Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACOT2	10965	broad.mit.edu	37	14	74036025	74036025	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123005537	123005537	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88207597	88207597	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241808356	241808356	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANO10	55129	broad.mit.edu	37	3	43474215	43474215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24942263	24942263	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160093040	160093040	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112673071	112673071	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf148	122945	broad.mit.edu	37	14	77880341	77880341	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C8orf73	642475	broad.mit.edu	37	8	144654816	144654816	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12595350	12595350	+	Silent	SNP	G	T	T	rs56079552	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CASKIN1	57524	broad.mit.edu	37	16	2233883	2233883	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD4	920	broad.mit.edu	37	12	6923323	6923323	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100964716	100964716	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	67005096	67005096	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53308192	53308192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87588236	87588236	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CS	1431	broad.mit.edu	37	12	56668847	56668847	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX5	1655	broad.mit.edu	37	17	62496043	62496043	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DEFB116	245930	broad.mit.edu	37	20	29891069	29891069	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DULLARD	23399	broad.mit.edu	37	17	7147938	7147938	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DUOXA1	90527	broad.mit.edu	37	15	45412823	45412824	+	Missense_Mutation	DNP	CG	AA	AA	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	CG	CG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ECE1	1889	broad.mit.edu	37	1	21616586	21616586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2B5	8893	broad.mit.edu	37	3	183858287	183858287	+	Missense_Mutation	SNP	G	A	A	rs113994061	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187539468	187539468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110036326	110036326	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FXR2	9513	broad.mit.edu	37	17	7508978	7508978	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GNB1	2782	broad.mit.edu	37	1	1749311	1749311	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR19	2842	broad.mit.edu	37	12	12815272	12815272	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93797666	93797666	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48148238	48148238	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JUB	84962	broad.mit.edu	37	14	23450725	23450726	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LHX1	3975	broad.mit.edu	37	17	35299577	35299577	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRFN3	79414	broad.mit.edu	37	19	36435683	36435683	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LTB4R	1241	broad.mit.edu	37	14	24785098	24785098	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LUZP1	7798	broad.mit.edu	37	1	23418890	23418890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LYPD2	137797	broad.mit.edu	37	8	143832568	143832568	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993825	140993825	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135314179	135314179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60802312	60802312	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70930789	70930789	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47692476	47692476	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28192794	28192794	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9076252	9076252	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72748110	72748110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55450880	55450880	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89075257	89075257	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPPB	4879	broad.mit.edu	37	1	11918438	11918438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OPRD1	4985	broad.mit.edu	37	1	29189406	29189406	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154412549	154412549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9520140	9520140	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PANK2	80025	broad.mit.edu	37	20	3899360	3899360	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52643348	52643348	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071517	134071517	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150310685	150310685	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109365421	109365421	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RDH5	5959	broad.mit.edu	37	12	56115013	56115013	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21059323	21059323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF111	54778	broad.mit.edu	37	15	59323192	59323192	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41813028	41813028	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92731889	92731889	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906543	164906543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMC2	10592	broad.mit.edu	37	9	106877025	106877025	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMOX	54498	broad.mit.edu	37	20	4164251	4164251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93624627	93624627	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYNCRIP	10492	broad.mit.edu	37	6	86324828	86324828	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THAP11	57215	broad.mit.edu	37	16	67877045	67877045	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191573	10191573	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85546974	85546974	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFP112	7771	broad.mit.edu	37	19	44833609	44833609	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56587466	56587466	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF672	79894	broad.mit.edu	37	1	249142695	249142695	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4993-01	TCGA-BP-4993-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
