Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABI1	10006	genome.wustl.edu	37	10	27040638	27040638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27040638	27040638	G	A	SNP	ABI1	NM_005470	human	genbank	57_37b	-1	reviewed	missense	c.1240	p.P414S	0.999	superfamily_SH3-domain	HMMPfam_Abi_HHR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
ACSL1	2180	genome.wustl.edu	37	4	185678828	185678828	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	185678828	185678828	C	T	SNP	ACSL1	NM_001995	human	genbank	57_37b	-1	reviewed	silent	c.1917	p.V639	1.000	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
ALDH1A1	216	genome.wustl.edu	37	9	75533714	75533714	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	75533714	75533714	C	A	SNP	ALDH1A1	NM_000689	human	genbank	57_37b	-1	reviewed	missense	c.772	p.A258S	1.000	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ARFGEF2	10564	genome.wustl.edu	37	20	47601333	47601333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47601333	47601333	G	A	SNP	ARFGEF2	NM_006420	human	genbank	57_37b	+1	reviewed	missense	c.2026	p.E676K	1.000	superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981	-	no_errors	
ATP7A	538	genome.wustl.edu	37	X	77244986	77244986	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77244986	77244986	T	C	SNP	ATP7A	NM_000052	human	genbank	57_37b	+1	reviewed	missense	c.868	p.S290P	1.000	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
BMPR2	659	genome.wustl.edu	37	2	203417447	203417447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203417447	203417447	G	A	SNP	BMPR2	NM_001204	human	genbank	57_37b	+1	reviewed	silent	c.1422	p.R474	0.992	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_SSF57302,HMMPfam_Activin_recp,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
BTN3A1	11119	genome.wustl.edu	37	6	26406257	26406257	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26406257	26406257	G	C	SNP	BTN3A1	NM_007048	human	genbank	57_37b	+1	validated	missense	c.206	p.S69T	0.001	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
CA11	770	genome.wustl.edu	37	19	49147687	49147691	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	CTCTC	CTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49147687	49147691	CTCTC	-	DEL	CA11	NM_001217	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.282_278	p.G93fs	1.000:1.000:1.000:1.000:1.000	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	PatternScan_ALPHA_CA_1,superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	(deletion:cds_exon[49147684,49147826])	no_errors	
CA11	770	genome.wustl.edu	37	19	49147687	49147691	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	CTCTC	CTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49147687	49147691	CTCTC	-	DEL	CA11	NM_001217	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.282_278	p.G93fs	1.000:1.000:1.000:1.000:1.000	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	PatternScan_ALPHA_CA_1,superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	(deletion:cds_exon[49147684,49147826])	no_errors	
CLCA2	9635	genome.wustl.edu	37	1	86919248	86919248	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86919248	86919248	T	G	SNP	CLCA2	NM_006536	human	genbank	57_37b	+1	reviewed	silent	c.2352	p.S784	0.961	NULL	HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973	-	no_errors	
COBLL1	22837	genome.wustl.edu	37	2	165551456	165551456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	165551456	165551456	C	T	SNP	COBLL1	NM_014900	human	genbank	57_37b	-1	validated	missense	c.2560	p.D854N	0.000	NULL	HMMPfam_Cobl	-	no_errors	
COL11A2	1302	genome.wustl.edu	37	6	33135615	33135615	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33135615	33135615	C	-	DEL	COL11A2	NM_080680	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3975	p.P1326fs	0.991	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	(deletion:cds_exon[33135576,33135629])	no_errors	
COL11A2	1302	genome.wustl.edu	37	6	33135615	33135615	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33135615	33135615	C	-	DEL	COL11A2	NM_080680	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3975	p.P1326fs	0.991	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	(deletion:cds_exon[33135576,33135629])	no_errors	
