Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AHCYL1	10768	hgsc.bcm.edu	37	1	110553923	110553923	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ALDH4A1	8659	hgsc.bcm.edu	37	1	19202926	19202926	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AP3D1	8943	hgsc.bcm.edu	37	19	2121803	2121803	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID1A	8289	hgsc.bcm.edu	37	1	27101352	27101352	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CR1	1378	hgsc.bcm.edu	37	1	207791580	207791580	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DTNA	1837	hgsc.bcm.edu	37	18	32431802	32431802	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ECHS1	1892	hgsc.bcm.edu	37	10	135179506	135179506	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM129A	116496	hgsc.bcm.edu	37	1	184764659	184764659	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM47A	158724	hgsc.bcm.edu	37	X	34149721	34149721	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GALNS	2588	hgsc.bcm.edu	37	16	88908325	88908325	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HAUS1	115106	hgsc.bcm.edu	37	18	43708041	43708041	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HELQ	113510	hgsc.bcm.edu	37	4	84350864	84350864	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HPGDS	27306	hgsc.bcm.edu	37	4	95229888	95229888	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ICAM1	3383	hgsc.bcm.edu	37	19	10394734	10394734	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC55	219527	hgsc.bcm.edu	37	11	56950122	56950122	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP4K5	11183	hgsc.bcm.edu	37	14	50952347	50952348	+	Frame_Shift_Del	DEL	AT	AT	-	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	AT	AT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MLL2	8085	hgsc.bcm.edu	37	12	49438038	49438038	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MMAA	166785	hgsc.bcm.edu	37	4	146560425	146560425	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFKBIB	4793	hgsc.bcm.edu	37	19	39390845	39390845	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NPR1	4881	hgsc.bcm.edu	37	1	153660245	153660246	+	Frame_Shift_Del	DEL	GT	GT	-	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OAS3	4940	hgsc.bcm.edu	37	12	113405908	113405908	+	Nonsense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OGT	8473	hgsc.bcm.edu	37	X	70776831	70776831	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52712580	52712580	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDZRN4	29951	hgsc.bcm.edu	37	12	41966392	41966392	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKD1L2	114780	hgsc.bcm.edu	37	16	81232574	81232574	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PUM1	9698	hgsc.bcm.edu	37	1	31479895	31479895	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RORB	6096	hgsc.bcm.edu	37	9	77282715	77282715	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPL22L1	200916	hgsc.bcm.edu	37	3	170584200	170584200	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEC14L4	284904	hgsc.bcm.edu	37	22	30888522	30888522	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SGK269	79834	hgsc.bcm.edu	37	15	77407312	77407312	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC41A3	54946	hgsc.bcm.edu	37	3	125725333	125725333	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC46A1	113235	hgsc.bcm.edu	37	17	26727778	26727778	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMYD2	56950	hgsc.bcm.edu	37	1	214488133	214488133	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STAP1	26228	hgsc.bcm.edu	37	4	68436805	68436805	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TGM6	343641	hgsc.bcm.edu	37	20	2380980	2380980	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNS1	7145	hgsc.bcm.edu	37	2	218673368	218673368	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10188246	10188246	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZDHHC11	79844	hgsc.bcm.edu	37	5	819652	819653	+	Frame_Shift_Ins	INS	-	-	C	novel	.	TCGA-BP-4329-01	TCGA-BP-4329-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
