Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ENSG00000245549	0	genome.wustl.edu	37	1	16950252	16950252	+	RNA	DEL	G	G	-	rs140356375	byCluster;by1000genomes	TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501442	+1	novel	NULL	0.356	-	-	-	-	-	-	-	-	-	-
TMCO4	255104	genome.wustl.edu	37	1	20107210	20107210	+	Silent	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181719.4	-1	validated	p.Q14	0.035	19	0%	18	55.6%	9	44.4%	-	-	-	NULL
LCE2C	353140	genome.wustl.edu	37	1	152648586	152648586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178429.2	+1	validated	p.C32F	0.001	549	0.2%	965	22.4%	0	-	unknown(0)	-	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152732998	152732998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025231.1	+1	provisional	p.R312C	0.000	39	0%	61	23%	0	-	possibly_damaging(0.703)	tolerated(0.09)	deleterious(0.549)	NULL
CD1C	911	genome.wustl.edu	37	1	158261109	158261109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001765.2	+1	reviewed	p.D83Y	0.000	237	0%	401	72.6%	0	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
ADCY3	109	genome.wustl.edu	37	2	25042928	25042928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004036.3	-1	reviewed	p.R1103Q	1.000	58	0%	73	46.6%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase
SERTAD2	9792	genome.wustl.edu	37	2	64863705	64863705	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014755.2	-1	validated	p.R101*	1.000	90	0%	102	50%	4	50%	-	-	-	NULL
GPR39	2863	genome.wustl.edu	37	2	133402828	133402828	+	Silent	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.S337	0.135	114	0.9%	115	50.4%	43	44.1%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAP	2191	genome.wustl.edu	37	2	163070551	163070551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004460.2	-1	reviewed	p.T300I	0.967	150	0%	167	50.3%	0	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_DPPIV_N,superfamily_SSF82171
ATG9A	79065	genome.wustl.edu	37	2	220088389	220088389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077198.1	-1	validated	p.R506Q	1.000	114	0%	87	43.7%	21	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APG9
HTR3C	170572	genome.wustl.edu	37	3	183772635	183772635	+	Missense_Mutation	SNP	G	G	A	rs183919204	by1000genomes	TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130770.2	+1	reviewed	p.R65H	0.000	140	0.7%	133	49.6%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
FBXW7	55294	genome.wustl.edu	37	4	153244092	153244092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R689W	1.000	490	0%	409	44%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320
PCDHGB3	56102	genome.wustl.edu	37	5	140751467	140751467	+	Silent	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018924.2	+1	reviewed	p.S502	0.002	18	0%	22	50%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ENSG00000229119	0	genome.wustl.edu	37	5	165809567	165809567	+	Silent	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449646	+1	known	p.S86	1.000	134	0%	143	31.5%	1912	0%	-	-	-	HMMPfam_Ribosomal_60s
ODZ2	57451	genome.wustl.edu	37	5	166802271	166802271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.D99N	1.000	61	0%	63	39.7%	0	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_Ten_N
RIPK1	8737	genome.wustl.edu	37	6	3085631	3085631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003804.3	+1	validated	p.P276L	0.998	125	0%	135	40.7%	6	66.6%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PGBD1	84547	genome.wustl.edu	37	6	28269865	28269865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032507.3	+1	reviewed	p.I745T	0.904	280	0%	263	49.4%	0	-	possibly_damaging(0.722)	tolerated(0.07)	deleterious(0.581)	NULL
COL12A1	1303	genome.wustl.edu	37	6	75814951	75814951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.V2746I	0.945	158	0%	182	48.9%	11	18.1%	unknown(0)	-	-	NULL
ENPP1	5167	genome.wustl.edu	37	6	132195422	132195422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006208.2	+1	reviewed	p.R527M	0.004	344	0%	355	36.9%	1	100%	benign(0.186)	tolerated(0.14)	neutral(0.267)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
PPP1R3A	5506	genome.wustl.edu	37	7	113518304	113518304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.T948M	0.004	177	0.6%	154	56.5%	0	-	possibly_damaging(0.859)	deleterious(0)	deleterious(0.776)	NULL
AGPAT5	55326	genome.wustl.edu	37	8	6614840	6614840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018361.3	+1	reviewed	p.R342S	1.000	316	0%	337	46.6%	17	64.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOX17	64321	genome.wustl.edu	37	8	55372518	55372518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022454.3	+1	reviewed	p.S403I	1.000	32	0%	36	58.3%	532	46.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM83H	286077	genome.wustl.edu	37	8	144808129	144808129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198488.3	-1	reviewed	p.V1168M	1.000	18	0%	22	45.5%	25	36%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
C9orf152	401546	genome.wustl.edu	37	9	112969712	112969712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012993.2	-1	validated	p.K50E	0.980	113	0.9%	112	35.7%	4	50%	benign(0.401)	deleterious(0.05)	deleterious(0.474)	NULL
PTEN	5728	genome.wustl.edu	37	10	89720650	89720650	+	Splice_Site	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	e8-1	1.000	141	0%	104	94.2%	0	-	-	-	-	-
JAKMIP3	282973	genome.wustl.edu	37	10	133954024	133954024	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105521.2	+1	provisional	p.S472T	1.000	96	0%	80	45%	0	-	possibly_damaging(0.444)	deleterious(0.01)	deleterious(0.550)	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47365114	47365114	+	Silent	SNP	G	G	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000256.3	-1	reviewed	p.T384	0.138	121	0%	121	47.1%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
