Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA7	10347	genome.wustl.edu	37	19	1041509	1041509	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1041509	1041509	G	A	SNP	ABCA7	NM_019112	human	genbank	57_37b	+1	reviewed	missense	c.67	p.V23I	0.679	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACRBP	84519	genome.wustl.edu	37	12	6753326	6753326	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6753326	6753326	G	T	SNP	ACRBP	NM_032489	human	genbank	57_37b	-1	reviewed	nonsense	c.921	p.Y307*	0.893	NULL	HMMPfam_PBP_sp32,superfamily_SSF100895,HMMSmart_KAZAL	-	no_errors	
ACRBP	84519	genome.wustl.edu	37	12	6753326	6753326	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6753326	6753326	G	T	SNP	ACRBP	NM_032489	human	genbank	57_37b	-1	reviewed	nonsense	c.921	p.Y307*	0.893	NULL	HMMPfam_PBP_sp32,superfamily_SSF100895,HMMSmart_KAZAL	-	no_errors	
AGBL3	340351	genome.wustl.edu	37	7	134800290	134800290	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	134800290	134800290	A	G	SNP	AGBL3	NM_178563	human	genbank	57_37b	+1	provisional	missense	c.2269	p.S757G	0.002	NULL	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	-	no_errors	
AGPAT5	55326	genome.wustl.edu	37	8	6590094	6590097	+	Frame_Shift_Del	DEL	TATG	TATG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TATG	TATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	6590094	6590097	TATG	-	DEL	AGPAT5	NM_018361	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.418_421	p.Y140fs	1.000:1.000:0.996:1.000	superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC	superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC	(deletion:cds_exon[6590082,6590171])	no_errors	
AGPAT5	55326	genome.wustl.edu	37	8	6590094	6590097	+	Frame_Shift_Del	DEL	TATG	TATG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TATG	TATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	6590094	6590097	TATG	-	DEL	AGPAT5	NM_018361	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.418_421	p.Y140fs	1.000:1.000:0.996:1.000	superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC	superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC	(deletion:cds_exon[6590082,6590171])	no_errors	
ALDH8A1	64577	genome.wustl.edu	37	6	135263624	135263639	+	Frame_Shift_Del	DEL	AGGCTGGAGGAAGCGA	AGGCTGGAGGAAGCGA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	AGGCTGGAGGAAGCGA	AGGCTGGAGGAAGCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135263624	135263639	AGGCTGGAGGAAGCGA	-	DEL	ALDH8A1	NM_022568	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.365_350	p.F117fs	1.000:1.000:0.996:0.761:0.521:0.488:0.998:0.995:0.864:1.000:0.999:0.005:1.000:1.000:0.921:1.000	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	(deletion:cds_exon[135263547,135263702])	no_errors	
ALDH8A1	64577	genome.wustl.edu	37	6	135263624	135263639	+	Frame_Shift_Del	DEL	AGGCTGGAGGAAGCGA	AGGCTGGAGGAAGCGA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	AGGCTGGAGGAAGCGA	AGGCTGGAGGAAGCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135263624	135263639	AGGCTGGAGGAAGCGA	-	DEL	ALDH8A1	NM_022568	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.365_350	p.F117fs	1.000:1.000:0.996:0.761:0.521:0.488:0.998:0.995:0.864:1.000:0.999:0.005:1.000:1.000:0.921:1.000	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	(deletion:cds_exon[135263547,135263702])	no_errors	
AMPH	273	genome.wustl.edu	37	7	38424430	38424430	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	38424430	38424430	G	A	SNP	AMPH	NM_001635	human	genbank	57_37b	-1	reviewed	missense	c.2077	p.R693C	0.998	superfamily_SH3-domain,HMMSmart_SM00326	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
APOBEC2	10930	genome.wustl.edu	37	6	41029073	41029073	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41029073	41029073	G	T	SNP	APOBEC2	NM_006789	human	genbank	57_37b	+1	validated	silent	c.138	p.R46	0.998	HMMPfam_APOBEC_N	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like,HMMPfam_APOBEC_C	-	no_errors	
ARHGAP23	57636	genome.wustl.edu	37	17	36623524	36623524	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36623524	36623524	G	T	SNP	ARHGAP23	NM_020876	human	genbank	57_37b	+1	provisional	missense	c.1318	p.A440S	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ASPRV1	151516	genome.wustl.edu	37	2	70188292	70188300	+	In_Frame_Del	DEL	CCCCAGGGA	CCCCAGGGA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	CCCCAGGGA	CCCCAGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	70188292	70188300	CCCCAGGGA	-	DEL	ASPRV1	NM_152792	human	genbank	57_37b	-1	validated	in_frame_del	c.529_521	p.VPG174in_frame_del	0.000:0.000:0.000:0.000:0.000:0.003:0.000:0.000:0.001	NULL	superfamily_Pept_Aspartic,PatternScan_ASP_PROTEASE	(deletion:cds_exon[70187789,70188820])	no_errors	
