Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAM22	53616	genome.wustl.edu	37	7	87564179	87564179	+	Missense_Mutation	SNP	G	C	C	rs2279541	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87564179	87564179	G	C	SNP	ADAM22	ENST00000429460	human	ensembl	57_37b	+1	known	missense	c.80	p.R27P	0.005	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1"	-		
ADPGK	83440	genome.wustl.edu	37	15	73048722	73048722	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	73048722	73048722	T	C	SNP	ADPGK	NM_031284	human	genbank	57_37b	-1	validated	missense	c.710	p.N237S	1.000	superfamily_SSF53613,HMMPfam_ADP_PFK_GK	superfamily_SSF53613,HMMPfam_ADP_PFK_GK	-	no_errors	
AQP7	364	genome.wustl.edu	37	9	33387044	33387044	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	33387044	33387044	T	-	DEL	AQP7	NM_001170	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.191	p.Y64fs	0.001	HMMPfam_MIP,superfamily_MIP	PatternScan_MIP,HMMPfam_MIP,superfamily_MIP	(deletion:cds_exon[33386967,33387090])	no_errors	
C21orf99	149992	genome.wustl.edu	37	21	14424808	14424808	+	RNA	SNP	A	C	C	rs4116581	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	14424808	14424808	A	C	SNP	C21orf99	NR_026916	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.004	-	-	-		
C8orf79	286032	genome.wustl.edu	37	8	12888743	12888743	+	Missense_Mutation	SNP	A	G	G	rs13281744	byCluster;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12888743	12888743	A	G	SNP	C8orf79	ENST00000447063	human	ensembl	57_37b	+1	known	missense	c.385	p.T129A	0.001	NULL	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-		
CDH3	1001	genome.wustl.edu	37	16	68714903	68714903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68714903	68714903	C	T	SNP	CDH3	NM_001793	human	genbank	57_37b	+1	reviewed	silent	c.900	p.A300	0.291	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
COL11A2	1302	genome.wustl.edu	37	6	33147259	33147259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33147259	33147259	C	T	SNP	COL11A2	NM_080680	human	genbank	57_37b	-1	reviewed	silent	c.1452	p.A484	0.007	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
CTSB	1508	genome.wustl.edu	37	8	11703257	11703257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11703257	11703257	C	T	SNP	CTSB	NM_001908	human	genbank	57_37b	-1	reviewed	missense	c.835	p.A279T	1.000	superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1,HMMSmart_SM00645,PatternScan_THIOL_PROTEASE_HIS	HMMPfam_Propeptide_C1,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1,HMMSmart_SM00645,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN	-	no_errors	
ENSG00000206833	0	genome.wustl.edu	37	16	57864527	57864527	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57864527	57864527	T	C	SNP	ENSG00000206833	ENST00000384106	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.003	-	-	-	no_errors	
ENSG00000223521	0	genome.wustl.edu	37	15	102312835	102312835	+	Silent	SNP	C	C	T	rs62026997	byCluster;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	102312835	102312835	C	T	SNP	ENSG00000223521	ENST00000448387	human	ensembl	57_37b	-1	known	silent	c.621	p.V207	0.004	NULL	NULL	-		
ENSG00000224476	0	genome.wustl.edu	37	19	41675813	41675813	+	Silent	SNP	C	T	T	rs115810579	byCluster;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41675813	41675813	C	T	SNP	ENSG00000224476	ENST00000438787	human	ensembl	57_37b	+1	known	silent	c.48	p.D16	1.000	HMMPfam_Ribosomal_L36e	HMMPfam_Ribosomal_L36e	-		
ENSG00000234905	0	genome.wustl.edu	37	1	149286469	149286469	+	Missense_Mutation	SNP	C	C	G	rs593071	byCluster;byFrequency;by2Hit2Allele	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149286469	149286469	C	G	SNP	ENSG00000234905	ENST00000429296	human	ensembl	57_37b	+1	known	missense	c.145	p.P49A	0.039	NULL	NULL	-		
