Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABL1	25	broad.mit.edu	37	9	133760875	133760875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALAS1	211	broad.mit.edu	37	3	52236547	52236547	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANO9	338440	broad.mit.edu	37	11	430378	430378	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41197795	41197795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C20orf151	140893	broad.mit.edu	37	20	60989552	60989563	+	In_Frame_Del	DEL	CTTCGGGGAGAG	-	-	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	CTTCGGGGAGAG	CTTCGGGGAGAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6681963	6681963	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf62	81688	broad.mit.edu	37	6	24714642	24714642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25264775	25264775	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25466970	25466970	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47542435	47542435	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTRC	11330	broad.mit.edu	37	1	15771156	15771156	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95614210	95614210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EID1	23741	broad.mit.edu	37	15	49170496	49170496	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HEXDC	284004	broad.mit.edu	37	17	80400154	80400154	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRF2BP2	359948	broad.mit.edu	37	1	234743247	234743247	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39879328	39879328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186459690	186459690	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP11	84918	broad.mit.edu	37	6	150174138	150174138	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47043759	47043759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63492147	63492147	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110919218	110919218	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OSBP	5007	broad.mit.edu	37	11	59361486	59361486	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PARP12	64761	broad.mit.edu	37	7	139724549	139724549	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PGPEP1	54858	broad.mit.edu	37	19	18466813	18466813	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64416765	64416765	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHF8	23133	broad.mit.edu	37	X	54048718	54048718	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PODXL	5420	broad.mit.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	-	-	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	GGCGAC	GGCGAC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113559039	113559039	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRDM13	59336	broad.mit.edu	37	6	100061916	100061916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
QPCT	25797	broad.mit.edu	37	2	37586819	37586819	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
REM1	28954	broad.mit.edu	37	20	30064360	30064360	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPLP0	6175	broad.mit.edu	37	12	120636946	120636946	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7230362	7230362	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34544539	34544539	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162730485	162730485	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNX17	9784	broad.mit.edu	37	2	27598749	27598749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2817282	2817282	+	Silent	SNP	A	T	T	rs111703345	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46657418	46657418	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179598118	179598118	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188315	10188315	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4998-01	TCGA-BP-4998-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