ASPRV1	151516	genome.wustl.edu	37	2	70188292	70188300	+	In_Frame_Del	DEL	CCCCAGGGA	CCCCAGGGA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	CCCCAGGGA	CCCCAGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	70188292	70188300	CCCCAGGGA	-	DEL	ASPRV1	NM_152792	human	genbank	57_37b	-1	validated	in_frame_del	c.529_521	p.VPG174in_frame_del	0.000:0.000:0.000:0.000:0.000:0.003:0.000:0.000:0.001	NULL	superfamily_Pept_Aspartic,PatternScan_ASP_PROTEASE	(deletion:cds_exon[70187789,70188820])	no_errors	
ATP11A	23250	genome.wustl.edu	37	13	113512489	113512489	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113512489	113512489	C	A	SNP	ATP11A	NM_032189	human	genbank	57_37b	+1	reviewed	missense	c.2552	p.A851D	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
BAIAP3	8938	genome.wustl.edu	37	16	1394620	1394620	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1394620	1394620	C	T	SNP	BAIAP3	NM_003933	human	genbank	57_37b	+1	reviewed	missense	c.1783	p.P595S	0.000	HMMPfam_DUF1041	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
BAZ1A	11177	genome.wustl.edu	37	14	35245193	35245193	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35245193	35245193	A	T	SNP	BAZ1A	NM_013448	human	genbank	57_37b	-1	validated	nonsense	c.2765	p.L922*	1.000	NULL	HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BAZ1A	11177	genome.wustl.edu	37	14	35245193	35245193	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35245193	35245193	A	T	SNP	BAZ1A	NM_013448	human	genbank	57_37b	-1	validated	nonsense	c.2765	p.L922*	1.000	NULL	HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BCL9	607	genome.wustl.edu	37	1	147092549	147092550	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147092549	147092550	TG	-	DEL	BCL9	NM_004326	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2588_2589	p.L863fs	1.000:1.000	NULL	NULL	(deletion:cds_exon[147090622,147092863])	no_errors	
BCL9	607	genome.wustl.edu	37	1	147092549	147092550	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147092549	147092550	TG	-	DEL	BCL9	NM_004326	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2588_2589	p.L863fs	1.000:1.000	NULL	NULL	(deletion:cds_exon[147090622,147092863])	no_errors	
BTBD17	388419	genome.wustl.edu	37	17	72357932	72357932	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72357932	72357932	A	C	SNP	BTBD17	NM_001080466	human	genbank	57_37b	-1	provisional	silent	c.27	p.P9	0.012	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK	-	no_errors	
CACNA1B	774	genome.wustl.edu	37	9	141012420	141012420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	141012420	141012420	A	G	SNP	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	missense	c.5800	p.K1934E	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CACNA1I	8911	genome.wustl.edu	37	22	40066845	40066845	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40066845	40066845	C	G	SNP	CACNA1I	NM_021096	human	genbank	57_37b	+1	reviewed	missense	c.4425	p.H1475Q	0.759	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
CAPN6	827	genome.wustl.edu	37	X	110496378	110496378	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	110496378	110496378	G	A	SNP	CAPN6	NM_014289	human	genbank	57_37b	-1	reviewed	missense	c.364	p.H122Y	1.000	superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
CLDN15	24146	genome.wustl.edu	37	7	100876136	100876136	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100876136	100876136	C	G	SNP	CLDN15	NM_014343	human	genbank	57_37b	-1	provisional	missense	c.442	p.D148H	0.994	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors	
CRTC2	200186	genome.wustl.edu	37	1	153923850	153923850	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153923850	153923850	C	T	SNP	CRTC2	NM_181715	human	genbank	57_37b	-1	provisional	silent	c.1290	p.V430	1.000	NULL	NULL	-	no_errors	
CSMD2	114784	genome.wustl.edu	37	1	34276437	34276437	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34276437	34276437	G	T	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	silent	c.1233	p.G411	0.980	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors	
CUL7	9820	genome.wustl.edu	37	6	43016268	43016268	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43016268	43016268	T	A	SNP	CUL7	NM_014780	human	genbank	57_37b	-1	reviewed	missense	c.1865	p.Q622L	0.276	NULL	PatternScan_CULLIN_1,superfamily_Gal_bind_like,HMMPfam_APC10,HMMPfam_Cullin,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors	
