Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACIN1	22985	broad.mit.edu	37	14	23533399	23533399	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105417156	105417156	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALG9	79796	broad.mit.edu	37	11	111724387	111724387	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261470	21261470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108141874	108141874	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193188727	193188727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATXN1	6310	broad.mit.edu	37	6	16326679	16326679	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349081	69349081	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13605133	13605133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C20orf3	57136	broad.mit.edu	37	20	24944491	24944491	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73785384	73785384	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184102984	184102984	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1363473	1363473	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSNK1G3	1456	broad.mit.edu	37	5	122911473	122911473	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77477938	77477938	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77477956	77477956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF5	1983	broad.mit.edu	37	14	103805214	103805214	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607804	84607804	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47033947	47033947	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120586152	120586152	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLS2	27165	broad.mit.edu	37	12	56865561	56865561	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPRC5D	55507	broad.mit.edu	37	12	13093773	13093773	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73729634	73729634	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48309113	48309113	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118661447	118661447	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs35089393	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	GGCTGTGGA	GGCTGTGGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136566891	136566891	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170060531	170060531	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96053648	96053648	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176637818	176637818	+	Silent	SNP	A	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134077067	134077067	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52643348	52643348	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071487	134071487	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81157278	81157278	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63042320	63042320	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61920051	61920051	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178753614	178753614	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116345959	116345959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF219	79596	broad.mit.edu	37	13	79212988	79212988	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCCPDH	51097	broad.mit.edu	37	1	246923346	246923346	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEC14L1	6397	broad.mit.edu	37	17	75209464	75209464	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC24A1	9187	broad.mit.edu	37	15	65945096	65945096	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152080543	152080543	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72039333	72039333	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164393928	164393928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141415691	141415691	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5624933	5624933	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBTD2	92181	broad.mit.edu	37	5	171661293	171661293	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61571006	61571006	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191480	10191481	+	Missense_Mutation	DNP	TG	CC	CC	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XYLT2	64132	broad.mit.edu	37	17	48433278	48433278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70472956	70472956	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF136	7695	broad.mit.edu	37	19	12298092	12298092	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF44	51710	broad.mit.edu	37	19	12383395	12383395	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4988-01	TCGA-BP-4988-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
