Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABHD8	79575	genome.wustl.edu	37	19	17412218	17412218	+	Missense_Mutation	SNP	C	C	T	rs3745186	byCluster;byFrequency;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17412218	17412218	C	T	SNP	ABHD8	NM_024527	human	genbank	57_37b	-1	validated	missense	c.208	p.G70R	0.938	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	-		
ATRN	8455	genome.wustl.edu	37	20	3559378	3559378	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3559378	3559378	G	C	SNP	ATRN	NM_139321	human	genbank	57_37b	+1	reviewed	missense	c.2503	p.V835L	1.000	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMPfam_PSI,HMMSmart_SM00423,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1	-	no_errors	
C7orf27	221927	genome.wustl.edu	37	7	2580914	2580914	+	Missense_Mutation	SNP	C	C	T	rs62442586	byCluster;byFrequency;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2580914	2580914	C	T	SNP	C7orf27	ENST00000396970	human	ensembl	57_37b	-1	known	missense	c.637	p.G213S	0.000	NULL	NULL	-		
C9orf102	56959	genome.wustl.edu	37	9	98638306	98638306	+	Missense_Mutation	SNP	C	C	T	rs56108623	byCluster;byFrequency;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98638306	98638306	C	T	SNP	C9orf102	NM_001010895	human	genbank	57_37b	+1	validated	missense	c.19	p.P7S	0.024	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-		
C9orf61	9413	genome.wustl.edu	37	9	72002911	72002912	+	In_Frame_Ins	INS	-	-	GTTATA	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	72002911	72002912	-	GTTATA	INS	C9orf61	ENST00000377216	human	ensembl	57_37b	+1	known	in_frame_ins	c.55_56	p.20in_frame_insYS	0.000:0.000	NULL	NULL	-	no_errors	
CAMKK2	10645	genome.wustl.edu	37	12	121712077	121712077	+	Missense_Mutation	SNP	T	T	A	rs3817190	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121712077	121712077	T	A	SNP	CAMKK2	NM_006549	human	genbank	57_37b	-1	reviewed	missense	c.253	p.T85S	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-		
DBX1	120237	genome.wustl.edu	37	11	20178717	20178717	+	Silent	SNP	G	G	T	rs831464	byCluster;byFrequency;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20178717	20178717	G	T	SNP	DBX1	NM_001029865	human	genbank	57_37b	-1	provisional	silent	c.538	p.R180	0.996	superfamily_Homeodomain-like	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-		
DSPP	1834	genome.wustl.edu	37	4	88533705	88533706	+	Frame_Shift_Ins	INS	-	-	GGAAAGAA	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88533705	88533706	-	GGAAAGAA	INS	DSPP	NM_014208	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.367_368	p.I124fs	0.964:0.102	NULL	NULL	-	no_errors	
ENSG00000245549	0	genome.wustl.edu	37	1	16950880	16950880	+	RNA	SNP	T	T	C	rs1629127	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950880	16950880	T	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.238	-	-	-		
ENSG00000246387	0	genome.wustl.edu	37	7	50680552	50680552	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	50680552	50680552	G	T	SNP	ENSG00000246387	ENST00000502127	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
FLII	2314	genome.wustl.edu	37	17	18157896	18157896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18157896	18157896	G	A	SNP	FLII	NM_002018	human	genbank	57_37b	-1	reviewed	missense	c.514	p.R172C	1.000	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52047,HMMPfam_LRR_1,superfamily_SSF52058,HMMSmart_LRR_TYP,superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	-	no_errors	
GPR149	344758	genome.wustl.edu	37	3	154055726	154055726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	154055726	154055726	C	T	SNP	GPR149	NM_001038705	human	genbank	57_37b	-1	provisional	missense	c.1958	p.R653H	1.000	NULL	NULL	-	no_errors	
