Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADCY5	111	genome.wustl.edu	37	3	123166519	123166519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123166519	123166519	C	T	SNP	ADCY5	NM_183357	human	genbank	57_37b	-1	validated	missense	c.874	p.A292T	1.000	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors	
ANKRD62	342850	genome.wustl.edu	37	18	12115509	12115509	+	Missense_Mutation	SNP	G	G	A	rs4519391	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12115509	12115509	G	A	SNP	ANKRD62	XM_292717	human	genbank	57_37b	+1	model	missense	c.1216	p.E406K	0.253	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
ARCN1	372	genome.wustl.edu	37	11	118471344	118471344	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118471344	118471344	C	-	DEL	ARCN1	NM_001655	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1451	p.V486fs	1.000	superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub	superfamily_SNARE-like,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub	(deletion:cds_exon[118471340,118471429])	no_errors	
ARHGEF12	23365	genome.wustl.edu	37	11	120347958	120347958	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	120347958	120347958	A	T	SNP	ARHGEF12	NM_015313	human	genbank	57_37b	+1	reviewed	silent	c.3396	p.A1132	0.290	superfamily_PH domain-like,HMMSmart_SM00233	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors	
ARID1A	8289	genome.wustl.edu	37	1	27089586	27089586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27089586	27089586	C	T	SNP	ARID1A	NM_006015	human	genbank	57_37b	+1	reviewed	missense	c.2542	p.P848S	1.000	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors	
ASTE1	28990	genome.wustl.edu	37	3	130743358	130743358	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130743358	130743358	G	T	SNP	ASTE1	NM_014065	human	genbank	57_37b	-1	validated	missense	c.793	p.H265N	0.946	NULL	HMMPfam_XPG_N,superfamily_SSF88723	-	no_errors	
ATG7	10533	genome.wustl.edu	37	3	11596291	11596291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	11596291	11596291	G	A	SNP	ATG7	NM_006395	human	genbank	57_37b	+1	validated	missense	c.2086	p.D696N	1.000	superfamily_Activating enzymes of the ubiquitin-like proteins	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF	-	no_errors	
CACNA2D3	55799	genome.wustl.edu	37	3	54603876	54603876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54603876	54603876	G	A	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	missense	c.731	p.R244Q	1.000	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CATSPERB	79820	genome.wustl.edu	37	14	92105498	92105498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92105498	92105498	C	T	SNP	CATSPERB	NM_024764	human	genbank	57_37b	-1	validated	missense	c.1529	p.R510H	0.000	NULL	NULL	-	no_errors	
CCT2	10576	genome.wustl.edu	37	12	69981336	69981336	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	69981336	69981336	G	C	SNP	CCT2	NM_006431	human	genbank	57_37b	+1	reviewed	missense	c.196	p.D66H	1.000	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_2	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,PatternScan_PROTEIN_KINASE_ATP,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-	no_errors	
CDC25B	994	genome.wustl.edu	37	20	3782704	3782704	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3782704	3782704	G	A	SNP	CDC25B	NM_021873	human	genbank	57_37b	+1	reviewed	missense	c.1055	p.R352Q	0.998	HMMPfam_M-inducer_phosp	HMMPfam_M-inducer_phosp,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese	-	no_errors	
CNKSR2	22866	genome.wustl.edu	37	X	21458841	21458841	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	21458841	21458841	C	G	SNP	CNKSR2	NM_014927	human	genbank	57_37b	+1	reviewed	nonsense	c.461	p.S154*	1.000	HMMPfam_CRIC_ras_sig	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_DUF1170,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
CNOT1	23019	genome.wustl.edu	37	16	58577381	58577381	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58577381	58577381	A	C	SNP	CNOT1	NM_206999	human	genbank	57_37b	-1	validated	missense	c.4564	p.S1522A	0.000	NULL	NULL	-	no_errors	
COX10	1352	genome.wustl.edu	37	17	14110529	14110529	+	Nonstop_Mutation	SNP	G	T	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	14110529	14110529	G	T	SNP	COX10	NM_001303	human	genbank	57_37b	+1	reviewed	nonstop	c.1331	p.*444L	0.009	NULL	HMMPfam_UbiA,PatternScan_UBIA	-	no_errors	
