Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCG1	9619	genome.wustl.edu	37	21	43693544	43693544	+	Missense_Mutation	SNP	T	T	A	rs75083034	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43693544	43693544	T	A	SNP	ABCG1	NM_004915	human	genbank	57_37b	+1	reviewed	missense	c.536	p.M179K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane	-		
ATXN10	25814	genome.wustl.edu	37	22	46088888	46088888	+	Silent	SNP	G	G	A	rs61733598	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46088888	46088888	G	A	SNP	ATXN10	NM_013236	human	genbank	57_37b	+1	reviewed	silent	c.321	p.T107	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Atx10homo_assoc	-		
C1orf183	55924	genome.wustl.edu	37	1	112270004	112270004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112270004	112270004	G	A	SNP	C1orf183	NM_019099	human	genbank	57_37b	-1	validated	silent	c.480	p.N160	0.999	NULL	NULL	-	no_errors	
C20orf132	140699	genome.wustl.edu	37	20	35772133	35772133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35772133	35772133	A	G	SNP	C20orf132	ENST00000400441	human	ensembl	57_37b	-1	known	missense	c.1322	p.F441S	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
CACNA1D	776	genome.wustl.edu	37	3	53844194	53844194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53844194	53844194	C	T	SNP	CACNA1D	NM_000720	human	genbank	57_37b	+1	validated	missense	c.6121	p.R2041C	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CHGB	1114	genome.wustl.edu	37	20	5903619	5903619	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	5903619	5903619	C	T	SNP	CHGB	NM_001819	human	genbank	57_37b	+1	reviewed	nonsense	c.829	p.R277*	0.979	HMMPfam_Granin	HMMPfam_Granin,PatternScan_GRANINS_2,PatternScan_GRANINS_1	-	no_errors	
CNTN5	53942	genome.wustl.edu	37	11	99690286	99690286	+	Missense_Mutation	SNP	T	T	G	rs10790978	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	99690286	99690286	T	G	SNP	CNTN5	NM_014361	human	genbank	57_37b	+1	reviewed	missense	c.67	p.S23A	0.999	NULL	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-		
CNTNAP5	129684	genome.wustl.edu	37	2	125504906	125504906	+	Silent	SNP	C	C	T	rs35749633	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	125504906	125504906	C	T	SNP	CNTNAP5	NM_130773	human	genbank	57_37b	+1	reviewed	silent	c.2175	p.D725	0.080	superfamily_ConA_like_lec_gl	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-		
DCAF8L2	347442	genome.wustl.edu	37	X	27765399	27765399	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	27765399	27765399	A	G	SNP	DCAF8L2	NM_001136533	human	genbank	57_37b	+1	provisional	silent	c.387	p.E129	0.009	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
DNAH8	1769	genome.wustl.edu	37	6	38851106	38851106	+	Silent	SNP	G	G	A	rs117459357	by1000genomes	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	38851106	38851106	G	A	SNP	DNAH8	NM_001371	human	genbank	57_37b	+1	validated	silent	c.7359	p.L2453	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-		
EWSR1	2130	genome.wustl.edu	37	22	29668221	29668221	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29668221	29668221	C	-	DEL	EWSR1	NM_005243	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.30	p.Q11fs	1.000	NULL	HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	(deletion:cds_exon[29668205,29668241])	no_errors	
GAP43	2596	genome.wustl.edu	37	3	115395170	115395170	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	115395170	115395170	G	T	SNP	GAP43	NM_001130064	human	genbank	57_37b	+1	reviewed	missense	c.449	p.G150V	0.106	HMMPfam_Neuromodulin	HMMPfam_Neuromodulin_N,HMMSmart_IQ,HMMPfam_IQ,PatternScan_NEUROMODULIN_2,HMMPfam_Neuromodulin	-	no_errors	
GBP6	163351	genome.wustl.edu	37	1	89843685	89843685	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	89843685	89843685	G	T	SNP	GBP6	NM_198460	human	genbank	57_37b	+1	validated	missense	c.342	p.W114C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	-	no_errors	
GULP1	51454	genome.wustl.edu	37	2	189405977	189405977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189405977	189405977	T	C	SNP	GULP1	NM_016315	human	genbank	57_37b	+1	validated	missense	c.331	p.F111L	1.000	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors	
IL17RC	84818	genome.wustl.edu	37	3	9974809	9974809	+	Silent	SNP	G	G	A	rs76999397	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9974809	9974809	G	A	SNP	IL17RC	NM_153461	human	genbank	57_37b	+1	reviewed	silent	c.1908	p.A636	0.397	HMMPfam_SEFIR	HMMPfam_SEFIR	-		