CTRL	1506	genome.wustl.edu	37	16	67964902	67964902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67964902	67964902	C	T	SNP	CTRL	NM_001907	human	genbank	57_37b	-1	provisional	missense	c.157	p.D53N	0.590	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
DGKA	1606	genome.wustl.edu	37	12	56347471	56347471	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56347471	56347471	C	G	SNP	DGKA	NM_001345	human	genbank	57_37b	+1	reviewed	missense	c.2127	p.I709M	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors	
DMD	1756	genome.wustl.edu	37	X	31950337	31950337	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	31950337	31950337	C	G	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.6622	p.E2208Q	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors	
DNAJB3	414061	genome.wustl.edu	37	2	234652466	234652466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234652466	234652466	C	T	SNP	DNAJB3	NM_001001394	human	genbank	57_37b	-1	validated	missense	c.97	p.D33N	0.997	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors	
ELK1	2002	genome.wustl.edu	37	X	47500696	47500696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47500696	47500696	G	A	SNP	ELK1	NM_001114123	human	genbank	57_37b	-1	reviewed	missense	c.145	p.R49C	1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors	
FABP9	646480	genome.wustl.edu	37	8	82371416	82371416	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	82371416	82371416	T	C	SNP	FABP9	NM_001080526	human	genbank	57_37b	-1	provisional	missense	c.230	p.D77G	1.000	superfamily_Calycin,HMMPfam_Lipocalin	superfamily_Calycin,HMMPfam_Lipocalin,PatternScan_FABP	-	no_errors	
FKBP1AP1	0	genome.wustl.edu	37	19	58338261	58338267	+	RNA	DEL	TTATTTA	TTATTTA	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	TTATTTA	TTATTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58338261	58338267	TTATTTA	-	DEL	FKBP1AP1	ENST00000500979	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000:0.001:0.000:0.007:0.011:0.018:0.037	-	-	(deletion:rna[58336669,58338285])	no_errors	
HIVEP2	3097	genome.wustl.edu	37	6	143093972	143093972	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	143093972	143093972	C	A	SNP	HIVEP2	NM_006734	human	genbank	57_37b	-1	provisional	missense	c.1904	p.G635V	0.030	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
IL18RAP	8807	genome.wustl.edu	37	2	103039784	103039784	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103039784	103039784	G	A	SNP	IL18RAP	NM_003853	human	genbank	57_37b	+1	reviewed	missense	c.47	p.R16Q	0.001	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors	
KIAA2022	340533	genome.wustl.edu	37	X	73961666	73961666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73961666	73961666	G	A	SNP	KIAA2022	NM_001008537	human	genbank	57_37b	-1	validated	missense	c.2726	p.A909V	0.344	NULL	NULL	-	no_errors	
KL	9365	genome.wustl.edu	37	13	33634928	33634928	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33634928	33634928	A	G	SNP	KL	NM_004795	human	genbank	57_37b	+1	reviewed	missense	c.1712	p.Y571C	0.937	superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors	
LMF1	64788	genome.wustl.edu	37	16	1004605	1004605	+	Silent	SNP	A	A	G	rs12448005	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1004605	1004605	A	G	SNP	LMF1	NM_022773	human	genbank	57_37b	-1	validated	silent	c.255	p.L85	1.000	NULL	HMMPfam_DUF1222	-		
LMOD3	56203	genome.wustl.edu	37	3	69168311	69168311	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	69168311	69168311	G	A	SNP	LMOD3	NM_198271	human	genbank	57_37b	-1	validated	nonsense	c.1195	p.Q399*	1.000	HMMPfam_Tropomodulin,superfamily_RNI-like	HMMPfam_Tropomodulin,superfamily_RNI-like,HMMPfam_WH2	-	no_errors	
LMOD3	56203	genome.wustl.edu	37	3	69168311	69168311	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	69168311	69168311	G	A	SNP	LMOD3	NM_198271	human	genbank	57_37b	-1	validated	nonsense	c.1195	p.Q399*	1.000	HMMPfam_Tropomodulin,superfamily_RNI-like	HMMPfam_Tropomodulin,superfamily_RNI-like,HMMPfam_WH2	-	no_errors	