CUL3	8452	genome.wustl.edu	37	2	225368461	225368461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	225368461	225368461	C	T	SNP	CUL3	NM_003590	human	genbank	57_37b	-1	validated	missense	c.1285	p.E429K	1.000	HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors	
CUL4B	8450	genome.wustl.edu	37	X	119679331	119679331	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119679331	119679331	G	T	SNP	CUL4B	NM_003588	human	genbank	57_37b	-1	reviewed	nonsense	c.942	p.Y314*	0.809	superfamily_Cullin repeat,HMMPfam_Cullin	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors	
CXorf26	51260	genome.wustl.edu	37	X	75397565	75397565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	75397565	75397565	G	A	SNP	CXorf26	NM_016500	human	genbank	57_37b	+1	predicted	missense	c.524	p.G175E	0.000	NULL	HMMPfam_DUF757	-	no_errors	
DOCK4	9732	genome.wustl.edu	37	7	111387340	111387340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	111387340	111387340	C	T	SNP	DOCK4	NM_014705	human	genbank	57_37b	-1	reviewed	missense	c.4549	p.V1517I	0.993	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
DOT1L	84444	genome.wustl.edu	37	19	2202727	2202727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2202727	2202727	G	A	SNP	DOT1L	NM_032482	human	genbank	57_37b	+1	validated	missense	c.736	p.G246S	1.000	superfamily_SSF53335,HMMPfam_DOT1	superfamily_SSF53335,HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors	
DSCR6	53820	genome.wustl.edu	37	21	38390475	38390475	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	38390475	38390475	T	G	SNP	DSCR6	NM_018962	human	genbank	57_37b	+1	validated	missense	c.541	p.S181A	0.000	NULL	NULL	-	no_errors	
EDA	1896	genome.wustl.edu	37	X	68836169	68836169	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	68836169	68836169	T	G	SNP	EDA	NM_001399	human	genbank	57_37b	+1	reviewed	missense	c.17	p.V6G	0.070	NULL	HMMPfam_Collagen,superfamily_TNF-like,HMMPfam_TNF	-	no_errors	
ELF2	1998	genome.wustl.edu	37	4	139980483	139980483	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	139980483	139980483	G	C	SNP	ELF2	NM_201999	human	genbank	57_37b	-1	validated	missense	c.1400	p.T467S	0.994	NULL	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors	
EML5	161436	genome.wustl.edu	37	14	89178714	89178714	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	89178714	89178714	C	T	SNP	EML5	NM_183387	human	genbank	57_37b	-1	validated	missense	c.1558	p.D520N	1.000	superfamily_WD40 repeat-like	HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors	
EPHA7	2045	genome.wustl.edu	37	6	93969111	93969111	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	93969111	93969111	C	G	SNP	EPHA7	NM_004440	human	genbank	57_37b	-1	reviewed	missense	c.1885	p.D629H	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Growth factor receptor domain,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
ERBB4	2066	genome.wustl.edu	37	2	212652791	212652791	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	212652791	212652791	G	C	SNP	ERBB4	NM_005235	human	genbank	57_37b	-1	reviewed	missense	c.515	p.P172R	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_YLP	-	no_errors	
ERGIC1	57222	genome.wustl.edu	37	5	172359501	172359502	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	172359501	172359502	-	CT	INS	ERGIC1	NM_001031711	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.604_605	p.K202fs	1.000:1.000	HMMPfam_DUF1692	HMMPfam_DUF1692	-	no_errors	
ERGIC1	57222	genome.wustl.edu	37	5	172359502	172359502	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	172359502	172359502	A	T	SNP	ERGIC1	NM_001031711	human	genbank	57_37b	+1	reviewed	missense	c.605	p.K202M	1.000	HMMPfam_DUF1692	HMMPfam_DUF1692	-	no_errors	
FN3KRP	79672	genome.wustl.edu	37	17	80676816	80676816	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80676816	80676816	T	C	SNP	FN3KRP	NM_024619	human	genbank	57_37b	+1	validated	missense	c.176	p.L59S	0.861	superfamily_Kinase_like,HMMPfam_Fructosamin_kin	superfamily_Kinase_like,HMMPfam_Fructosamin_kin	-	no_errors	