KLHL4	56062	genome.wustl.edu	37	X	86887332	86887332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	86887332	86887332	G	A	SNP	KLHL4	NM_057162	human	genbank	57_37b	+1	reviewed	missense	c.1447	p.G483R	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LINGO2	158038	genome.wustl.edu	37	9	27950338	27950338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	27950338	27950338	C	T	SNP	LINGO2	NM_152570	human	genbank	57_37b	-1	provisional	missense	c.332	p.R111H	1.000	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
MAGEE2	139599	genome.wustl.edu	37	X	75004148	75004148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	75004148	75004148	G	A	SNP	MAGEE2	NM_138703	human	genbank	57_37b	-1	validated	missense	c.739	p.L247F	0.018	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	12011150	12011150	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12011150	12011150	A	G	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	missense	c.557	p.D186G	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PHLDA2	7262	genome.wustl.edu	37	11	2950558	2950558	+	Silent	SNP	A	A	G	rs13390	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	2950558	2950558	A	G	SNP	PHLDA2	NM_003311	human	genbank	57_37b	-1	reviewed	silent	c.37	p.L13	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-		
PLCG1	5335	genome.wustl.edu	37	20	39802876	39802876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39802876	39802876	G	A	SNP	PLCG1	NM_002660	human	genbank	57_37b	+1	reviewed	missense	c.3758	p.R1253H	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
SCFD1	23256	genome.wustl.edu	37	14	31118737	31118737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31118737	31118737	C	T	SNP	SCFD1	NM_016106	human	genbank	57_37b	+1	validated	missense	c.617	p.A206V	1.000	superfamily_Sec1-like,HMMPfam_Sec1	superfamily_Sec1-like,HMMPfam_Sec1	-	no_errors	
SERPINA9	327657	genome.wustl.edu	37	14	94933670	94933670	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94933670	94933670	T	A	SNP	SERPINA9	NM_175739	human	genbank	57_37b	-1	validated	silent	c.732	p.P244	0.014	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors	
SF3B2	10992	genome.wustl.edu	37	11	65819873	65819873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65819873	65819873	C	T	SNP	SF3B2	NM_006842	human	genbank	57_37b	+1	reviewed	silent	c.18	p.P6	0.294	NULL	HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_DUF382,HMMSmart_SM00581,HMMPfam_PSP	-	no_errors	
SIGLEC15	284266	genome.wustl.edu	37	18	43422104	43422104	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43422104	43422104	G	T	SNP	SIGLEC15	NM_213602	human	genbank	57_37b	+1	validated	missense	c.939	p.L313F	0.960	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set	-	no_errors	
SLC9A3R2	9351	genome.wustl.edu	37	16	2086421	2086421	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2086421	2086421	C	T	SNP	SLC9A3R2	NM_001130012	human	genbank	57_37b	+1	validated	missense	c.511	p.R171W	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_EBP50_C-term	-	no_errors	
SNAPC1	6617	genome.wustl.edu	37	14	62229257	62229257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	62229257	62229257	G	A	SNP	SNAPC1	NM_003082	human	genbank	57_37b	+1	validated	missense	c.79	p.E27K	1.000	HMMPfam_SNAPc_SNAP43	HMMPfam_SNAPc_SNAP43	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149511985	149511985	+	Missense_Mutation	SNP	A	A	G	rs10952230	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149511985	149511985	A	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.10535	p.N3512S	0.190	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-		
ZNF143	7702	genome.wustl.edu	37	11	9494303	9494303	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	9494303	9494303	A	G	SNP	ZNF143	NM_003442	human	genbank	57_37b	+1	validated	silent	c.192	p.Q64	0.759	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF496	84838	genome.wustl.edu	37	1	247473058	247473058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01	TCGA-BH-A0EI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247473058	247473058	G	A	SNP	ZNF496	NM_032752	human	genbank	57_37b	-1	provisional	missense	c.835	p.R279C	0.001	HMMSmart_KRAB	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
