Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAMTS20	80070	hgsc.bcm.edu	37	12	43825141	43825141	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARSD	414	hgsc.bcm.edu	37	X	2832696	2832696	+	Silent	SNP	T	T	C	rs113031742	unknown	TCGA-BP-4781-01	TCGA-BP-4781-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARSD	414	hgsc.bcm.edu	37	X	2832708	2832708	+	Silent	SNP	G	G	T	rs112408163	unknown	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C14orf101	54916	hgsc.bcm.edu	37	14	57113992	57113992	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf77	129881	hgsc.bcm.edu	37	2	170505754	170505754	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CALCR	799	hgsc.bcm.edu	37	7	93116284	93116284	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CAMSAP1	157922	hgsc.bcm.edu	37	9	138703339	138703339	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CBLL1	79872	hgsc.bcm.edu	37	7	107395874	107395874	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC144A	9720	hgsc.bcm.edu	37	17	16638643	16638644	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRYBB3	1417	hgsc.bcm.edu	37	22	25597418	25597418	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
E2F5	1875	hgsc.bcm.edu	37	8	86118418	86118418	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EGR2	1959	hgsc.bcm.edu	37	10	64573811	64573811	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERCC4	2072	hgsc.bcm.edu	37	16	14041533	14041533	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
F5	2153	hgsc.bcm.edu	37	1	169510701	169510701	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM194B	220081	hgsc.bcm.edu	37	13	46170733	46170734	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM200B	285550	hgsc.bcm.edu	37	4	15688806	15688806	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM71D	161142	hgsc.bcm.edu	37	14	67671485	67671485	+	Silent	SNP	A	A	T	rs55981040	unknown	TCGA-BP-4781-01	TCGA-BP-4781-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FGF8	2253	hgsc.bcm.edu	37	10	103534502	103534502	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FUCA2	2519	hgsc.bcm.edu	37	6	143825091	143825091	+	Nonsense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL17RC	84818	hgsc.bcm.edu	37	3	9960273	9960273	+	Missense_Mutation	SNP	G	G	C	rs112627391	unknown	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNH8	131096	hgsc.bcm.edu	37	3	19492864	19492864	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP1B	53353	hgsc.bcm.edu	37	2	141259355	141259355	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAA25	80018	hgsc.bcm.edu	37	12	112498998	112498998	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEK5	341676	hgsc.bcm.edu	37	13	52649897	52649897	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOTCH3	4854	hgsc.bcm.edu	37	19	15278141	15278141	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCYT2	5833	hgsc.bcm.edu	37	17	79866843	79866843	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDS5A	23244	hgsc.bcm.edu	37	4	39905679	39905679	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHG4B	153478	hgsc.bcm.edu	37	5	145006	145006	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PSMD13	5719	hgsc.bcm.edu	37	11	244167	244167	+	Silent	SNP	C	C	T	rs1128320	unknown	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PYROXD2	84795	hgsc.bcm.edu	37	10	100152266	100152266	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNF216	54476	hgsc.bcm.edu	37	7	5781389	5781389	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAGE1	55511	hgsc.bcm.edu	37	X	134991924	134991924	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC36A3	285641	hgsc.bcm.edu	37	5	150666901	150666901	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC4A10	57282	hgsc.bcm.edu	37	2	162821636	162821636	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLITRK4	139065	hgsc.bcm.edu	37	X	142718802	142718802	+	Silent	SNP	G	G	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPDYE4	388333	hgsc.bcm.edu	37	17	8660584	8660584	+	Silent	SNP	G	G	C	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TET2	54790	hgsc.bcm.edu	37	4	106155681	106155681	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TUFT1	7286	hgsc.bcm.edu	37	1	151512886	151512886	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WAC	51322	hgsc.bcm.edu	37	10	28897283	28897283	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPA	7507	hgsc.bcm.edu	37	9	100437766	100437766	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFAT	57623	hgsc.bcm.edu	37	8	135613761	135613761	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF717	100131827	hgsc.bcm.edu	37	3	75787936	75787936	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4781-01	TCGA-BP-4781-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