DDX55	57696	genome.wustl.edu	37	12	124103295	124103295	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124103295	124103295	G	C	SNP	DDX55	NM_020936	human	genbank	57_37b	+1	reviewed	missense	c.1244	p.R415T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
DNAH12	201625	genome.wustl.edu	37	3	57401248	57401248	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57401248	57401248	A	G	SNP	DNAH12	NM_178504	human	genbank	57_37b	-1	validated	missense	c.5701	p.Y1901H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DNAH9	1770	genome.wustl.edu	37	17	11701070	11701070	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11701070	11701070	G	C	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	missense	c.8380	p.V2794L	0.989	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors	
DNASE1L2	1775	genome.wustl.edu	37	16	2287303	2287303	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2287303	2287303	G	A	SNP	DNASE1L2	NM_001374	human	genbank	57_37b	+1	validated	splice_site	c.317+1	e3+1	1.000	-	-	-	no_errors	
DOCK11	139818	genome.wustl.edu	37	X	117782984	117782984	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117782984	117782984	C	T	SNP	DOCK11	NM_144658	human	genbank	57_37b	+1	validated	missense	c.4475	p.S1492L	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto	-	no_errors	
DPY19L3	147991	genome.wustl.edu	37	19	32928151	32928151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	32928151	32928151	G	A	SNP	DPY19L3	NM_207325	human	genbank	57_37b	+1	validated	missense	c.502	p.A168T	0.979	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors	
DUOX1	53905	genome.wustl.edu	37	15	45428084	45428084	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	45428084	45428084	C	G	SNP	DUOX1	NM_017434	human	genbank	57_37b	+1	reviewed	missense	c.802	p.P268A	1.000	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6	-	no_errors	
EIF2C3	192669	genome.wustl.edu	37	1	36432633	36432637	+	Frame_Shift_Del	DEL	GAAGT	GAAGT	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GAAGT	GAAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36432633	36432637	GAAGT	-	DEL	EIF2C3	NM_024852	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.269_273	p.R90fs	1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_DUF1785,superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi	(deletion:cds_exon[36432556,36432676])	no_errors	
EIF2C3	192669	genome.wustl.edu	37	1	36432633	36432637	+	Frame_Shift_Del	DEL	GAAGT	GAAGT	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GAAGT	GAAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36432633	36432637	GAAGT	-	DEL	EIF2C3	NM_024852	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.269_273	p.R90fs	1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_DUF1785,superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi	(deletion:cds_exon[36432556,36432676])	no_errors	
ENPP2	5168	genome.wustl.edu	37	8	120569768	120569768	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	120569768	120569768	T	C	SNP	ENPP2	NM_006209	human	genbank	57_37b	-1	reviewed	missense	c.2741	p.E914G	1.000	superfamily_His-Me finger endonucleases	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS	-	no_errors	
ENSG00000173213	0	genome.wustl.edu	37	18	48227	48228	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	48227	48228	TG	-	DEL	ENSG00000173213	ENST00000308911	human	ensembl	57_37b	-1	known	frame_shift_del	c.498_497	p.T166fs	1.000:1.000	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	(deletion:cds_exon[47390,48447])	no_errors	
ERN1	2081	genome.wustl.edu	37	17	62133220	62133221	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62133220	62133221	-	GCT	INS	ERN1	NM_001433	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.1487_1486	p.496in_frame_insQ	1.000:0.999	NULL	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors	
FAM177B	400823	genome.wustl.edu	37	1	222920385	222920385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	222920385	222920385	G	A	SNP	FAM177B	NM_207468	human	genbank	57_37b	+1	validated	missense	c.203	p.R68Q	0.530	NULL	NULL	-	no_errors	
FFAR3	2865	genome.wustl.edu	37	19	35862464	35862464	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35862464	35862464	T	C	SNP	FFAR3	ENST00000246538	human	ensembl	57_37b	+1	known	missense	c.203	p.L68P	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
FLJ46321	389763	genome.wustl.edu	37	9	84608347	84608347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	84608347	84608347	C	T	SNP	FLJ46321	NM_001001670	human	genbank	57_37b	+1	validated	missense	c.2962	p.P988S	0.002	NULL	NULL	-	no_errors	
FRAS1	80144	genome.wustl.edu	37	4	79236807	79236807	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79236807	79236807	G	T	SNP	FRAS1	NM_025074	human	genbank	57_37b	+1	reviewed	nonsense	c.1738	p.E580*	0.002	superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors	