GALNT4	8693	genome.wustl.edu	37	12	89917958	89917985	+	Frame_Shift_Del	DEL	CTCATACATTCTTTTATCCTCTATGTGT	CTCATACATTCTTTTATCCTCTATGTGT	-	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	CTCATACATTCTTTTATCCTCTATGTGT	CTCATACATTCTTTTATCCTCTATGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	89917958	89917985	CTCATACATTCTTTTATCCTCTATGTGT	-	DEL	GALNT4	NM_003774	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.369_342	p.H115fs	1.000:1.000:1.000:0.024:0.051:0.064:1.000:1.000:1.000:0.912:0.943:0.330:0.052:0.044:0.039:0.050:0.998:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.936	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	(deletion:cds_exon[89916590,89918326])	no_errors	
GAS8	2622	genome.wustl.edu	37	16	90097863	90097863	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	90097863	90097863	G	A	SNP	GAS8	NM_001481	human	genbank	57_37b	+1	reviewed	missense	c.247	p.E83K	1.000	NULL	NULL	-	no_errors	
GLUD1	2746	genome.wustl.edu	37	10	88820732	88820732	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	88820732	88820732	A	G	SNP	GLUD1	NM_005271	human	genbank	57_37b	-1	reviewed	silent	c.999	p.S333	0.996	HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	-	no_errors	
GPA33	10223	genome.wustl.edu	37	1	167024317	167024317	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167024317	167024317	G	A	SNP	GPA33	NM_005814	human	genbank	57_37b	-1	reviewed	silent	c.723	p.I241	0.167	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig	-	no_errors	
GRAMD2	196996	genome.wustl.edu	37	15	72455727	72455727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72455727	72455727	G	A	SNP	GRAMD2	NM_001012642	human	genbank	57_37b	-1	validated	missense	c.836	p.P279L	0.098	NULL	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors	
GRID2IP	392862	genome.wustl.edu	37	7	6541514	6541514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6541514	6541514	C	T	SNP	GRID2IP	NM_001145118	human	genbank	57_37b	-1	validated	silent	c.3297	p.L1099	1.000	superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors	
GRIN2B	2904	genome.wustl.edu	37	12	13722841	13722841	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	13722841	13722841	C	A	SNP	GRIN2B	NM_000834	human	genbank	57_37b	-1	reviewed	missense	c.2282	p.G761V	1.000	superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors	
HEPH	9843	genome.wustl.edu	37	X	65408292	65408292	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	65408292	65408292	G	T	SNP	HEPH	NM_138737	human	genbank	57_37b	+1	reviewed	missense	c.726	p.W242C	1.000	superfamily_Cupredoxins,HMMPfam_Cu-oxidase	superfamily_Cupredoxins,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors	
HPS3	84343	genome.wustl.edu	37	3	148871407	148871407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148871407	148871407	G	A	SNP	HPS3	NM_032383	human	genbank	57_37b	+1	reviewed	missense	c.1372	p.E458K	1.000	NULL	NULL	-	no_errors	
ICT1	3396	genome.wustl.edu	37	17	73008804	73008804	+	Missense_Mutation	SNP	G	G	T	rs3744206	byCluster;byFrequency;by1000genomes	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73008804	73008804	G	T	SNP	ICT1	NM_001545	human	genbank	57_37b	+1	reviewed	missense	c.23	p.R8L	0.399	NULL	superfamily_Peptidyl-tRNA hydrolase domain-like,HMMPfam_RF-1	-		
IPO8	10526	genome.wustl.edu	37	12	30814170	30814170	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	30814170	30814170	C	G	SNP	IPO8	NM_006390	human	genbank	57_37b	-1	reviewed	missense	c.1786	p.D596H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N	-	no_errors	
IPO8	10526	genome.wustl.edu	37	12	30815380	30815380	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	30815380	30815380	C	T	SNP	IPO8	NM_006390	human	genbank	57_37b	-1	reviewed	missense	c.1636	p.E546K	1.000	superfamily_ARM-type_fold	HMMPfam_IBN_N,superfamily_ARM-type_fold	-	no_errors	
IPO8	10526	genome.wustl.edu	37	12	30819121	30819121	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	30819121	30819121	C	G	SNP	IPO8	NM_006390	human	genbank	57_37b	-1	reviewed	missense	c.1209	p.K403N	1.000	superfamily_ARM-type_fold	HMMPfam_IBN_N,superfamily_ARM-type_fold	-	no_errors	
IRF9	10379	genome.wustl.edu	37	14	24631474	24631474	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24631474	24631474	C	A	SNP	IRF9	NM_006084	human	genbank	57_37b	+1	validated	missense	c.121	p.P41T	1.000	HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF	HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3	-	no_errors	
