Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB11	8647	genome.wustl.edu	37	2	169869945	169869945	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	169869945	169869945	G	A	SNP	ABCB11	NM_003742	human	genbank	57_37b	-1	reviewed	nonsense	c.226	p.Q76*	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCB11	8647	genome.wustl.edu	37	2	169869945	169869945	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	169869945	169869945	G	A	SNP	ABCB11	NM_003742	human	genbank	57_37b	-1	reviewed	nonsense	c.226	p.Q76*	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC5	10057	genome.wustl.edu	37	3	183665211	183665211	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183665211	183665211	G	C	SNP	ABCC5	NM_005688	human	genbank	57_37b	-1	reviewed	missense	c.3315	p.I1105M	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADCYAP1R1	117	genome.wustl.edu	37	7	31104525	31104525	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31104525	31104525	C	T	SNP	ADCYAP1R1	NM_001118	human	genbank	57_37b	+1	reviewed	silent	c.130	p.L44	0.843	superfamily_Hormone receptor domain (HRM Pfam 02793)	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
ARL10	285598	genome.wustl.edu	37	5	175798850	175798850	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	175798850	175798850	G	A	SNP	ARL10	NM_173664	human	genbank	57_37b	+1	validated	silent	c.687	p.E229	0.001	NULL	superfamily_SSF52540,HMMPfam_Arf	-	no_errors	
C17orf57	124989	genome.wustl.edu	37	17	45405748	45405748	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45405748	45405748	A	T	SNP	C17orf57	NM_152347	human	genbank	57_37b	+1	provisional	missense	c.29	p.Q10L	0.963	NULL	superfamily_EF-hand	-	no_errors	
C1orf38	9473	genome.wustl.edu	37	1	28211957	28211957	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28211957	28211957	A	T	SNP	C1orf38	NM_001105556	human	genbank	57_37b	+1	validated	missense	c.1871	p.D624V	0.000	NULL	NULL	-	no_errors	
CALM1	801	genome.wustl.edu	37	14	90870228	90870228	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90870228	90870228	C	T	SNP	CALM1	NM_006888	human	genbank	57_37b	+1	reviewed	silent	c.201	p.P67	0.184	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
CD300A	11314	genome.wustl.edu	37	17	72469816	72469816	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72469816	72469816	T	C	SNP	CD300A	NM_007261	human	genbank	57_37b	+1	validated	missense	c.182	p.I61T	0.018	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
COX10	1352	genome.wustl.edu	37	17	14110164	14110165	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	14110164	14110165	-	T	INS	COX10	NM_001303	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.966_967	p.P323fs	1.000:1.000	HMMPfam_UbiA	HMMPfam_UbiA,PatternScan_UBIA	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	2975975	2975975	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	2975975	2975975	T	C	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	missense	c.6379	p.T2127A	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
FOLH1	2346	genome.wustl.edu	37	11	49175784	49175784	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	49175784	49175784	T	C	SNP	FOLH1	NM_004476	human	genbank	57_37b	-1	reviewed	silent	c.1884	p.S628	1.000	superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors	
GSK3A	2931	genome.wustl.edu	37	19	42738787	42738787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42738787	42738787	G	A	SNP	GSK3A	NM_019884	human	genbank	57_37b	-1	validated	missense	c.710	p.S237F	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
HEPH	9843	genome.wustl.edu	37	X	65418840	65418840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	65418840	65418840	G	A	SNP	HEPH	NM_138737	human	genbank	57_37b	+1	reviewed	missense	c.1843	p.E615K	0.070	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors	
HIST1H2BC	8347	genome.wustl.edu	37	6	26123793	26123793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26123793	26123793	C	T	SNP	HIST1H2BC	NM_003526	human	genbank	57_37b	-1	reviewed	missense	c.340	p.E114K	1.000	superfamily_Histone-fold,HMMSmart_SM00427,PatternScan_HISTONE_H2B	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors	