FRAS1	80144	genome.wustl.edu	37	4	79236807	79236807	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79236807	79236807	G	T	SNP	FRAS1	NM_025074	human	genbank	57_37b	+1	reviewed	nonsense	c.1738	p.E580*	0.002	superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors	
GORAB	92344	genome.wustl.edu	37	1	170521402	170521402	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170521402	170521402	A	T	SNP	GORAB	NM_152281	human	genbank	57_37b	+1	reviewed	silent	c.984	p.P328	0.105	NULL	NULL	-	no_errors	
GPR77	27202	genome.wustl.edu	37	19	47845035	47845035	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47845035	47845035	A	C	SNP	GPR77	NM_018485	human	genbank	57_37b	+1	provisional	missense	c.979	p.T327P	0.002	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
GRPEL2	134266	genome.wustl.edu	37	5	148730786	148730786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	148730786	148730786	G	A	SNP	GRPEL2	NM_152407	human	genbank	57_37b	+1	validated	missense	c.619	p.G207S	1.000	HMMPfam_GrpE,superfamily_GrpE_head,PatternScan_GRPE	HMMPfam_GrpE,superfamily_GrpE_head,PatternScan_GRPE	-	no_errors	
HGC6.3	0	genome.wustl.edu	37	6	168377291	168377291	+	Silent	SNP	C	C	T	rs61743848	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168377291	168377291	C	T	SNP	HGC6.3	NM_001129895	human	genbank	57_37b	-1	predicted	silent	c.42	p.G14	0.013	NULL	NULL	-		
HSP90AB4P	664618	genome.wustl.edu	37	15	58983416	58983416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	58983416	58983416	A	T	SNP	HSP90AB4P	ENST00000380522	human	ensembl	57_37b	-1	known	missense	c.1404	p.F468L	1.000	HMMPfam_HSP90	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942	-	no_errors	
JARID2	3720	genome.wustl.edu	37	6	15496730	15496730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	15496730	15496730	G	A	SNP	JARID2	NM_004973	human	genbank	57_37b	+1	reviewed	missense	c.1274	p.R425Q	1.000	NULL	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2	-	no_errors	
KRTAP5-4	387267	genome.wustl.edu	37	11	1643225	1643225	+	Silent	SNP	G	G	A	rs28421796	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1643225	1643225	G	A	SNP	KRTAP5-4	NM_001012709	human	genbank	57_37b	-1	provisional	silent	c.99	p.S33	0.541	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1,PatternScan_TNFR_NGFR_1	-		
LAMA1	284217	genome.wustl.edu	37	18	7049147	7049147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	7049147	7049147	G	A	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	missense	c.698	p.T233M	1.000	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LGALS12	85329	genome.wustl.edu	37	11	63276064	63276064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63276064	63276064	G	A	SNP	LGALS12	NM_001142535	human	genbank	57_37b	+1	validated	missense	c.175	p.A59T	0.507	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	-	no_errors	
LGALS4	3960	genome.wustl.edu	37	19	39299504	39299504	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39299504	39299504	C	A	SNP	LGALS4	NM_006149	human	genbank	57_37b	-1	reviewed	missense	c.219	p.K73N	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	-	no_errors	
LHB	3972	genome.wustl.edu	37	19	49519883	49519883	+	Missense_Mutation	SNP	A	A	G	rs34349826	byCluster;byFrequency	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49519883	49519883	A	G	SNP	LHB	NM_000894	human	genbank	57_37b	-1	reviewed	missense	c.104	p.I35T	0.993	HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501	HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2	-		
LHB	3972	genome.wustl.edu	37	19	49519905	49519905	+	Missense_Mutation	SNP	A	A	G	rs1800447	byCluster;byFrequency;byHapMap	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49519905	49519905	A	G	SNP	LHB	NM_000894	human	genbank	57_37b	-1	reviewed	missense	c.82	p.W28R	0.111	HMMSmart_GHB,HMMPfam_Cys_knot	HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_SSF57501	-		
LOC100287042	0	genome.wustl.edu	37	17	73268740	73268742	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73268740	73268742	GGA	-	DEL	LOC100287042	XM_002343543	human	genbank	57_37b	+1	model	in_frame_del	c.616_618	p.G206in_frame_del	0.004:0.002:0.000	NULL	NULL	(deletion:cds_exon[73268125,73268838])	no_errors	
LOC100288413	0	genome.wustl.edu	37	4	53610742	53610742	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	53610742	53610742	G	A	SNP	LOC100288413	XM_002342451	human	genbank	57_37b	-1	model	nonsense	c.946	p.R316*	0.025	NULL	NULL	-	no_errors	