LOC100288229	0	genome.wustl.edu	37	17	43627199	43627199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43627199	43627199	C	T	SNP	LOC100288229	XM_002343565	human	genbank	57_37b	-1	model	missense	c.503	p.R168H	0.000	NULL	NULL	-	no_errors	
MAGEB4	4115	genome.wustl.edu	37	X	30260727	30260727	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	30260727	30260727	G	A	SNP	MAGEB4	NM_002367	human	genbank	57_37b	+1	reviewed	missense	c.475	p.E159K	0.001	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MAOA	4128	genome.wustl.edu	37	X	43603045	43603046	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	43603045	43603046	-	T	INS	MAOA	NM_000240	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1267_1268	p.R424fs	0.720:0.922	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	no_errors	
MCM4	4173	genome.wustl.edu	37	8	48887308	48887308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48887308	48887308	G	A	SNP	MCM4	NM_005914	human	genbank	57_37b	+1	reviewed	missense	c.2151	p.M717I	1.000	HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540	superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1	-	no_errors	
MELK	9833	genome.wustl.edu	37	9	36643017	36643017	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36643017	36643017	C	T	SNP	MELK	NM_014791	human	genbank	57_37b	+1	provisional	silent	c.858	p.C286	0.461	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF103243,HMMPfam_KA1	-	no_errors	
NCOA3	8202	genome.wustl.edu	37	20	46279836	46279836	+	Silent	SNP	A	A	G	rs2664522	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46279836	46279836	A	G	SNP	NCOA3	NM_181659	human	genbank	57_37b	+1	reviewed	silent	c.3762	p.Q1254	0.525	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-		
NF1	4763	genome.wustl.edu	37	17	29685563	29685563	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29685563	29685563	A	G	SNP	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	missense	c.8036	p.N2679S	1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors	
NKAIN4	128414	genome.wustl.edu	37	20	61881347	61881347	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61881347	61881347	G	C	SNP	NKAIN4	NM_152864	human	genbank	57_37b	-1	validated	missense	c.132	p.I44M	0.630	HMMPfam_NKAIN	HMMPfam_NKAIN	-	no_errors	
NOC3L	64318	genome.wustl.edu	37	10	96121599	96121599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96121599	96121599	G	A	SNP	NOC3L	NM_022451	human	genbank	57_37b	-1	provisional	missense	c.40	p.R14C	1.000	NULL	HMMPfam_NOC3p,HMMPfam_CBF	-	no_errors	
OBFC1	79991	genome.wustl.edu	37	10	105664860	105664860	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105664860	105664860	T	C	SNP	OBFC1	NM_024928	human	genbank	57_37b	-1	validated	missense	c.284	p.E95G	0.004	superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti	superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_DUF1879	-	no_errors	
ODZ2	57451	genome.wustl.edu	37	5	167671462	167671462	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167671462	167671462	G	A	SNP	ODZ2	NM_001122679	human	genbank	57_37b	+1	inferred	missense	c.5531	p.R1844Q	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OTOP3	347741	genome.wustl.edu	37	17	72943126	72943126	+	Silent	SNP	G	G	A	rs8066909	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72943126	72943126	G	A	SNP	OTOP3	NM_178233	human	genbank	57_37b	+1	provisional	silent	c.1176	p.A392	0.001	NULL	HMMPfam_DUF270	-		
PCDHGA3	56112	genome.wustl.edu	37	5	140724038	140724038	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140724038	140724038	G	A	SNP	PCDHGA3	NM_018916	human	genbank	57_37b	+1	reviewed	silent	c.438	p.T146	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178951964	178951964	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178951964	178951964	G	C	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.3019	p.G1007R	1.000	superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLCL2	23228	genome.wustl.edu	37	3	17052713	17052713	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	17052713	17052713	C	A	SNP	PLCL2	NM_015184	human	genbank	57_37b	+1	validated	nonsense	c.1497	p.C499*	0.869	superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