KCND2	3751	genome.wustl.edu	37	7	119915571	119915571	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	119915571	119915571	C	T	SNP	KCND2	NM_012281	human	genbank	57_37b	+1	reviewed	silent	c.885	p.F295	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
KIAA0232	9778	genome.wustl.edu	37	4	6865866	6865866	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6865866	6865866	C	G	SNP	KIAA0232	NM_001100590	human	genbank	57_37b	+1	validated	missense	c.3757	p.P1253A	0.998	NULL	NULL	-	no_errors	
KIF5B	3799	genome.wustl.edu	37	10	32326302	32326302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	32326302	32326302	C	T	SNP	KIF5B	NM_004521	human	genbank	57_37b	-1	validated	missense	c.591	p.M197I	1.000	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KLC2	64837	genome.wustl.edu	37	11	66032708	66032708	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66032708	66032708	T	G	SNP	KLC2	NM_001134775	human	genbank	57_37b	+1	validated	splice_site	c.1334+2	e10+2	1.000	-	-	-	no_errors	
LHCGR	3973	genome.wustl.edu	37	2	48982717	48982717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48982717	48982717	C	T	SNP	LHCGR	NM_000233	human	genbank	57_37b	-1	reviewed	missense	c.94	p.E32K	0.955	superfamily_L domain-like	superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
LOC100288406	0	genome.wustl.edu	37	12	92627	92627	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	92627	92627	C	T	SNP	LOC100288406	XM_002343141	human	genbank	57_37b	+1	model	silent	c.651	p.A217	0.002	NULL	NULL	-	no_errors	
LOC100289010	0	genome.wustl.edu	37	11	126147521	126147521	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	126147521	126147521	G	T	SNP	LOC100289010	XM_002343135	human	genbank	57_37b	-1	model	missense	c.136	p.Q46K	0.995	NULL	NULL	-	no_errors	
LOC341378	341378	genome.wustl.edu	37	12	106565213	106565213	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	106565213	106565213	G	C	SNP	LOC341378	XM_001715424	human	genbank	57_37b	+1	model	missense	c.57	p.L19F	0.980	NULL	NULL	-	no_errors	
LOC646791	646791	genome.wustl.edu	37	15	75614127	75614127	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75614127	75614127	C	T	SNP	LOC646791	XR_017650	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.935	-	-	-	no_errors	
LRTOMT	220074	genome.wustl.edu	37	11	71804648	71804648	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71804648	71804648	T	A	SNP	LRTOMT	NM_145309	human	genbank	57_37b	+1	validated	missense	c.189	p.D63E	0.984	superfamily_L domain-like	superfamily_L domain-like,HMMPfam_LRR_1	-	no_errors	
MAP3K10	4294	genome.wustl.edu	37	19	40711051	40711051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40711051	40711051	G	A	SNP	MAP3K10	NM_002446	human	genbank	57_37b	+1	reviewed	missense	c.1036	p.G346R	0.950	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MARK3	4140	genome.wustl.edu	37	14	103969315	103969315	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	103969315	103969315	T	G	SNP	MARK3	NM_001128918	human	genbank	57_37b	+1	validated	missense	c.2013	p.D671E	0.021	superfamily_Kinase associated domain 1 KA1	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Kinase associated domain 1 KA1,HMMPfam_KA1	-	no_errors	
MIR491	0	genome.wustl.edu	37	9	20716150	20716150	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	20716150	20716150	C	T	SNP	MIR491	ENST00000384877	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
MRFAP1	93621	genome.wustl.edu	37	4	6642662	6642662	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6642662	6642662	G	A	SNP	MRFAP1	NM_033296	human	genbank	57_37b	+1	provisional	missense	c.73	p.E25K	0.997	NULL	NULL	-	no_errors	
MTOR	2475	genome.wustl.edu	37	1	11204742	11204742	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11204742	11204742	C	G	SNP	MTOR	NM_004958	human	genbank	57_37b	-1	reviewed	missense	c.4835	p.R1612P	0.995	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
NLRP2	55655	genome.wustl.edu	37	19	55501561	55501561	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55501561	55501561	G	A	SNP	NLRP2	NM_017852	human	genbank	57_37b	+1	provisional	splice_site	c.2537+1	e8+1	0.862	-	-	-	no_errors	
NOL4	8715	genome.wustl.edu	37	18	31599298	31599298	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	31599298	31599298	C	G	SNP	NOL4	NM_003787	human	genbank	57_37b	-1	validated	missense	c.1040	p.R347T	1.000	NULL	NULL	-	no_errors	