LOC100288413	0	genome.wustl.edu	37	4	53610742	53610742	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	53610742	53610742	G	A	SNP	LOC100288413	XM_002342451	human	genbank	57_37b	-1	model	nonsense	c.946	p.R316*	0.025	NULL	NULL	-	no_errors	
LOC400406	400406	genome.wustl.edu	37	15	78278385	78278385	+	RNA	SNP	C	C	T	rs112133985	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78278385	78278385	C	T	SNP	LOC400406	XR_042358	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
MCC	4163	genome.wustl.edu	37	5	112824043	112824045	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GCC	GCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	112824043	112824045	GCC	-	DEL	MCC	NM_001085377	human	genbank	57_37b	-1	reviewed	in_frame_del	c.69_67	p.G23in_frame_del	0.731:0.740:0.741	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_MCC-bdg_PDZ	(deletion:cds_exon[112823942,112824111])	no_errors	
MED12	9968	genome.wustl.edu	37	X	70356831	70356835	+	Frame_Shift_Del	DEL	AGGCA	AGGCA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	AGGCA	AGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70356831	70356835	AGGCA	-	DEL	MED12	NM_005120	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.5503_5507	p.Q1836fs	0.995:0.997:0.997:1.000:0.998	NULL	HMMPfam_Med12	(deletion:cds_exon[70356729,70356879])	no_errors	
MED12	9968	genome.wustl.edu	37	X	70356831	70356835	+	Frame_Shift_Del	DEL	AGGCA	AGGCA	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	AGGCA	AGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70356831	70356835	AGGCA	-	DEL	MED12	NM_005120	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.5503_5507	p.Q1836fs	0.995:0.997:0.997:1.000:0.998	NULL	HMMPfam_Med12	(deletion:cds_exon[70356729,70356879])	no_errors	
MICAL3	57553	genome.wustl.edu	37	22	18354628	18354628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18354628	18354628	C	T	SNP	MICAL3	NM_015241	human	genbank	57_37b	-1	provisional	silent	c.2403	p.S801	0.069	HMMSmart_SM00132,HMMPfam_LIM	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MIR211	0	genome.wustl.edu	37	15	31357292	31357292	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	31357292	31357292	A	G	SNP	MIR211	ENST00000384969	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151871273	151871273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151871273	151871273	C	T	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.9317	p.G3106D	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MSH3	4437	genome.wustl.edu	37	5	80064756	80064756	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	80064756	80064756	T	A	SNP	MSH3	NM_002439	human	genbank	57_37b	+1	reviewed	missense	c.2187	p.H729Q	1.000	superfamily_DNA repair protein MutS domain III,HMMSmart_SM00533	superfamily_DNA repair protein MutS domain I,HMMPfam_MutS_I,superfamily_DNA repair protein MutS domain II,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA repair protein MutS domain III,HMMSmart_SM00533,HMMPfam_MutS_V,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00534,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors	
MUC12	10071	genome.wustl.edu	37	7	100634705	100634705	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100634705	100634705	T	A	SNP	MUC12	ENST00000379442	human	ensembl	57_37b	+1	known	silent	c.1290	p.T430	0.001	NULL	PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
NHS	4810	genome.wustl.edu	37	X	17750565	17750565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	17750565	17750565	C	T	SNP	NHS	NM_198270	human	genbank	57_37b	+1	reviewed	missense	c.4874	p.S1625F	1.000	NULL	NULL	-	no_errors	
NLGN3	54413	genome.wustl.edu	37	X	70386913	70386913	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70386913	70386913	T	G	SNP	NLGN3	NM_018977	human	genbank	57_37b	+1	reviewed	silent	c.906	p.A302	0.995	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
NT5C1B	93034	genome.wustl.edu	37	2	18765450	18765450	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	18765450	18765450	T	A	SNP	NT5C1B	NM_001002006	human	genbank	57_37b	-1	validated	missense	c.975	p.K325N	1.000	NULL	HMMPfam_5-nucleotidase	-	no_errors	
ODZ3	55714	genome.wustl.edu	37	4	183696086	183696086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	183696086	183696086	G	A	SNP	ODZ3	NM_001080477	human	genbank	57_37b	+1	provisional	missense	c.5084	p.S1695N	1.000	superfamily_ConA_like_lec_gl	HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat	-	no_errors	
