Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACTRT1	139741	hgsc.bcm.edu	37	X	127185831	127185831	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AGL	178	hgsc.bcm.edu	37	1	100343224	100343225	+	Frame_Shift_Ins	INS	-	-	TA	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKR1B1	231	hgsc.bcm.edu	37	7	134136494	134136494	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP8	23779	hgsc.bcm.edu	37	22	45255656	45255656	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASB8	140461	hgsc.bcm.edu	37	12	48547222	48547222	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BIRC2	329	hgsc.bcm.edu	37	11	102239263	102239263	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3orf75	54859	hgsc.bcm.edu	37	3	47551730	47551730	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1S	779	hgsc.bcm.edu	37	1	201058500	201058500	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCBP2	1238	hgsc.bcm.edu	37	3	42906057	42906057	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC57	284001	hgsc.bcm.edu	37	17	80130525	80130525	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLCN5	1184	hgsc.bcm.edu	37	X	49853520	49853520	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLIP1	6249	hgsc.bcm.edu	37	12	122812845	122812845	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL6A2	1292	hgsc.bcm.edu	37	21	47532439	47532439	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHRS2	10202	hgsc.bcm.edu	37	14	24108525	24108525	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPM2	8818	hgsc.bcm.edu	37	9	130698858	130698858	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EDNRA	1909	hgsc.bcm.edu	37	4	148463689	148463689	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EHBP1	23301	hgsc.bcm.edu	37	2	63175596	63175596	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GOLGB1	2804	hgsc.bcm.edu	37	3	121415214	121415214	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRLF1	2909	hgsc.bcm.edu	37	19	47424564	47424564	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRT76	51350	hgsc.bcm.edu	37	12	53162773	53162773	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAGI3	260425	hgsc.bcm.edu	37	1	114157263	114157263	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MGEA5	10724	hgsc.bcm.edu	37	10	103547234	103547234	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MLL3	58508	hgsc.bcm.edu	37	7	151882665	151882665	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MSRB3	253827	hgsc.bcm.edu	37	12	65856991	65856991	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTHFD1	4522	hgsc.bcm.edu	37	14	64891605	64891605	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYST4	23522	hgsc.bcm.edu	37	10	76788758	76788758	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFXL1	152518	hgsc.bcm.edu	37	4	47892656	47892656	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ODZ4	26011	hgsc.bcm.edu	37	11	78565192	78565192	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OXER1	165140	hgsc.bcm.edu	37	2	42991163	42991163	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGB6	56100	hgsc.bcm.edu	37	5	140789833	140789833	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PNLIPRP3	119548	hgsc.bcm.edu	37	10	118228715	118228715	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLL	27343	hgsc.bcm.edu	37	10	103345150	103345150	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAGE	5891	hgsc.bcm.edu	37	14	102699021	102699021	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RANBP10	57610	hgsc.bcm.edu	37	16	67763369	67763369	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPH3AL	9501	hgsc.bcm.edu	37	17	171082	171082	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAGE1	55511	hgsc.bcm.edu	37	X	134992605	134992605	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC22A25	387601	hgsc.bcm.edu	37	11	62984813	62984813	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC25A19	60386	hgsc.bcm.edu	37	17	73279618	73279618	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC35A4	113829	hgsc.bcm.edu	37	5	139946945	139946946	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC37A3	84255	hgsc.bcm.edu	37	7	140035229	140035229	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ST6GALNAC3	256435	hgsc.bcm.edu	37	1	77094396	77094396	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TG	7038	hgsc.bcm.edu	37	8	133941401	133941401	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TYK2	7297	hgsc.bcm.edu	37	19	10468470	10468470	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP4	7375	hgsc.bcm.edu	37	3	49321434	49321434	+	Silent	SNP	T	T	A	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VSIG10	54621	hgsc.bcm.edu	37	12	118506355	118506355	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZSCAN2	54993	hgsc.bcm.edu	37	15	85164205	85164205	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4756-01	TCGA-BP-4756-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