INO80B	83444	genome.wustl.edu	37	2	74684835	74684835	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74684835	74684835	G	C	SNP	INO80B	NM_031288	human	genbank	57_37b	+1	validated	silent	c.915	p.P305	0.002	HMMPfam_zf-HIT	HMMPfam_PAPA-1,HMMPfam_zf-HIT	-	no_errors	
LMBR1L	55716	genome.wustl.edu	37	12	49496159	49496159	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49496159	49496159	T	A	SNP	LMBR1L	NM_018113	human	genbank	57_37b	-1	validated	missense	c.770	p.N257I	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors	
LOC100287927	0	genome.wustl.edu	37	22	23248508	23248508	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	23248508	23248508	G	A	SNP	LOC100287927	XM_002343770	human	genbank	57_37b	-1	model	silent	c.276	p.C92	0.000	NULL	PatternScan_TUBULIN_B_AUTOREG	-	no_errors	
LRRC41	10489	genome.wustl.edu	37	1	46768864	46768864	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46768864	46768864	G	C	SNP	LRRC41	NM_006369	human	genbank	57_37b	-1	validated	missense	c.131	p.P44R	1.000	NULL	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56184070	56184088	+	Frame_Shift_Del	DEL	GTATGGAAGGAGCTGTGAT	GTATGGAAGGAGCTGTGAT	-	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	GTATGGAAGGAGCTGTGAT	GTATGGAAGGAGCTGTGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56184070	56184088	GTATGGAAGGAGCTGTGAT	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.4275_4293	p.R1428fs	1.000:1.000:1.000:1.000:1.000:0.998:0.323:0.946:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56184053,56184184])	no_errors	
NAT15	79903	genome.wustl.edu	37	16	3534810	3534810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3534810	3534810	G	A	SNP	NAT15	ENST00000421765	human	ensembl	57_37b	+1	known	missense	c.457	p.G153R	0.005	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors	
NKAIN4	128414	genome.wustl.edu	37	20	61880169	61880169	+	Missense_Mutation	SNP	T	T	G	rs1129659	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61880169	61880169	T	G	SNP	NKAIN4	NM_152864	human	genbank	57_37b	-1	validated	missense	c.271	p.K91Q	0.998	HMMPfam_NKAIN	HMMPfam_NKAIN	-		
RUNX1T1	862	genome.wustl.edu	37	8	92972572	92972572	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	92972572	92972572	C	T	SNP	RUNX1T1	NM_175634	human	genbank	57_37b	-1	reviewed	silent	c.1713	p.T571	0.850	NULL	HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors	
SACS	26278	genome.wustl.edu	37	13	23930148	23930148	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	23930148	23930148	T	G	SNP	SACS	NM_014363	human	genbank	57_37b	-1	reviewed	splice_site	c.605-2	e7-2	1.000	-	-	-	no_errors	
SCUBE1	80274	genome.wustl.edu	37	22	43603586	43603586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43603586	43603586	C	T	SNP	SCUBE1	NM_173050	human	genbank	57_37b	-1	validated	missense	c.2768	p.R923H	0.980	NULL	PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	-	no_errors	
SEZ6	124925	genome.wustl.edu	37	17	27308950	27308950	+	Missense_Mutation	SNP	C	C	T	rs61737975	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27308950	27308950	C	T	SNP	SEZ6	NM_178860	human	genbank	57_37b	-1	validated	missense	c.163	p.V55I	0.028	NULL	superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042	-		
SMCHD1	23347	genome.wustl.edu	37	18	2700752	2700752	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2700752	2700752	C	T	SNP	SMCHD1	NM_015295	human	genbank	57_37b	+1	validated	missense	c.1483	p.P495S	1.000	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors	
TSPYL2	64061	genome.wustl.edu	37	X	53112279	53112279	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53112279	53112279	T	G	SNP	TSPYL2	NM_022117	human	genbank	57_37b	+1	reviewed	missense	c.599	p.V200G	0.968	NULL	HMMPfam_NAP	-	no_errors	
UGT2A2	0	genome.wustl.edu	37	4	70504971	70504971	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70504971	70504971	T	A	SNP	UGT2A2	NM_001105677	human	genbank	57_37b	-1	inferred	missense	c.364	p.I122F	0.001	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
WDR34	89891	genome.wustl.edu	37	9	131398636	131398636	+	Silent	SNP	C	C	T	rs10760570	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131398636	131398636	C	T	SNP	WDR34	NM_052844	human	genbank	57_37b	-1	validated	silent	c.627	p.Q209	0.996	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-		
ZNF45	7596	genome.wustl.edu	37	19	44419341	44419341	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H6-01	TCGA-BH-A0H6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44419341	44419341	G	A	SNP	ZNF45	NM_003425	human	genbank	57_37b	-1	validated	silent	c.247	p.L83	0.021	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