OR1J1	347168	genome.wustl.edu	37	9	125239431	125239431	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125239431	125239431	A	G	SNP	OR1J1	NM_001004451	human	genbank	57_37b	-1	provisional	missense	c.775	p.Y259H	0.147	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2L13	284521	genome.wustl.edu	37	1	248263169	248263169	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248263169	248263169	T	C	SNP	OR2L13	NM_175911	human	genbank	57_37b	+1	provisional	silent	c.492	p.H164	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PEG3	5178	genome.wustl.edu	37	19	57335971	57335971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57335971	57335971	G	T	SNP	PEG3	NM_006210	human	genbank	57_37b	-1	reviewed	missense	c.53	p.P18Q	0.540	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
PKHD1	5314	genome.wustl.edu	37	6	51484286	51484286	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	51484286	51484286	T	A	SNP	PKHD1	NM_138694	human	genbank	57_37b	-1	reviewed	missense	c.11818	p.N3940Y	0.001	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors	
PMS1	5378	genome.wustl.edu	37	2	190718672	190718672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190718672	190718672	G	A	SNP	PMS1	NM_000534	human	genbank	57_37b	+1	reviewed	missense	c.830	p.R277Q	1.000	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
PNPLA3	80339	genome.wustl.edu	37	22	44340631	44340635	+	Frame_Shift_Del	DEL	ACAGG	ACAGG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	ACAGG	ACAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	44340631	44340635	ACAGG	-	DEL	PNPLA3	NM_025225	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1173_1177	p.Q392fs	0.000:0.000:0.000:0.000:0.000	NULL	superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	(deletion:cds_exon[44340571,44340675])	no_errors	
PNPLA3	80339	genome.wustl.edu	37	22	44340631	44340635	+	Frame_Shift_Del	DEL	ACAGG	ACAGG	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	ACAGG	ACAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	44340631	44340635	ACAGG	-	DEL	PNPLA3	NM_025225	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1173_1177	p.Q392fs	0.000:0.000:0.000:0.000:0.000	NULL	superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	(deletion:cds_exon[44340571,44340675])	no_errors	
PNPLA3	80339	genome.wustl.edu	37	22	44340638	44340639	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	44340638	44340639	TT	-	DEL	PNPLA3	NM_025225	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1180_1181	p.F394fs	0.000:0.000	NULL	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	(deletion:cds_exon[44340571,44340675])	no_errors	
PNPLA3	80339	genome.wustl.edu	37	22	44340638	44340639	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	44340638	44340639	TT	-	DEL	PNPLA3	NM_025225	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1180_1181	p.F394fs	0.000:0.000	NULL	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	(deletion:cds_exon[44340571,44340675])	no_errors	
PNPLA3	80339	genome.wustl.edu	37	22	44340640	44340641	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	44340640	44340641	-	A	INS	PNPLA3	NM_025225	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1182_1183	p.T394fs	0.000:0.000	NULL	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	-	no_errors	
POLQ	10721	genome.wustl.edu	37	3	121207554	121207554	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121207554	121207554	A	G	SNP	POLQ	NM_199420	human	genbank	57_37b	-1	validated	silent	c.4224	p.D1408	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482,PatternScan_DNA_POLYMERASE_A	-	no_errors	
POLR1C	9533	genome.wustl.edu	37	6	43487161	43487161	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43487161	43487161	C	T	SNP	POLR1C	NM_203290	human	genbank	57_37b	+1	validated	nonsense	c.232	p.R78*	0.105	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662,PatternScan_RNA_POL_D_30KD	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662,PatternScan_RNA_POL_D_30KD,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMPfam_RNA_pol_A_bac	-	no_errors	
POLR1C	9533	genome.wustl.edu	37	6	43487161	43487161	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43487161	43487161	C	T	SNP	POLR1C	NM_203290	human	genbank	57_37b	+1	validated	nonsense	c.232	p.R78*	0.105	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662,PatternScan_RNA_POL_D_30KD	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662,PatternScan_RNA_POL_D_30KD,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMPfam_RNA_pol_A_bac	-	no_errors	
PPFIA4	8497	genome.wustl.edu	37	1	203030799	203030799	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203030799	203030799	G	T	SNP	PPFIA4	NM_015053	human	genbank	57_37b	+1	validated	missense	c.1349	p.W450L	1.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors	
PPM1J	333926	genome.wustl.edu	37	1	113253093	113253093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	113253093	113253093	A	G	SNP	PPM1J	NM_005167	human	genbank	57_37b	-1	reviewed	silent	c.1359	p.N453	1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	-	no_errors	
