.000	NULL	NULL	-		
OPN1LW	5956	genome.wustl.edu	37	X	153421964	153421964	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153421964	153421964	G	A	SNP	OPN1LW	NM_020061	human	genbank	57_37b	+1	reviewed	missense	c.940	p.A314T	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_OPSIN	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors	
OR10G9	219870	genome.wustl.edu	37	11	123894588	123894588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123894588	123894588	G	A	SNP	OR10G9	NM_001001953	human	genbank	57_37b	+1	provisional	missense	c.869	p.R290K	1.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PTCHD1	139411	genome.wustl.edu	37	X	23398006	23398006	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23398006	23398006	C	A	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	nonsense	c.650	p.S217*	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
PTCHD1	139411	genome.wustl.edu	37	X	23398006	23398006	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23398006	23398006	C	A	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	nonsense	c.650	p.S217*	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
SLC35B1	10237	genome.wustl.edu	37	17	47780313	47780313	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	47780313	47780313	T	C	SNP	SLC35B1	NM_005827	human	genbank	57_37b	-1	provisional	missense	c.823	p.T275A	1.000	HMMPfam_UAA,superfamily_SSF103481	HMMPfam_UAA,superfamily_SSF103481	-	no_errors	
SLC5A12	159963	genome.wustl.edu	37	11	26720081	26720081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	26720081	26720081	C	T	SNP	SLC5A12	NM_178498	human	genbank	57_37b	-1	validated	missense	c.823	p.A275T	0.999	NULL	HMMPfam_SSF	-	no_errors	
STARD4	134429	genome.wustl.edu	37	5	110835685	110835685	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BJ-01	TCGA-BH-A0BJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	110835685	110835685	T	C	SNP	STARD4	NM_139164	human	genbank	57_37b	-1	provisional	missense	c.517	p.I173V	1.000	superfamily_SSF55961,HMMPfam_START	superfamily_SSF55961,HMMPfam_START	-	no_errors	