HLA-DRB1	3123	genome.wustl.edu	37	6	32552029	32552029	+	Missense_Mutation	SNP	A	A	T	rs17884945	byCluster	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32552029	32552029	A	T	SNP	HLA-DRB1	NM_002124	human	genbank	57_37b	-1	reviewed	missense	c.227	p.F76Y	0.001	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_II_beta	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_II_beta,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC	-		
INTS7	25896	genome.wustl.edu	37	1	212148582	212148582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	212148582	212148582	C	T	SNP	INTS7	NM_015434	human	genbank	57_37b	-1	provisional	missense	c.1741	p.E581K	1.000	NULL	superfamily_ARM repeat	-	no_errors	
LMF1	64788	genome.wustl.edu	37	16	1004605	1004605	+	Silent	SNP	A	A	G	rs12448005	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1004605	1004605	A	G	SNP	LMF1	NM_022773	human	genbank	57_37b	-1	validated	silent	c.255	p.L85	1.000	NULL	HMMPfam_DUF1222	-		
NKIRAS1	28512	genome.wustl.edu	37	3	23934723	23934723	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	23934723	23934723	C	G	SNP	NKIRAS1	NM_020345	human	genbank	57_37b	-1	validated	missense	c.442	p.E148Q	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMPfam_Ras	-	no_errors	
NLRP1	22861	genome.wustl.edu	37	17	5462379	5462379	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5462379	5462379	G	A	SNP	NLRP1	NM_033004	human	genbank	57_37b	-1	reviewed	missense	c.1637	p.T546I	0.814	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1,HMMPfam_CARD	-	no_errors	
OR4M1	441670	genome.wustl.edu	37	14	20248544	20248544	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20248544	20248544	G	A	SNP	OR4M1	NM_001005500	human	genbank	57_37b	+1	provisional	silent	c.63	p.R21	0.575	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PPHLN1	51535	genome.wustl.edu	37	12	42835228	42835228	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	42835228	42835228	A	C	SNP	PPHLN1	NM_016488	human	genbank	57_37b	+1	reviewed	missense	c.1021	p.I341L	1.000	NULL	NULL	-	no_errors	
PSMD13	5719	genome.wustl.edu	37	11	244466	244466	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	244466	244466	G	A	SNP	PSMD13	NM_175932	human	genbank	57_37b	+1	validated	silent	c.312	p.E104	0.998	NULL	HMMPfam_PCI,HMMSmart_PINT,superfamily_SSF46785	-	no_errors	
RP1L1	94137	genome.wustl.edu	37	8	10465798	10465798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	10465798	10465798	C	A	SNP	RP1L1	NM_178857	human	genbank	57_37b	-1	validated	missense	c.5810	p.G1937V	0.000	HMMPfam_S-antigen	superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen	-	no_errors	
SEC13	6396	genome.wustl.edu	37	3	10354287	10354287	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10354287	10354287	C	T	SNP	SEC13	NM_183352	human	genbank	57_37b	-1	reviewed	missense	c.292	p.E98K	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	PatternScan_WD_REPEATS_1,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like	-	no_errors	
SH2D4B	387694	genome.wustl.edu	37	10	82369254	82369254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	82369254	82369254	C	T	SNP	SH2D4B	NM_207372	human	genbank	57_37b	+1	validated	missense	c.932	p.P311L	1.000	NULL	NULL	-	no_errors	
SNX25	83891	genome.wustl.edu	37	4	186188284	186188284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186188284	186188284	G	A	SNP	SNX25	NM_031953	human	genbank	57_37b	+1	validated	missense	c.574	p.D192N	1.000	NULL	HMMPfam_PXA,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_PX,HMMSmart_PX,HMMPfam_PX,HMMPfam_Nexin_C	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149481940	149481940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149481940	149481940	G	T	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.2730	p.W910C	1.000	HMMSmart_SM00214,superfamily_PMP inhibitors	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-	no_errors	
UBL3	5412	genome.wustl.edu	37	13	30351391	30351391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	30351391	30351391	G	A	SNP	UBL3	NM_007106	human	genbank	57_37b	-1	validated	missense	c.37	p.R13C	1.000	superfamily_Ubiquitin-like	superfamily_Ubiquitin-like	-	no_errors	
ZFHX4	79776	genome.wustl.edu	37	8	77766283	77766283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BV-01	TCGA-BH-A0BV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77766283	77766283	G	A	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.6991	p.A2331T	0.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
