Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC4	10257	genome.wustl.edu	37	13	95696580	95696580	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	95696580	95696580	G	T	SNP	ABCC4	NM_005845	human	genbank	57_37b	-1	reviewed	missense	c.3569	p.A1190E	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADAMTS18	170692	genome.wustl.edu	37	16	77353947	77353947	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77353947	77353947	G	A	SNP	ADAMTS18	NM_199355	human	genbank	57_37b	-1	reviewed	silent	c.2331	p.I777	0.842	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors	
ANK1	286	genome.wustl.edu	37	8	41553928	41553928	+	Silent	SNP	C	C	G	rs504574	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41553928	41553928	C	G	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	silent	c.3036	p.L1012	1.000	HMMPfam_ZU5,HMMSmart_ZU5	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-		
ANKRD6	22881	genome.wustl.edu	37	6	90276715	90276715	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90276715	90276715	T	C	SNP	ANKRD6	NM_014942	human	genbank	57_37b	+1	validated	missense	c.20	p.V7A	1.000	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors	
ARRDC2	27106	genome.wustl.edu	37	19	18119536	18119536	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18119536	18119536	G	A	SNP	ARRDC2	NM_015683	human	genbank	57_37b	+1	validated	silent	c.291	p.T97	0.319	superfamily_E set domains,HMMPfam_Arrestin_N	superfamily_E set domains,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C	-	no_errors	
BSND	7809	genome.wustl.edu	37	1	55474123	55474123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55474123	55474123	C	T	SNP	BSND	NM_057176	human	genbank	57_37b	+1	reviewed	missense	c.785	p.A262V	0.010	NULL	NULL	-	no_errors	
C19orf77	284422	genome.wustl.edu	37	19	3478909	3478909	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3478909	3478909	T	A	SNP	C19orf77	NM_001136503	human	genbank	57_37b	-1	validated	missense	c.86	p.K29M	0.971	NULL	NULL	-	no_errors	
C1orf112	55732	genome.wustl.edu	37	1	169770035	169770035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169770035	169770035	A	T	SNP	C1orf112	ENST00000456684	human	ensembl	57_37b	+1	known	missense	c.163	p.I55F	0.828	NULL	NULL	-	no_errors	
CBX8	57332	genome.wustl.edu	37	17	77768654	77768654	+	Missense_Mutation	SNP	C	C	A	rs4889891	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	77768654	77768654	C	A	SNP	CBX8	NM_020649	human	genbank	57_37b	-1	provisional	missense	c.950	p.G317V	0.006	NULL	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1	-		
CCDC135	84229	genome.wustl.edu	37	16	57760088	57760088	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57760088	57760088	C	T	SNP	CCDC135	NM_032269	human	genbank	57_37b	+1	validated	missense	c.1867	p.R623C	0.993	NULL	NULL	-	no_errors	
CDC5L	988	genome.wustl.edu	37	6	44413549	44413549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44413549	44413549	G	A	SNP	CDC5L	NM_001253	human	genbank	57_37b	+1	reviewed	missense	c.2249	p.R750H	0.976	NULL	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors	
CNGB1	1258	genome.wustl.edu	37	16	57994814	57994814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57994814	57994814	C	T	SNP	CNGB1	NM_001297	human	genbank	57_37b	-1	reviewed	missense	c.464	p.G155E	0.001	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors	
COL29A1	256076	genome.wustl.edu	37	3	130095337	130095337	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130095337	130095337	C	A	SNP	COL29A1	NM_153264	human	genbank	57_37b	+1	validated	missense	c.325	p.Q109K	0.166	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
COL4A3	1285	genome.wustl.edu	37	2	228137792	228137792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	228137792	228137792	C	T	SNP	COL4A3	NM_000091	human	genbank	57_37b	+1	reviewed	missense	c.1886	p.T629M	0.465	HMMPfam_Collagen	HMMPfam_Collagen,PatternScan_CARBOXYPEPT_SER_SER,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors	
DCAF11	80344	genome.wustl.edu	37	14	24586235	24586235	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24586235	24586235	G	T	SNP	DCAF11	NM_025230	human	genbank	57_37b	+1	reviewed	missense	c.265	p.D89Y	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors	
DDX43	55510	genome.wustl.edu	37	6	74123768	74123768	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	74123768	74123768	A	-	DEL	DDX43	NM_018665	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1572	p.D525fs	0.796	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	(deletion:cds_exon[74123693,74123802])	no_errors	
DGKD	8527	genome.wustl.edu	37	2	234343513	234343513	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234343513	234343513	G	T	SNP	DGKD	NM_152879	human	genbank	57_37b	+1	reviewed	silent	c.552	p.L184	0.997	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors	
DISP2	85455	genome.wustl.edu	37	15	40657062	40657062	+	Silent	SNP	C	C	T	rs75422658	byCluster;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40657062	40657062	C	T	SNP	DISP2	NM_033510	human	genbank	57_37b	+1	reviewed	silent	c.627	p.D209	1.000	NULL	superfamily_SSF82866	-		