ENSG00000245259	0	genome.wustl.edu	37	15	78290944	78290944	+	RNA	SNP	A	G	G	rs72732537	byCluster;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78290944	78290944	A	G	SNP	ENSG00000245259	ENST00000499334	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245567	0	genome.wustl.edu	37	5	39138379	39138379	+	RNA	SNP	T	C	C	rs7712546	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39138379	39138379	T	C	SNP	ENSG00000245567	ENST00000501729	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245660	0	genome.wustl.edu	37	22	36678118	36678118	+	RNA	SNP	C	C	T	rs136200	byCluster;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36678118	36678118	C	T	SNP	ENSG00000245660	ENST00000499812	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245974	0	genome.wustl.edu	37	1	171713468	171713468	+	RNA	SNP	A	C	C	rs10913578	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171713468	171713468	A	C	SNP	ENSG00000245974	ENST00000500454	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.012	-	-	-		
ENSG00000246051	0	genome.wustl.edu	37	19	58769790	58769790	+	RNA	SNP	T	T	G	rs260460	byCluster;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58769790	58769790	T	G	SNP	ENSG00000246051	ENST00000499062	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246106	0	genome.wustl.edu	37	5	80050981	80050981	+	RNA	SNP	T	G	G	rs26282	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	80050981	80050981	T	G	SNP	ENSG00000246106	ENST00000501340	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246490	0	genome.wustl.edu	37	6	53517228	53517228	+	RNA	SNP	A	A	C	rs41273882	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	53517228	53517228	A	C	SNP	ENSG00000246490	ENST00000501312	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247396	0	genome.wustl.edu	37	8	143740596	143740596	+	RNA	SNP	A	G	G	rs6988393	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143740596	143740596	A	G	SNP	ENSG00000247396	ENST00000501891	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.006	-	-	-		
ENSG00000247691	0	genome.wustl.edu	37	18	43430190	43430190	+	RNA	SNP	C	C	A	rs492411	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43430190	43430190	C	A	SNP	ENSG00000247691	ENST00000499252	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247718	0	genome.wustl.edu	37	3	129274655	129274655	+	RNA	SNP	C	T	T	rs1052883	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129274655	129274655	C	T	SNP	ENSG00000247718	ENST00000501038	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247765	0	genome.wustl.edu	37	15	21941718	21941718	+	RNA	SNP	C	C	G	rs1568351	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941718	21941718	C	G	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.008	-	-	-		
FER1L5	90342	genome.wustl.edu	37	2	97312826	97312826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97312826	97312826	G	A	SNP	FER1L5	NM_001113382	human	genbank	57_37b	+1	provisional	missense	c.164	p.R55H	0.000	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors	
HECW2	57520	genome.wustl.edu	37	2	197081794	197081794	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197081794	197081794	T	C	SNP	HECW2	NM_020760	human	genbank	57_37b	-1	provisional	missense	c.4432	p.I1478V	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HIST1H3G	8355	genome.wustl.edu	37	6	26271388	26271388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26271388	26271388	G	A	SNP	HIST1H3G	NM_003534	human	genbank	57_37b	-1	reviewed	silent	c.225	p.I75	1.000	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-	no_errors	
HTR3A	3359	genome.wustl.edu	37	11	113850001	113850001	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	113850001	113850001	T	G	SNP	HTR3A	NM_213621	human	genbank	57_37b	+1	reviewed	splice_site	c.264+2	e3+2	1.000	-	-	-	no_errors	
IQCG	84223	genome.wustl.edu	37	3	197670853	197670853	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197670853	197670853	G	A	SNP	IQCG	NM_001134435	human	genbank	57_37b	-1	validated	silent	c.78	p.G26	0.000	NULL	HMMPfam_IQ	-	no_errors	
KIAA0922	23240	genome.wustl.edu	37	4	154556719	154556719	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	154556719	154556719	C	T	SNP	KIAA0922	NM_015196	human	genbank	57_37b	+1	validated	missense	c.4550	p.S1517F	0.839	NULL	NULL	-	no_errors	