PLCL2	23228	genome.wustl.edu	37	3	17052713	17052713	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	17052713	17052713	C	A	SNP	PLCL2	NM_015184	human	genbank	57_37b	+1	validated	nonsense	c.1497	p.C499*	0.869	superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
PPP1R9A	55607	genome.wustl.edu	37	7	94540216	94540223	+	Frame_Shift_Del	DEL	GAGGTGTT	GAGGTGTT	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	GAGGTGTT	GAGGTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	94540216	94540223	GAGGTGTT	-	DEL	PPP1R9A	NM_017650	human	genbank	57_37b	+1	validated	frame_shift_del	c.791_798	p.G265fs	0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	(deletion:cds_exon[94539426,94540820])	no_errors	
PPP1R9A	55607	genome.wustl.edu	37	7	94540216	94540223	+	Frame_Shift_Del	DEL	GAGGTGTT	GAGGTGTT	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	GAGGTGTT	GAGGTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	94540216	94540223	GAGGTGTT	-	DEL	PPP1R9A	NM_017650	human	genbank	57_37b	+1	validated	frame_shift_del	c.791_798	p.G265fs	0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	(deletion:cds_exon[94539426,94540820])	no_errors	
PRUNE2	158471	genome.wustl.edu	37	9	79259823	79259823	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79259823	79259823	G	T	SNP	PRUNE2	NM_015225	human	genbank	57_37b	-1	validated	missense	c.8560	p.P2854T	0.030	NULL	superfamily_SSF64182,superfamily_Ferritin/RR_like,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	-	no_errors	
RIMS2	9699	genome.wustl.edu	37	8	104709351	104709351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	104709351	104709351	G	A	SNP	RIMS2	NM_001100117	human	genbank	57_37b	+1	validated	missense	c.214	p.V72I	1.000	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
RNF43	54894	genome.wustl.edu	37	17	56436109	56436109	+	Missense_Mutation	SNP	C	C	T	rs34523089	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56436109	56436109	C	T	SNP	RNF43	NM_017763	human	genbank	57_37b	-1	validated	missense	c.1028	p.R343H	0.999	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-		
SHROOM4	57477	genome.wustl.edu	37	X	50350711	50350713	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50350711	50350713	TCC	-	DEL	SHROOM4	NM_020717	human	genbank	57_37b	-1	reviewed	in_frame_del	c.3431_3429	p.E1147in_frame_del	0.003:0.003:0.000	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	(deletion:cds_exon[50350381,50351184])	no_errors	
TCFL5	10732	genome.wustl.edu	37	20	61488983	61488983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61488983	61488983	C	T	SNP	TCFL5	NM_006602	human	genbank	57_37b	-1	validated	silent	c.1002	p.A334	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors	
TOX2	84969	genome.wustl.edu	37	20	42680113	42680113	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42680113	42680113	G	A	SNP	TOX2	NM_001098797	human	genbank	57_37b	+1	validated	silent	c.579	p.P193	0.993	NULL	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179604078	179604078	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179604078	179604078	A	G	SNP	TTN	ENST00000342175	human	ensembl	57_37b	-1	known	missense	c.13369	p.S4457P	0.222	superfamily_Concanavalin A-like lectins/glucanases,superfamily_DBL homology domain (DH-domain),superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_DBL homology domain (DH-domain),superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
USP54	159195	genome.wustl.edu	37	10	75277121	75277121	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75277121	75277121	A	C	SNP	USP54	NM_152586	human	genbank	57_37b	-1	provisional	silent	c.3063	p.A1021	0.800	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH	-	no_errors	
ZNF124	7678	genome.wustl.edu	37	1	247320267	247320267	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0H9-01	TCGA-BH-A0H9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247320267	247320267	A	G	SNP	ZNF124	NM_003431	human	genbank	57_37b	-1	provisional	silent	c.471	p.N157	0.009	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