NPHP4	261734	genome.wustl.edu	37	1	5969237	5969237	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	5969237	5969237	G	A	SNP	NPHP4	NM_015102	human	genbank	57_37b	-1	reviewed	missense	c.1478	p.P493L	0.001	NULL	NULL	-	no_errors	
OR13F1	138805	genome.wustl.edu	37	9	107267045	107267045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107267045	107267045	C	T	SNP	OR13F1	NM_001004485	human	genbank	57_37b	+1	provisional	missense	c.502	p.L168F	0.703	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PARG	8505	genome.wustl.edu	37	10	51087829	51087829	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	51087829	51087829	C	T	SNP	PARG	NM_003631	human	genbank	57_37b	-1	reviewed	silent	c.1878	p.S626	0.972	HMMPfam_PARG_cat	HMMPfam_PARG_cat	-	no_errors	
PCDHGA1	56114	genome.wustl.edu	37	5	140712210	140712210	+	Silent	SNP	G	G	A	rs112347072	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140712210	140712210	G	A	SNP	PCDHGA1	NM_018912	human	genbank	57_37b	+1	reviewed	silent	c.1959	p.P653	0.993	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PCYT1B	9468	genome.wustl.edu	37	X	24580504	24580504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24580504	24580504	G	A	SNP	PCYT1B	NM_004845	human	genbank	57_37b	-1	reviewed	missense	c.1016	p.S339L	0.995	NULL	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	-	no_errors	
PHLPP1	23239	genome.wustl.edu	37	18	60642691	60642691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60642691	60642691	G	A	SNP	PHLPP1	NM_194449	human	genbank	57_37b	+1	validated	missense	c.2281	p.D761N	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain	HMMPfam_PH,superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178942489	178942489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178942489	178942489	C	T	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.2296	p.L766F	1.000	superfamily_Kinase_like	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3R1	5295	genome.wustl.edu	37	5	67591104	67591115	+	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	TTAAACCAGACC	TTAAACCAGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67591104	67591115	TTAAACCAGACC	-	DEL	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1697_1708	p.KPDL567in_frame_del	1.000:0.993:1.000:1.000:0.892:1.000:1.000:0.152:1.000:1.000:1.000:1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	(deletion:cds_exon[67590976,67591152])	no_errors	
PPP2R2B	5521	genome.wustl.edu	37	5	145969747	145969747	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145969747	145969747	G	A	SNP	PPP2R2B	NM_181676	human	genbank	57_37b	-1	reviewed	silent	c.1104	p.F368	0.995	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2,PatternScan_WD_REPEATS_1	-	no_errors	
PTGFRN	5738	genome.wustl.edu	37	1	117527304	117527304	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117527304	117527304	G	C	SNP	PTGFRN	NM_020440	human	genbank	57_37b	+1	provisional	missense	c.2170	p.D724H	0.892	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_ig	-	no_errors	
RASAL3	64926	genome.wustl.edu	37	19	15565183	15565183	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15565183	15565183	C	T	SNP	RASAL3	NM_022904	human	genbank	57_37b	-1	validated	missense	c.2149	p.E717K	0.997	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	superfamily_PH domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors	
RBM15	64783	genome.wustl.edu	37	1	110884723	110884723	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	110884723	110884723	A	G	SNP	RBM15	NM_022768	human	genbank	57_37b	+1	validated	missense	c.2696	p.Q899R	1.000	superfamily_SPOC domain-like,HMMPfam_SPOC	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,superfamily_SPOC domain-like,HMMPfam_SPOC	-	no_errors	
RGS9	8787	genome.wustl.edu	37	17	63221447	63221447	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	63221447	63221447	G	A	SNP	RGS9	NM_003835	human	genbank	57_37b	+1	reviewed	missense	c.1735	p.A579T	0.857	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors	
RPS6KA6	27330	genome.wustl.edu	37	X	83361977	83361977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	83361977	83361977	T	C	SNP	RPS6KA6	NM_014496	human	genbank	57_37b	-1	reviewed	missense	c.1183	p.I395V	0.137	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_SERPIN,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