KIF21B	23046	genome.wustl.edu	37	1	200958025	200958025	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200958025	200958025	C	T	SNP	KIF21B	NM_017596	human	genbank	57_37b	-1	provisional	missense	c.3167	p.R1056Q	1.000	superfamily_WD40_like,superfamily_Prefoldin	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60927349	60927349	+	Silent	SNP	C	C	T	rs483876	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60927349	60927349	C	T	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	silent	c.636	p.A212	0.486	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-		
LOC100130691	0	genome.wustl.edu	37	2	178152463	178152463	+	RNA	SNP	G	C	C	rs56951837	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	178152463	178152463	G	C	SNP	LOC100130691	NR_026966	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
LOC100134259	0	genome.wustl.edu	37	2	47055169	47055169	+	RNA	SNP	T	C	C	rs1374274	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	47055169	47055169	T	C	SNP	LOC100134259	NR_024452	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.002	-	-	-		
LOC100290265	0	genome.wustl.edu	37	6	3376647	3376647	+	Missense_Mutation	SNP	T	T	C	rs913532	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	3376647	3376647	T	C	SNP	LOC100290265	XM_002346746	human	genbank	57_37b	+1	model	missense	c.587	p.F196S	0.000	NULL	NULL	-		
LOC100294254	0	genome.wustl.edu	37	6	2821901	2821901	+	Missense_Mutation	SNP	A	G	G	rs12529814	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	2821901	2821901	A	G	SNP	LOC100294254	XM_002344027	human	genbank	57_37b	-1	model	missense	c.341	p.L114S	0.001	NULL	NULL	-		
LOC389458	389458	genome.wustl.edu	37	7	5111830	5111830	+	RNA	SNP	T	T	C	rs62444320	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5111830	5111830	T	C	SNP	LOC389458	NR_015343	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
LOC646762	646762	genome.wustl.edu	37	7	29687420	29687420	+	RNA	SNP	T	C	C	rs1728639	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29687420	29687420	T	C	SNP	LOC646762	NR_024278	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.003	-	-	-		
LOC646762	646762	genome.wustl.edu	37	7	29687431	29687431	+	RNA	SNP	G	A	A	rs28573839	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29687431	29687431	G	A	SNP	LOC646762	NR_024278	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.097	-	-	-		
LRRC8E	80131	genome.wustl.edu	37	19	7965339	7965339	+	Silent	SNP	C	C	T	rs3745383	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7965339	7965339	C	T	SNP	LRRC8E	NM_025061	human	genbank	57_37b	+1	validated	silent	c.1932	p.Y644	0.092	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	-		
MLL3	58508	genome.wustl.edu	37	7	151859396	151859396	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151859396	151859396	C	-	DEL	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.11266	p.A3756fs	0.001	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	(deletion:cds_exon[151859202,151860911])	no_errors	
MUM1	84939	genome.wustl.edu	37	19	1376723	1376723	+	RNA	SNP	G	A	A	rs266805	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1376723	1376723	G	A	SNP	MUM1	NR_024247	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
MXRA5	25878	genome.wustl.edu	37	X	3238811	3238811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3238811	3238811	G	A	SNP	MXRA5	NM_015419	human	genbank	57_37b	-1	validated	missense	c.4915	p.P1639S	0.006	NULL	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors	
MYB	4602	genome.wustl.edu	37	6	135511376	135511377	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135511376	135511377	-	CA	INS	MYB	NM_001130173	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.418_419	p.E141fs	1.000:1.000	superfamily_Homeodomain-like	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Cmyb_C	-	no_errors	
NYNRIN	0	genome.wustl.edu	37	14	24884006	24884006	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24884006	24884006	C	T	SNP	NYNRIN	NM_025081	human	genbank	57_37b	+1	validated	silent	c.3051	p.D1017	0.000	NULL	superfamily_DNA/RNA polymerases,superfamily_Ribonuclease H-like	-	no_errors	
