Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA5	23461	hgsc.bcm.edu	37	17	67264115	67264115	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAL	161823	hgsc.bcm.edu	37	15	43638090	43638090	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC120	90060	hgsc.bcm.edu	37	X	48919829	48919829	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC144NL	339184	hgsc.bcm.edu	37	17	20769899	20769899	+	Nonsense_Mutation	SNP	G	G	T	rs79930314	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCNK	8812	hgsc.bcm.edu	37	14	99959139	99959139	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD300LG	146894	hgsc.bcm.edu	37	17	41931333	41931334	+	Frame_Shift_Ins	INS	-	-	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CENPA	1058	hgsc.bcm.edu	37	2	27015008	27015008	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLEC14A	161198	hgsc.bcm.edu	37	14	38723784	38723784	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL5A3	50509	hgsc.bcm.edu	37	19	10114740	10114740	+	Missense_Mutation	SNP	T	T	A	rs62104337	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COQ6	51004	hgsc.bcm.edu	37	14	74428169	74428169	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CPS1	1373	hgsc.bcm.edu	37	2	211518750	211518750	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CWC22	57703	hgsc.bcm.edu	37	2	180819021	180819021	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOM3Z	1797	hgsc.bcm.edu	37	6	31939209	31939209	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPP8	54878	hgsc.bcm.edu	37	15	65780068	65780068	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DYRK2	8445	hgsc.bcm.edu	37	12	68052359	68052359	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EEF1A1	1915	hgsc.bcm.edu	37	6	74228564	74228564	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAAH	2166	hgsc.bcm.edu	37	1	46878796	46878796	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GAGE10	643832	hgsc.bcm.edu	37	X	49173718	49173718	+	Silent	SNP	C	C	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR97	222487	hgsc.bcm.edu	37	16	57719575	57719575	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPRIN1	114787	hgsc.bcm.edu	37	5	176026143	176026143	+	Silent	SNP	C	C	T	rs77245696	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPSM1	26086	hgsc.bcm.edu	37	9	139234168	139234168	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF2A1L	11036	hgsc.bcm.edu	37	2	48896938	48896938	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GXYLT1	283464	hgsc.bcm.edu	37	12	42481609	42481609	+	Silent	SNP	G	G	A	rs112245628	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GXYLT1	283464	hgsc.bcm.edu	37	12	42481617	42481617	+	Missense_Mutation	SNP	G	G	C	rs75740340	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-C	3107	hgsc.bcm.edu	37	6	31237817	31237817	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32552096	32552096	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32552100	32552100	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32552117	32552117	+	Missense_Mutation	SNP	A	A	G	rs114435757	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32489839	32489839	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNJ12	3768	hgsc.bcm.edu	37	17	21318948	21318948	+	Silent	SNP	C	C	T	rs112314728	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNN1	3780	hgsc.bcm.edu	37	19	18100537	18100537	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNN4	3783	hgsc.bcm.edu	37	19	44276215	44276215	+	Silent	SNP	G	G	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0664	23277	hgsc.bcm.edu	37	17	2597324	2597324	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLHDC5	57542	hgsc.bcm.edu	37	12	27944776	27944776	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LHFPL4	375323	hgsc.bcm.edu	37	3	9543917	9543917	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MATN2	4147	hgsc.bcm.edu	37	8	99028832	99028832	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MBD1	4152	hgsc.bcm.edu	37	18	47799782	47799782	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
METTL4	64863	hgsc.bcm.edu	37	18	2555005	2555005	+	Silent	SNP	C	C	T	rs61730027	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MXD4	10608	hgsc.bcm.edu	37	4	2254228	2254228	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NF1	4763	hgsc.bcm.edu	37	17	29663789	29663789	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PMM1	5372	hgsc.bcm.edu	37	22	41973900	41973900	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPFIBP1	8496	hgsc.bcm.edu	37	12	27787873	27787873	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRDM7	11105	hgsc.bcm.edu	37	16	90130158	90130158	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRSS3	5646	hgsc.bcm.edu	37	9	33798037	33798037	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSKH1	5681	hgsc.bcm.edu	37	16	67943579	67943579	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RASAL3	64926	hgsc.bcm.edu	37	19	15565261	15565261	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RSPRY1	89970	hgsc.bcm.edu	37	16	57261305	57261305	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEMA3D	223117	hgsc.bcm.edu	37	7	84710863	84710863	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEPT1	1731	hgsc.bcm.edu	37	16	30389840	30389840	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47164514	47164514	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SHANK3	85358	hgsc.bcm.edu	37	22	51117787	51117787	+	Silent	SNP	T	T	C	rs73172299	unknown	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC25A5	292	hgsc.bcm.edu	37	X	118604412	118604412	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC36A2	153201	hgsc.bcm.edu	37	5	150704898	150704898	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC39A6	25800	hgsc.bcm.edu	37	18	33706899	33706899	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMARCB1	6598	hgsc.bcm.edu	37	22	24175794	24175794	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYBU	55638	hgsc.bcm.edu	37	8	110590177	110590177	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D13	54662	hgsc.bcm.edu	37	9	131553914	131553914	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM200C	645369	hgsc.bcm.edu	37	18	5891547	5891547	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTN	7273	hgsc.bcm.edu	37	2	179399907	179399907	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TUB	7275	hgsc.bcm.edu	37	11	8118839	8118839	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPOT	11260	hgsc.bcm.edu	37	12	64818820	64818820	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZC3H13	23091	hgsc.bcm.edu	37	13	46539482	46539482	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFR	51663	hgsc.bcm.edu	37	5	32355948	32355948	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFYVE26	23503	hgsc.bcm.edu	37	14	68260458	68260458	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF566	84924	hgsc.bcm.edu	37	19	36940081	36940081	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4759-01	TCGA-BP-4759-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