DPEP1	1800	genome.wustl.edu	37	16	89696849	89696849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89696849	89696849	G	T	SNP	DPEP1	NM_001128141	human	genbank	57_37b	+1	validated	missense	c.31	p.V11L	0.949	NULL	superfamily_SSF51556,HMMPfam_Peptidase_M19,PatternScan_RENAL_DIPEPTIDASE_1	-	no_errors	
EFHC1	114327	genome.wustl.edu	37	6	52285258	52285258	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	52285258	52285258	T	G	SNP	EFHC1	NM_018100	human	genbank	57_37b	+1	reviewed	missense	c.50	p.F17C	0.944	NULL	HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand,HMMPfam_efhand	-	no_errors	
ENSG00000245520	0	genome.wustl.edu	37	1	16956555	16956555	+	RNA	SNP	C	C	T	rs9329440	byCluster;byFrequency;by2Hit2Allele	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16956555	16956555	C	T	SNP	ENSG00000245520	ENST00000376847	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.995	-	-	-		
ENSG00000245549	0	genome.wustl.edu	37	1	16950470	16950470	+	RNA	SNP	C	C	T	rs12144467	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950470	16950470	C	T	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.996	-	-	-		
ERN1	2081	genome.wustl.edu	37	17	62130285	62130285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62130285	62130285	C	T	SNP	ERN1	NM_001433	human	genbank	57_37b	-1	reviewed	missense	c.2108	p.G703D	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111503	8111503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111503	8111503	G	A	SNP	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	missense	c.992	p.R331K	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111506	8111507	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111506	8111507	AT	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.995_996	p.N332fs	1.000:0.872	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	(deletion:cds_exon[8111436,8111561])	no_errors	
GLP2R	9340	genome.wustl.edu	37	17	9792872	9792872	+	Silent	SNP	T	T	C	rs17681708	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	9792872	9792872	T	C	SNP	GLP2R	NM_004246	human	genbank	57_37b	+1	reviewed	silent	c.1512	p.H504	0.000	NULL	PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF111418,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2	-		
GPR116	221395	genome.wustl.edu	37	6	46826804	46826804	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46826804	46826804	T	C	SNP	GPR116	NM_001098518	human	genbank	57_37b	-1	validated	missense	c.2836	p.S946G	0.000	NULL	PatternScan_EGF_2,superfamily_SEA domain,HMMPfam_SEA,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
HLX	3142	genome.wustl.edu	37	1	221053545	221053545	+	Missense_Mutation	SNP	T	T	C	rs12141189	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	221053545	221053545	T	C	SNP	HLX	NM_021958	human	genbank	57_37b	+1	validated	missense	c.346	p.S116P	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-		
IFT80	57560	genome.wustl.edu	37	3	160000320	160000320	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160000320	160000320	G	A	SNP	IFT80	NM_020800	human	genbank	57_37b	-1	validated	missense	c.1462	p.L488F	1.000	superfamily_Cyt_cd1_haem_C	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_Cyt_cd1_haem_C	-	no_errors	
IYD	389434	genome.wustl.edu	37	6	150710610	150710610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	150710610	150710610	C	T	SNP	IYD	NM_203395	human	genbank	57_37b	+1	reviewed	missense	c.301	p.R101W	1.000	superfamily_FMN-dependent nitroreductase-like,HMMPfam_Nitroreductase	superfamily_FMN-dependent nitroreductase-like,HMMPfam_Nitroreductase	-	no_errors	
KCNB2	9312	genome.wustl.edu	37	8	73480344	73480344	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73480344	73480344	C	A	SNP	KCNB2	NM_004770	human	genbank	57_37b	+1	reviewed	nonsense	c.375	p.Y125*	1.000	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Kv2channel	-	no_errors	
KCNMB2	10242	genome.wustl.edu	37	3	178560678	178560678	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178560678	178560678	C	T	SNP	KCNMB2	NM_005832	human	genbank	57_37b	+1	reviewed	nonsense	c.661	p.Q221*	1.000	HMMPfam_CaKB	HMMPfam_KcnmB2_inactiv,HMMPfam_CaKB	-	no_errors	
KRT83	3889	genome.wustl.edu	37	12	52708420	52708420	+	Missense_Mutation	SNP	G	G	A	rs2857671	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52708420	52708420	G	A	SNP	KRT83	NM_002282	human	genbank	57_37b	-1	reviewed	missense	c.1477	p.H493Y	0.283	NULL	HMMPfam_Filament,PatternScan_IF	-		
L1CAM	3897	genome.wustl.edu	37	X	153134145	153134145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153134145	153134145	G	A	SNP	L1CAM	NM_000425	human	genbank	57_37b	-1	reviewed	missense	c.1417	p.R473C	0.741	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
MRAP	56246	genome.wustl.edu	37	21	33686921	33686921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33686921	33686921	C	G	SNP	MRAP	NM_206898	human	genbank	57_37b	+1	reviewed	missense	c.266	p.S89C	0.000	NULL	NULL	-	no_errors	
