Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA1	19	hgsc.bcm.edu	37	9	107589428	107589428	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ACAP2	23527	hgsc.bcm.edu	37	3	195013057	195013057	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AGPAT6	137964	hgsc.bcm.edu	37	8	41476308	41476308	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AMMECR1	9949	hgsc.bcm.edu	37	X	109445697	109445697	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANXA3	306	hgsc.bcm.edu	37	4	79516573	79516573	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C10orf84	63877	hgsc.bcm.edu	37	10	120085698	120085698	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C17orf53	78995	hgsc.bcm.edu	37	17	42225907	42225907	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf173	441476	hgsc.bcm.edu	37	9	140146888	140146888	+	Splice_Site	SNP	G	G	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf84	158401	hgsc.bcm.edu	37	9	114490155	114490155	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC11	220136	hgsc.bcm.edu	37	18	47753857	47753857	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC151	115948	hgsc.bcm.edu	37	19	11533441	11533441	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDC73	79577	hgsc.bcm.edu	37	1	193094288	193094289	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CENPN	55839	hgsc.bcm.edu	37	16	81056260	81056260	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLSTN2	64084	hgsc.bcm.edu	37	3	140282917	140282917	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLSTN3	9746	hgsc.bcm.edu	37	12	7286184	7286184	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DFNA5	1687	hgsc.bcm.edu	37	7	24784219	24784219	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DMXL1	1657	hgsc.bcm.edu	37	5	118506472	118506472	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH3	55567	hgsc.bcm.edu	37	16	21117847	21117847	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH6	1768	hgsc.bcm.edu	37	2	84931422	84931422	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM178A	55719	hgsc.bcm.edu	37	10	102697179	102697179	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAT1	2195	hgsc.bcm.edu	37	4	187549412	187549412	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FMN1	342184	hgsc.bcm.edu	37	15	33358776	33358776	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GATM	2628	hgsc.bcm.edu	37	15	45654318	45654318	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GFI1	2672	hgsc.bcm.edu	37	1	92944149	92944149	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR108	56927	hgsc.bcm.edu	37	19	6736679	6736679	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR182	11318	hgsc.bcm.edu	37	12	57390041	57390041	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSD17B4	3295	hgsc.bcm.edu	37	5	118809663	118809663	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IDH3B	3420	hgsc.bcm.edu	37	20	2641180	2641180	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KDM5C	8242	hgsc.bcm.edu	37	X	53228259	53228259	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC8D	55144	hgsc.bcm.edu	37	1	90400549	90400549	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP7D2	256714	hgsc.bcm.edu	37	X	20060638	20060638	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MRPL16	54948	hgsc.bcm.edu	37	11	59577390	59577390	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCAPH2	29781	hgsc.bcm.edu	37	22	50960440	50960440	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NMBR	4829	hgsc.bcm.edu	37	6	142397016	142397016	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PATE3	100169851	hgsc.bcm.edu	37	11	125660387	125660387	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGB1	56104	hgsc.bcm.edu	37	5	140730079	140730079	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCMTD2	55251	hgsc.bcm.edu	37	20	62891425	62891425	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PER1	5187	hgsc.bcm.edu	37	17	8051110	8051110	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PNLDC1	154197	hgsc.bcm.edu	37	6	160240086	160240086	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPM1E	22843	hgsc.bcm.edu	37	17	57057404	57057404	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRICKLE1	144165	hgsc.bcm.edu	37	12	42854246	42854246	+	Silent	SNP	T	T	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
QRICH2	84074	hgsc.bcm.edu	37	17	74288814	74288814	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RANBP17	64901	hgsc.bcm.edu	37	5	170305135	170305135	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNF141	50862	hgsc.bcm.edu	37	11	10536463	10536463	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SELE	6401	hgsc.bcm.edu	37	1	169695896	169695896	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC2A4	6517	hgsc.bcm.edu	37	17	7186902	7186902	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMURF2	64750	hgsc.bcm.edu	37	17	62574659	62574659	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TARS	6897	hgsc.bcm.edu	37	5	33458717	33458717	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP39	10713	hgsc.bcm.edu	37	2	85866457	85866457	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF573	126231	hgsc.bcm.edu	37	19	38229952	38229952	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF597	146434	hgsc.bcm.edu	37	16	3486668	3486668	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF608	57507	hgsc.bcm.edu	37	5	123984358	123984358	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4803-01	TCGA-BP-4803-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