SBNO1	55206	genome.wustl.edu	37	12	123789180	123789180	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123789180	123789180	C	A	SNP	SBNO1	NM_018183	human	genbank	57_37b	-1	validated	silent	c.3714	p.G1238	1.000	NULL	NULL	-	no_errors	
SEMA3C	10512	genome.wustl.edu	37	7	80434993	80434993	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	80434993	80434993	G	A	SNP	SEMA3C	NM_006379	human	genbank	57_37b	-1	validated	missense	c.620	p.A207V	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG	-	no_errors	
SEMA6A	57556	genome.wustl.edu	37	5	115782654	115782654	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	115782654	115782654	A	G	SNP	SEMA6A	NM_020796	human	genbank	57_37b	-1	validated	silent	c.2748	p.Y916	1.000	NULL	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,HMMPfam_PSI,superfamily_Plexin repeat,HMMSmart_SM00423	-	no_errors	
SLC38A4	55089	genome.wustl.edu	37	12	47173627	47173627	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	47173627	47173627	G	T	SNP	SLC38A4	NM_001143824	human	genbank	57_37b	-1	validated	silent	c.594	p.G198	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30	-	no_errors	
SMC3	9126	genome.wustl.edu	37	10	112340713	112340713	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	112340713	112340713	G	A	SNP	SMC3	NM_005445	human	genbank	57_37b	+1	reviewed	missense	c.481	p.E161K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_BAG domain,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
SNX7	51375	genome.wustl.edu	37	1	99164273	99164273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	99164273	99164273	G	A	SNP	SNX7	NM_015976	human	genbank	57_37b	+1	reviewed	missense	c.850	p.E284K	1.000	NULL	superfamily_PX,HMMSmart_PX,HMMPfam_PX	-	no_errors	
TLL2	7093	genome.wustl.edu	37	10	98165021	98165021	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98165021	98165021	C	T	SNP	TLL2	NM_012465	human	genbank	57_37b	-1	reviewed	missense	c.1235	p.R412Q	1.000	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	PatternScan_EGF_1,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF	-	no_errors	
TTC21B	79809	genome.wustl.edu	37	2	166771856	166771856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166771856	166771856	G	T	SNP	TTC21B	NM_024753	human	genbank	57_37b	-1	validated	missense	c.1993	p.L665I	1.000	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors	
TWF2	11344	genome.wustl.edu	37	3	52265976	52265976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52265976	52265976	G	A	SNP	TWF2	NM_007284	human	genbank	57_37b	-1	reviewed	missense	c.266	p.S89L	1.000	superfamily_SSF55753,HMMPfam_Cofilin_ADF,HMMSmart_ADF	superfamily_SSF55753,HMMPfam_Cofilin_ADF,HMMSmart_ADF	-	no_errors	
UPB1	51733	genome.wustl.edu	37	22	24898389	24898389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24898389	24898389	G	A	SNP	UPB1	ENST00000382760	human	ensembl	57_37b	+1	known	missense	c.449	p.R150H	0.000	NULL	HMMPfam_CN_hydrolase	-	no_errors	
VCAN	1462	genome.wustl.edu	37	5	82837218	82837218	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	82837218	82837218	T	C	SNP	VCAN	NM_004385	human	genbank	57_37b	+1	reviewed	missense	c.8396	p.M2799T	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
WDR67	93594	genome.wustl.edu	37	8	124141389	124141389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124141389	124141389	G	A	SNP	WDR67	NM_145647	human	genbank	57_37b	+1	validated	missense	c.2201	p.R734H	0.922	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	
WIT1	51352	genome.wustl.edu	37	11	32460430	32460430	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32460430	32460430	G	A	SNP	WIT1	ENST00000395900	human	ensembl	57_37b	+1	known	missense	c.3	p.M1I	0.000	NULL	NULL	-	no_errors	
ZCCHC12	170261	genome.wustl.edu	37	X	117959442	117959442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117959442	117959442	G	A	SNP	ZCCHC12	NM_173798	human	genbank	57_37b	+1	provisional	missense	c.235	p.E79K	0.996	NULL	NULL	-	no_errors	
ZNF3	7551	genome.wustl.edu	37	7	99662422	99662422	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EE-01	TCGA-BH-A0EE-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99662422	99662422	C	T	SNP	ZNF3	NM_017715	human	genbank	57_37b	-1	validated	missense	c.385	p.D129N	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	-	no_errors	