PXDN	7837	genome.wustl.edu	37	2	1667407	1667407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1667407	1667407	C	A	SNP	PXDN	NM_012293	human	genbank	57_37b	-1	validated	missense	c.1537	p.V513F	0.991	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors	
QRICH2	84074	genome.wustl.edu	37	17	74289101	74289101	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74289101	74289101	A	C	SNP	QRICH2	NM_032134	human	genbank	57_37b	-1	provisional	missense	c.1209	p.D403E	0.000	NULL	NULL	-	no_errors	
RB1	5925	genome.wustl.edu	37	13	48881488	48881489	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48881488	48881489	-	AG	INS	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.210_211	p.A73fs	1.000:1.000	NULL	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors	
RPGR	6103	genome.wustl.edu	37	X	38145532	38145534	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38145532	38145534	TCC	-	DEL	RPGR	NM_001034853	human	genbank	57_37b	-1	reviewed	in_frame_del	c.2720_2718	p.E907in_frame_del	0.994:0.977:0.978	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	(deletion:cds_exon[38144793,38146498])	no_errors	
RPS6KA3	6197	genome.wustl.edu	37	X	20195139	20195139	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	20195139	20195139	G	C	SNP	RPS6KA3	NM_004586	human	genbank	57_37b	-1	reviewed	missense	c.909	p.F303L	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
SARM1	23098	genome.wustl.edu	37	17	26723044	26723044	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26723044	26723044	A	-	DEL	SARM1	ENST00000379061	human	ensembl	57_37b	+1	known	frame_shift_del	c.2038	p.K680fs	1.000	superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255	superfamily_ARM repeat,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255	(deletion:cds_exon[26722924,26723045])	no_errors	
SARM1	23098	genome.wustl.edu	37	17	26723044	26723044	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26723044	26723044	A	-	DEL	SARM1	ENST00000379061	human	ensembl	57_37b	+1	known	frame_shift_del	c.2038	p.K680fs	1.000	superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255	superfamily_ARM repeat,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255	(deletion:cds_exon[26722924,26723045])	no_errors	
SDHA	6389	genome.wustl.edu	37	5	236634	236634	+	Missense_Mutation	SNP	G	G	A	rs115253287	by1000genomes	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	236634	236634	G	A	SNP	SDHA	NM_004168	human	genbank	57_37b	+1	reviewed	missense	c.1352	p.R451H	0.999	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_2	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_2,PatternScan_FRD_SDH_FAD_BINDING,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein catalytic domain,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain,HMMPfam_Succ_DH_flav_C	-		
SEC23B	10483	genome.wustl.edu	37	20	18507096	18507096	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18507096	18507096	G	C	SNP	SEC23B	NM_006363	human	genbank	57_37b	+1	reviewed	missense	c.914	p.G305A	1.000	superfamily_SSF81995,HMMPfam_Sec23_trunk,superfamily_SSF53300	superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin	-	no_errors	
SIRT7	51547	genome.wustl.edu	37	17	79872286	79872286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79872286	79872286	C	A	SNP	SIRT7	NM_016538	human	genbank	57_37b	-1	reviewed	missense	c.700	p.D234Y	1.000	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	-	no_errors	
SLC34A2	10568	genome.wustl.edu	37	4	25678170	25678181	+	In_Frame_Del	DEL	GTGCTGCCGCGC	GTGCTGCCGCGC	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GTGCTGCCGCGC	GTGCTGCCGCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25678170	25678181	GTGCTGCCGCGC	-	DEL	SLC34A2	NM_006424	human	genbank	57_37b	+1	validated	in_frame_del	c.1872_1883	p.RACC627in_frame_del	0.187:0.979:1.000:1.000:1.000:1.000:1.000:0.999:0.982:0.007:0.000:0.030	NULL	HMMPfam_Na_Pi_cotrans	(deletion:cds_exon[25677757,25678371])	no_errors	
SLC34A2	10568	genome.wustl.edu	37	4	25678170	25678181	+	In_Frame_Del	DEL	GTGCTGCCGCGC	GTGCTGCCGCGC	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GTGCTGCCGCGC	GTGCTGCCGCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25678170	25678181	GTGCTGCCGCGC	-	DEL	SLC34A2	NM_006424	human	genbank	57_37b	+1	validated	in_frame_del	c.1872_1883	p.RACC627in_frame_del	0.187:0.979:1.000:1.000:1.000:1.000:1.000:0.999:0.982:0.007:0.000:0.030	NULL	HMMPfam_Na_Pi_cotrans	(deletion:cds_exon[25677757,25678371])	no_errors	