OR51C1P	0	genome.wustl.edu	37	11	4712353	4712353	+	Missense_Mutation	SNP	T	T	C	rs11033352	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4712353	4712353	T	C	SNP	OR51C1P	ENST00000357764	human	ensembl	57_37b	-1	known	missense	c.574	p.T192A	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PIWIL3	440822	genome.wustl.edu	37	22	25158460	25158460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25158460	25158460	C	T	SNP	PIWIL3	NM_001008496	human	genbank	57_37b	-1	validated	missense	c.7	p.G3S	0.736	NULL	superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi	-	no_errors	
RDH11	51109	genome.wustl.edu	37	14	68157923	68157923	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	68157923	68157923	C	T	SNP	RDH11	NM_016026	human	genbank	57_37b	-1	validated	missense	c.388	p.V130M	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36259138	36259139	+	Splice_Site	INS	-	-	C	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36259138	36259139	-	C	INS	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	splice_site_ins	c.351+1_351+1	e3+1	1.000:1.000	-	-	-	no_errors	
SFTA3	253970	genome.wustl.edu	37	14	36946266	36946266	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	36946266	36946266	G	A	SNP	SFTA3	NM_001101341	human	genbank	57_37b	-1	provisional	silent	c.171	p.V57	0.002	NULL	NULL	-	no_errors	
SHCBP1	79801	genome.wustl.edu	37	16	46617506	46617506	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	46617506	46617506	T	G	SNP	SHCBP1	NM_024745	human	genbank	57_37b	-1	validated	missense	c.1615	p.N539H	1.000	superfamily_Pectin lyase-like,HMMSmart_SM00710	superfamily_Pectin lyase-like,HMMSmart_SM00710	-	no_errors	
SNRNP40	9410	genome.wustl.edu	37	1	31769548	31769548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	31769548	31769548	G	A	SNP	SNRNP40	NM_004814	human	genbank	57_37b	-1	reviewed	silent	c.51	p.V17	0.849	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors	
TBX3	6926	genome.wustl.edu	37	12	115118782	115118782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115118782	115118782	G	A	SNP	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	missense	c.559	p.H187Y	1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
TMEM150A	129303	genome.wustl.edu	37	2	85826426	85826426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85826426	85826426	C	T	SNP	TMEM150A	NM_001031738	human	genbank	57_37b	-1	validated	missense	c.589	p.V197I	0.966	HMMPfam_Frag1	HMMPfam_Frag1	-	no_errors	
TMEM90B	79953	genome.wustl.edu	37	20	24524055	24524055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	24524055	24524055	G	A	SNP	TMEM90B	NM_024893	human	genbank	57_37b	+1	provisional	missense	c.322	p.A108T	0.000	NULL	HMMPfam_CD225	-	no_errors	
TRIM14	9830	genome.wustl.edu	37	9	100862246	100862246	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100862246	100862246	G	A	SNP	TRIM14	NM_014788	human	genbank	57_37b	-1	reviewed	silent	c.504	p.I168	0.005	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
UPF3B	65109	genome.wustl.edu	37	X	118971905	118971905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118971905	118971905	G	A	SNP	UPF3B	NM_080632	human	genbank	57_37b	-1	reviewed	missense	c.1117	p.R373C	0.892	NULL	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	-	no_errors	
VCL	7414	genome.wustl.edu	37	10	75843202	75843202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75843202	75843202	G	T	SNP	VCL	NM_014000	human	genbank	57_37b	+1	reviewed	missense	c.953	p.R318L	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	superfamily_alpha-catenin/vinculin,HMMPfam_Vinculin,PatternScan_VINCULIN_1,PatternScan_VINCULIN_2	-	no_errors	
ZFHX3	463	genome.wustl.edu	37	16	72830109	72830109	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HQ-01	TCGA-BH-A0HQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72830109	72830109	G	A	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	nonsense	c.6472	p.R2158*	1.000	HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
