Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADH7	131	genome.wustl.edu	37	4	100340221	100340221	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100340221	100340221	G	A	SNP	ADH7	NM_000673	human	genbank	57_37b	-1	reviewed	missense	c.919	p.P307S	0.868	superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N	superfamily_GroES_like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N	-	no_errors	
CDCP1	64866	genome.wustl.edu	37	3	45127233	45127234	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	45127233	45127234	CT	-	DEL	CDCP1	NM_022842	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2408_2407	p.S803fs	0.001:0.000	NULL	superfamily_Spermadhesin CUB domain	(deletion:cds_exon[45127130,45127559])	no_errors	
CDCP1	64866	genome.wustl.edu	37	3	45127239	45127246	+	Frame_Shift_Del	DEL	GACTCAGG	GACTCAGG	-	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	GACTCAGG	GACTCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	45127239	45127246	GACTCAGG	-	DEL	CDCP1	NM_022842	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2402_2395	p.P799fs	0.785:0.772:0.750:0.729:0.694:0.018:0.019:0.000	NULL	superfamily_Spermadhesin CUB domain	(deletion:cds_exon[45127130,45127559])	no_errors	
CDH4	1002	genome.wustl.edu	37	20	60498706	60498706	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60498706	60498706	C	T	SNP	CDH4	NM_001794	human	genbank	57_37b	+1	reviewed	silent	c.1572	p.T524	0.001	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CEP152	22995	genome.wustl.edu	37	15	49060439	49060439	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	49060439	49060439	A	C	SNP	CEP152	NM_014985	human	genbank	57_37b	-1	provisional	missense	c.1995	p.H665Q	0.994	NULL	NULL	-	no_errors	
ENOX1	55068	genome.wustl.edu	37	13	43930084	43930084	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	43930084	43930084	T	C	SNP	ENOX1	NM_001127615	human	genbank	57_37b	-1	validated	missense	c.794	p.E265G	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ENSG00000226382	0	genome.wustl.edu	37	19	781129	781129	+	RNA	SNP	G	A	A	rs117821352	by1000genomes	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	781129	781129	G	A	SNP	ENSG00000226382	ENST00000442073	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.002	-	-	-		
FAM123B	139285	genome.wustl.edu	37	X	63411027	63411027	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	63411027	63411027	G	C	SNP	FAM123B	NM_152424	human	genbank	57_37b	-1	validated	missense	c.2140	p.Q714E	0.999	NULL	HMMPfam_WTX	-	no_errors	
FBLN2	2199	genome.wustl.edu	37	3	13671349	13671349	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13671349	13671349	C	T	SNP	FBLN2	NM_001004019	human	genbank	57_37b	+1	reviewed	missense	c.2872	p.R958C	1.000	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181	HMMSmart_SM00181,HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8100382	8100382	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8100382	8100382	A	T	SNP	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	missense	c.356	p.K119M	1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GLI2	2736	genome.wustl.edu	37	2	121747788	121747788	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	121747788	121747788	C	T	SNP	GLI2	NM_005270	human	genbank	57_37b	+1	reviewed	missense	c.4298	p.P1433L	0.001	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ITGA8	8516	genome.wustl.edu	37	10	15634272	15634272	+	Missense_Mutation	SNP	C	C	T	rs9333174	byCluster;byFrequency	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15634272	15634272	C	T	SNP	ITGA8	NM_003638	human	genbank	57_37b	-1	provisional	missense	c.2243	p.R748H	0.946	HMMPfam_Integrin_alpha2,superfamily_SSF69179	superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-		
KIF26B	55083	genome.wustl.edu	37	1	245849622	245849622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245849622	245849622	G	A	SNP	KIF26B	NM_018012	human	genbank	57_37b	+1	provisional	missense	c.3337	p.V1113M	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	-	no_errors	
LIG3	3980	genome.wustl.edu	37	17	33316500	33316500	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33316500	33316500	C	G	SNP	LIG3	NM_013975	human	genbank	57_37b	+1	reviewed	missense	c.707	p.S236C	0.949	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_DNA_ligase_A_N,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A1,PatternScan_DNA_LIGASE_A2,HMMPfam_DNA_ligase_A_C,superfamily_BRCT domain,HMMSmart_SM00292	-	no_errors	
LOC100288693	0	genome.wustl.edu	37	15	31063058	31063058	+	Silent	SNP	A	A	G	rs4779777	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A18M-01	TCGA-BH-A18M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	31063058	31063058	A	G	SNP	LOC100288693	XM_002343360	human	genbank	57_37b	-1	model	silent	c.258	p.G86	0.000	NULL	NULL	-		
MAP3K1	4214	genome.wustl.edu	37	5	56178571	56178571	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178571	56178571	G	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.3544	p.E1182*	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MUC3A	4584	genome.wustl.edu	37	7	100551180	100551180	+	Silent	SNP	C	C	T	rs10248095	byCluster;by2Hit2Allele	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100551180	100551180	C	T	SNP	MUC3A	XM_001725354	human	genbank	57_37b	+1	model	silent	c.1761	p.P587	0.003	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-		
PGBD5	79605	genome.wustl.edu	37	1	230492718	230492718	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	230492718	230492718	G	A	SNP	PGBD5	NM_024554	human	genbank	57_37b	-1	reviewed	silent	c.771	p.H257	0.361	NULL	NULL	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A18M-01	TCGA-BH-A18M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
RAPGEF6	51735	genome.wustl.edu	37	5	130970657	130970657	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	130970657	130970657	C	T	SNP	RAPGEF6	NM_016340	human	genbank	57_37b	-1	validated	missense	c.67	p.E23K	0.982	superfamily_cAMP-binding domain-like	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors	
SF3B1	23451	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198266834	198266834	T	C	SNP	SF3B1	NM_012433	human	genbank	57_37b	-1	reviewed	missense	c.2098	p.K700E	1.000	superfamily_ARM repeat,HMMPfam_HEAT	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
SLMAP	7871	genome.wustl.edu	37	3	57843504	57843504	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57843504	57843504	G	A	SNP	SLMAP	NM_007159	human	genbank	57_37b	+1	validated	silent	c.564	p.T188	0.014	NULL	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_Prefoldin_2,PatternScan_FETUIN_2	-	no_errors	
SRGAP1	57522	genome.wustl.edu	37	12	64472859	64472859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64472859	64472859	G	A	SNP	SRGAP1	NM_020762	human	genbank	57_37b	+1	validated	missense	c.1286	p.R429K	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
ST18	9705	genome.wustl.edu	37	8	53050007	53050007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	53050007	53050007	C	T	SNP	ST18	NM_014682	human	genbank	57_37b	-1	validated	silent	c.2205	p.V735	0.989	superfamily_SSF103637,HMMPfam_zf-C2HC	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1	-	no_errors	
TCEAL3	85012	genome.wustl.edu	37	X	102864406	102864408	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	102864406	102864408	GAT	-	DEL	TCEAL3	NM_001006933	human	genbank	57_37b	+1	reviewed	in_frame_del	c.414_416	p.M140in_frame_del	0.998:0.991:0.986	HMMPfam_TFA	HMMPfam_TFA	(deletion:cds_exon[102863993,102864595])	no_errors	
UNC5D	137970	genome.wustl.edu	37	8	35579891	35579891	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	35579891	35579891	C	A	SNP	UNC5D	NM_080872	human	genbank	57_37b	+1	validated	missense	c.1281	p.F427L	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors	
VWF	7450	genome.wustl.edu	37	12	6091157	6091157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18M-01	TCGA-BH-A18M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6091157	6091157	G	A	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	missense	c.7082	p.A2361V	1.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