SLC34A2	10568	genome.wustl.edu	37	4	25678181	25678181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25678181	25678181	C	T	SNP	SLC34A2	NM_006424	human	genbank	57_37b	+1	validated	missense	c.1883	p.A628V	0.030	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors	
SPTAN1	6709	genome.wustl.edu	37	9	131378115	131378115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131378115	131378115	A	G	SNP	SPTAN1	NM_001130438	human	genbank	57_37b	+1	validated	missense	c.5353	p.I1785V	1.000	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen	-	no_errors	
TBCK	93627	genome.wustl.edu	37	4	107230071	107230071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	107230071	107230071	G	A	SNP	TBCK	NM_033115	human	genbank	57_37b	-1	validated	missense	c.47	p.A16V	1.000	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC,superfamily_Rhodanese-like,HMMSmart_RHOD,HMMPfam_Rhodanese	-	no_errors	
TMEM229A	0	genome.wustl.edu	37	7	123672457	123672462	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	GCTGCT	GCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	123672457	123672462	GCTGCT	-	DEL	TMEM229A	NM_001136002	human	genbank	57_37b	-1	validated	in_frame_del	c.601_596	p.QQ199in_frame_del	0.000:0.000:0.001:0.388:0.445:0.475	NULL	NULL	(deletion:cds_exon[123671915,123673057])	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579312	7579312	+	Silent	SNP	C	C	G	rs55863639	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579312	7579312	C	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	silent	c.375	p.T125	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TPO	7173	genome.wustl.edu	37	2	1426879	1426879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1426879	1426879	G	A	SNP	TPO	NM_000547	human	genbank	57_37b	+1	reviewed	missense	c.157	p.A53T	0.006	NULL	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
TRPC6	7225	genome.wustl.edu	37	11	101374902	101374902	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	101374902	101374902	C	T	SNP	TRPC6	NM_004621	human	genbank	57_37b	-1	reviewed	silent	c.798	p.S266	0.992	HMMPfam_TRP_2	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors	
TRPS1	7227	genome.wustl.edu	37	8	116430602	116430602	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	116430602	116430602	C	G	SNP	TRPS1	NM_014112	human	genbank	57_37b	-1	reviewed	missense	c.2779	p.G927R	1.000	superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	HMMSmart_ZnF_C2H2,superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
TSC22D3	1831	genome.wustl.edu	37	X	107018552	107018552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107018552	107018552	C	G	SNP	TSC22D3	NM_198057	human	genbank	57_37b	-1	reviewed	missense	c.98	p.S33T	0.140	NULL	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors	
TTC29	83894	genome.wustl.edu	37	4	147741361	147741361	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	147741361	147741361	T	A	SNP	TTC29	NM_031956	human	genbank	57_37b	-1	validated	missense	c.1017	p.K339N	0.624	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179498292	179498292	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179498292	179498292	T	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.35090	p.D11697V	1.000	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
WDFY3	23001	genome.wustl.edu	37	4	85748077	85748077	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	85748077	85748077	C	G	SNP	WDFY3	NM_014991	human	genbank	57_37b	-1	reviewed	silent	c.1014	p.L338	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cyclin-like,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
WNK1	65125	genome.wustl.edu	37	12	862832	862832	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	862832	862832	C	G	SNP	WNK1	NM_018979	human	genbank	57_37b	+1	validated	missense	c.101	p.S34C	0.981	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ZNF384	171017	genome.wustl.edu	37	12	6788134	6788134	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6788134	6788134	C	T	SNP	ZNF384	NM_001135734	human	genbank	57_37b	-1	reviewed	silent	c.282	p.P94	0.886	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF730	0	genome.wustl.edu	37	19	23328798	23328798	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23328798	23328798	G	-	DEL	ZNF730	XM_001719792	human	genbank	57_37b	+1	model	frame_shift_del	c.1078	p.G360fs	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[23328073,23329302])	no_errors	
ZNF780B	163131	genome.wustl.edu	37	19	40541342	40541342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BW-01	TCGA-BH-A0BW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40541342	40541342	C	T	SNP	ZNF780B	NM_001005851	human	genbank	57_37b	-1	validated	missense	c.1424	p.C475Y	0.931	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