MS4A1	931	genome.wustl.edu	37	11	60233393	60233393	+	Splice_Site	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021950.3	+1	reviewed	e4-1	1.000	195	0%	171	53.2%	0	-	-	-	-	-
OTUB1	55611	genome.wustl.edu	37	11	63765247	63765247	+	RNA	SNP	C	C	T	rs55951521	byCluster;byFrequency;by1000genomes	TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003089.1	+1	reviewed	NULL	0.000	1	0.000	4	1.000	69	63.7%	-	-	-	-
CHD4	1108	genome.wustl.edu	37	12	6697106	6697106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.R1159G	1.000	124	0%	134	44.8%	66	48.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC9	10060	genome.wustl.edu	37	12	22015985	22015985	+	Silent	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005691.2	-1	reviewed	p.R747	1.000	140	0%	158	41.8%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
OTOGL	283310	genome.wustl.edu	37	12	80771812	80771812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.T2246M	0.999	192	0%	178	46.6%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00041
SPTB	6710	genome.wustl.edu	37	14	65219006	65219007	+	Frame_Shift_Ins	INS	-	-	CTCCT	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335612	-1	known	p.E995fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00150,superfamily_PH domain-like
FAM98B	283742	genome.wustl.edu	37	15	38776549	38776549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173611.2	+1	validated	p.G331S	0.997	53	0%	63	30.2%	18	55.5%	unknown(0)	tolerated(0.12)	-	HMMPfam_DUF2465
THBS1	7057	genome.wustl.edu	37	15	39881531	39881531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397593	+1	known	p.S68L	0.009	71	0%	91	16.5%	173	21.9%	unknown(0)	-	-	NULL
USP8	9101	genome.wustl.edu	37	15	50769543	50769543	+	Silent	SNP	T	T	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.S355	0.464	151	0%	149	47%	8	25%	-	-	-	NULL
MYH11	4629	genome.wustl.edu	37	16	15844130	15844130	+	Silent	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.S648	0.670	123	0%	107	48.6%	6	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
CNOT1	23019	genome.wustl.edu	37	16	58610458	58610458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.I538T	1.000	401	0%	362	46.1%	51	49%	benign(0.025)	tolerated(0.06)	neutral(0.324)	NULL
FAM101B	359845	genome.wustl.edu	37	17	295704	295704	+	Silent	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182705.2	-1	validated	p.P10L	0.000	61	0%	64	42.2%	4	50%	-	-	-	NULL
MYH4	4622	genome.wustl.edu	37	17	10348573	10348573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.A1759G	1.000	614	0%	605	19%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10363578	10363578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.C403F	1.000	248	0%	256	46.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
TMEM11	8834	genome.wustl.edu	37	17	21101964	21101964	+	Silent	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003876.2	-1	validated	p.T84	1.000	37	0%	41	17.1%	40	35%	-	-	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40395971	40395971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.V2476M	0.378	172	0%	121	17.4%	6	0%	unknown(0)	tolerated(0.06)	-	HMMPfam_VWD,HMMSmart_VWD
AXL	558	genome.wustl.edu	37	19	41745068	41745068	+	Splice_Site	SNP	G	G	C	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021913.3	+1	reviewed	e9-1	1.000	147	0%	137	18.2%	0	-	-	-	-	-
GPR4	2828	genome.wustl.edu	37	19	46094994	46094994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005282.2	-1	validated	p.R44H	0.999	44	0%	42	38.1%	5	0%	possibly_damaging(0.907)	tolerated(0.12)	deleterious(0.621)	HMMPfam_7tm_1,superfamily_SSF81321
KLK6	5653	genome.wustl.edu	37	19	51466671	51466671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012964.1	-1	reviewed	p.R111H	0.002	154	0%	145	48.3%	0	-	benign(0.133)	tolerated(0.18)	neutral(0.067)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ARVCF	421	genome.wustl.edu	37	22	19961187	19961187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001670.1	-1	reviewed	p.R740W	1.000	22	0%	27	25.9%	23	26%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	superfamily_ARM repeat
WWC3	55841	genome.wustl.edu	37	X	10093129	10093129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.A631V	0.000	43	0%	49	46.9%	1	0%	benign(0)	tolerated(1)	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MAP7D2	256714	genome.wustl.edu	37	X	20071071	20071071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.P174T	1.000	401	0%	436	41.7%	3	0%	possibly_damaging(0.916)	tolerated(0.6)	neutral(0.371)	NULL
HNRNPH2	3188	genome.wustl.edu	37	X	100668007	100668007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032393.1	+1	reviewed	p.A344fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RHOXF1	158800	genome.wustl.edu	37	X	119249509	119249509	+	Silent	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139282.1	-1	provisional	p.P88	0.000	39	0%	40	37.5%	0	-	-	-	-	superfamily_Homeodomain_like
IGSF1	3547	genome.wustl.edu	37	X	130411977	130411977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.Q725K	1.000	375	0%	369	45.8%	0	-	possibly_damaging(0.916)	tolerated(0.35)	neutral(0.388)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RAP2C	57826	genome.wustl.edu	37	X	131348375	131348375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A13C-01	TCGA-BK-A13C-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021183.3	-1	provisional	p.E125K	1.000	302	0.7%	262	44.3%	7	85.7%	possibly_damaging(0.92)	tolerated(0.58)	neutral(0.376)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
