Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANO2	57101	hgsc.bcm.edu	37	12	5744453	5744453	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP21	57584	hgsc.bcm.edu	37	10	24886905	24886905	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASAP1	50807	hgsc.bcm.edu	37	8	131130417	131130417	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP6V1C2	245973	hgsc.bcm.edu	37	2	10923347	10923347	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1RL	51279	hgsc.bcm.edu	37	12	7249550	7249550	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COCH	1690	hgsc.bcm.edu	37	14	31348659	31348659	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL20A1	57642	hgsc.bcm.edu	37	20	61929274	61929274	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CPAMD8	27151	hgsc.bcm.edu	37	19	17068709	17068709	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYLC1	1538	hgsc.bcm.edu	37	X	83128851	83128851	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX37	57647	hgsc.bcm.edu	37	12	125435249	125435249	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUOX1	53905	hgsc.bcm.edu	37	15	45436426	45436426	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FLNA	2316	hgsc.bcm.edu	37	X	153593804	153593804	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FOXP3	50943	hgsc.bcm.edu	37	X	49113206	49113206	+	Splice_Site	SNP	A	A	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HDHD1	8226	hgsc.bcm.edu	37	X	7035035	7035035	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HHLA1	10086	hgsc.bcm.edu	37	8	133111178	133111178	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HRH2	3274	hgsc.bcm.edu	37	5	175111276	175111276	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL25	64806	hgsc.bcm.edu	37	14	23844833	23844833	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNJ4	3761	hgsc.bcm.edu	37	22	38823945	38823945	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LATS2	26524	hgsc.bcm.edu	37	13	21557669	21557669	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYO18B	84700	hgsc.bcm.edu	37	22	26348307	26348307	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NF1	4763	hgsc.bcm.edu	37	17	29670103	29670103	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NKAP	79576	hgsc.bcm.edu	37	X	119059315	119059315	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NR5A2	2494	hgsc.bcm.edu	37	1	200014705	200014705	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGC5	56097	hgsc.bcm.edu	37	5	140870962	140870962	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PFKM	5213	hgsc.bcm.edu	37	12	48526705	48526705	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTCH1	5727	hgsc.bcm.edu	37	9	98231032	98231032	+	Splice_Site	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89653858	89653860	+	In_Frame_Del	DEL	TGT	TGT	-	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	TGT	TGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89653859	89653861	+	In_Frame_Del	DEL	GTA	GTA	-	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	GTA	GTA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89653861	89653861	+	Silent	SNP	A	A	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTP4A3	11156	hgsc.bcm.edu	37	8	142437880	142437880	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RALB	5899	hgsc.bcm.edu	37	2	121036308	121036308	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SELE	6401	hgsc.bcm.edu	37	1	169701067	169701067	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47165441	47165442	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC17A2	10246	hgsc.bcm.edu	37	6	25923943	25923943	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC27A3	11000	hgsc.bcm.edu	37	1	153750666	153750666	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLITRK1	114798	hgsc.bcm.edu	37	13	84453865	84453865	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMTN	6525	hgsc.bcm.edu	37	22	31496960	31496960	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD9	57519	hgsc.bcm.edu	37	15	42985732	42985732	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMC7	79905	hgsc.bcm.edu	37	16	19070743	19070743	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM131	23505	hgsc.bcm.edu	37	2	98373848	98373848	+	Splice_Site	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TOR1AIP1	26092	hgsc.bcm.edu	37	1	179869288	179869288	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIP4	9325	hgsc.bcm.edu	37	15	64717797	64717797	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRPM6	140803	hgsc.bcm.edu	37	9	77436728	77436728	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDFY3	23001	hgsc.bcm.edu	37	4	85724467	85724467	+	Silent	SNP	A	A	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF182	7569	hgsc.bcm.edu	37	X	47836677	47836677	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF550	162972	hgsc.bcm.edu	37	19	58067635	58067635	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF92	168374	hgsc.bcm.edu	37	7	64852852	64852852	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZSWIM6	57688	hgsc.bcm.edu	37	5	60839363	60839364	+	Frame_Shift_Del	DEL	CC	CC	-	novel	.	TCGA-BP-4326-01	TCGA-BP-4326-01	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