NF2	4771	genome.wustl.edu	37	22	30054223	30054223	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30054223	30054223	G	C	SNP	NF2	NM_000268	human	genbank	57_37b	+1	reviewed	missense	c.645	p.E215D	1.000	HMMSmart_SM00295,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin tail domain	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228560700	228560700	+	Nonstop_Mutation	SNP	T	T	C	rs512253	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228560700	228560700	T	C	SNP	OBSCN	ENST00000441106	human	ensembl	57_37b	+1	known	nonstop	c.6070	p.*2024R	0.011	NULL	HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00409,superfamily_Immunoglobulin,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,PatternScan_PROTEIN_KINASE_TYR	-		
PMPCA	23203	genome.wustl.edu	37	9	139316601	139316601	+	Silent	SNP	C	C	T	rs10870165	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139316601	139316601	C	T	SNP	PMPCA	ENST00000399219	human	ensembl	57_37b	+1	known	silent	c.339	p.V113	0.000	NULL	NULL	-		
RANBP17	64901	genome.wustl.edu	37	5	170336737	170336737	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170336737	170336737	G	A	SNP	RANBP17	NM_022897	human	genbank	57_37b	+1	provisional	missense	c.562	p.V188I	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors	
RB1	5925	genome.wustl.edu	37	13	48936989	48936989	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48936989	48936989	C	-	DEL	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.757	p.R254fs	1.000	NULL	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	(deletion:cds_exon[48936951,48937093])	no_errors	
RBMXL3	139804	genome.wustl.edu	37	X	114424941	114424941	+	Missense_Mutation	SNP	G	G	A	rs62601530	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114424941	114424941	G	A	SNP	RBMXL3	NM_001145346	human	genbank	57_37b	+1	provisional	missense	c.937	p.A313T	0.001	NULL	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-		
SBNO2	22904	genome.wustl.edu	37	19	1124031	1124031	+	Silent	SNP	G	G	A	rs2024092	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1124031	1124031	G	A	SNP	SBNO2	ENST00000250872	human	ensembl	57_37b	-1	known	silent	c.450	p.L150	0.000	NULL	NULL	-		
SCARA5	286133	genome.wustl.edu	37	8	27779545	27779545	+	Silent	SNP	C	C	T	rs10103504	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27779545	27779545	C	T	SNP	SCARA5	NM_173833	human	genbank	57_37b	-1	provisional	silent	c.459	p.L153	0.999	NULL	HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-		
SCN1A	6323	genome.wustl.edu	37	2	166900252	166900252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166900252	166900252	G	T	SNP	SCN1A	NM_006920	human	genbank	57_37b	-1	reviewed	missense	c.1970	p.P657H	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ,PatternScan_RIBONUCLEASE_P	-	no_errors	
SETD8	387893	genome.wustl.edu	37	12	123892232	123892232	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123892232	123892232	C	A	SNP	SETD8	NM_020382	human	genbank	57_37b	+1	validated	missense	c.1041	p.H347Q	1.000	NULL	superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET	-	no_errors	
SLC9A6	10479	genome.wustl.edu	37	X	135112303	135112303	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135112303	135112303	T	C	SNP	SLC9A6	NM_001042537	human	genbank	57_37b	+1	validated	silent	c.1629	p.D543	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors	
SPEN	23013	genome.wustl.edu	37	1	16261573	16261573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16261573	16261573	G	A	SNP	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	silent	c.8838	p.Q2946	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors	
SSTR4	6754	genome.wustl.edu	37	20	23016498	23016498	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23016498	23016498	C	T	SNP	SSTR4	NM_001052	human	genbank	57_37b	+1	validated	silent	c.378	p.D126	0.981	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
SULT1E1	6783	genome.wustl.edu	37	4	70707775	70707775	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70707775	70707775	T	C	SNP	SULT1E1	NM_005420	human	genbank	57_37b	-1	reviewed	silent	c.822	p.K274	0.663	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors	
TRRAP	8295	genome.wustl.edu	37	7	98529083	98529083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	98529083	98529083	G	A	SNP	TRRAP	NM_003496	human	genbank	57_37b	+1	validated	missense	c.3647	p.R1216Q	1.000	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like	-	no_errors	
ZNF41	7592	genome.wustl.edu	37	X	47307013	47307013	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47307013	47307013	T	C	SNP	ZNF41	NM_007130	human	genbank	57_37b	-1	reviewed	missense	c.2156	p.Y719C	0.600	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF414	84330	genome.wustl.edu	37	19	8577297	8577297	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8577297	8577297	C	A	SNP	ZNF414	NM_032370	human	genbank	57_37b	-1	validated	silent	c.504	p.L168	1.000	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
ZNF423	23090	genome.wustl.edu	37	16	49671762	49671762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01	TCGA-BH-A0C7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	49671762	49671762	G	A	SNP	ZNF423	NM_015069	human	genbank	57_37b	-1	reviewed	missense	c.1301	p.A434V	0.705	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
