Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACP5	54	broad.mit.edu	37	19	11687390	11687390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64579996	64579996	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AIFM1	9131	broad.mit.edu	37	X	129265759	129265759	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61830323	61830323	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
B3GALT2	8707	broad.mit.edu	37	1	193150003	193150003	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91636352	91636352	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45601765	45601765	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf114	85411	broad.mit.edu	37	6	13470345	13470345	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40959677	40959677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNB1	782	broad.mit.edu	37	17	37341384	37341384	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CIZ1	25792	broad.mit.edu	37	9	130938657	130938657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107868987	107868987	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52360871	52360871	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EFNA1	1942	broad.mit.edu	37	1	155104091	155104091	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910199	101910199	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HEATR2	54919	broad.mit.edu	37	7	794385	794385	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HGS	9146	broad.mit.edu	37	17	79667601	79667601	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HPGD	3248	broad.mit.edu	37	4	175443219	175443219	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSF2BP	11077	broad.mit.edu	37	21	45050261	45050261	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555495	155555495	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1522	57648	broad.mit.edu	37	1	33234371	33234371	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114398272	114398272	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101528945	101528945	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48026389	48026389	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11190694	11190694	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204971841	204971841	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	5934998	5934998	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135261060	135261060	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PACSIN1	29993	broad.mit.edu	37	6	34499375	34499375	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209867	140209867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16838611	16838611	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70965011	70965011	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72974723	72974723	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99116876	99116876	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9118229	9118229	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86370342	86370342	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	132965070	132965070	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1272327	1272327	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552389	43552389	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96127874	96127874	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP17L2	377630	broad.mit.edu	37	8	11995803	11995803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27246116	27246116	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4972-01	TCGA-BP-4972-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
