Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AASDH	132949	broad.mit.edu	37	4	57204599	57204599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAM15	8751	broad.mit.edu	37	1	155028946	155028946	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24801009	24801009	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86940775	86940775	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62288165	62288165	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129146951	129146951	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73825591	73825591	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf153	88745	broad.mit.edu	37	6	42989414	42989419	+	In_Frame_Del	DEL	GCCGGG	-	-	rs3833662	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	GCCGGG	GCCGGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C7orf29	113763	broad.mit.edu	37	7	150027696	150027696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69351861	69351861	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDCP2	200008	broad.mit.edu	37	1	54605450	54605450	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLN8	2055	broad.mit.edu	37	8	1728474	1728474	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLYBL	171425	broad.mit.edu	37	13	100511253	100511253	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47531392	47531392	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21789334	21789334	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39990048	39990048	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXL19	54620	broad.mit.edu	37	16	30939867	30939867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3208255	3208255	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61779841	61779841	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53227751	53227751	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0913	23053	broad.mit.edu	37	10	75551975	75551975	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225599096	225599096	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYST1	84148	broad.mit.edu	37	16	31141808	31141808	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDFIP2	54602	broad.mit.edu	37	13	80094986	80094986	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152548582	152548582	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553992	140553992	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57498975	57498975	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRSS50	29122	broad.mit.edu	37	3	46753884	46753884	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAMP1	10267	broad.mit.edu	37	2	238820196	238820196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49734822	49734822	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66791809	66791809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155291906	155291906	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAMD11	148398	broad.mit.edu	37	1	878409	878409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64360346	64360346	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118581935	118581935	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TATDN1	83940	broad.mit.edu	37	8	125500921	125500921	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70333253	70333253	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMED2	10959	broad.mit.edu	37	12	124069276	124069276	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179643760	179643760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UGT1A6	54578	broad.mit.edu	37	2	234602164	234602164	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	12009405	12009405	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271484	22271484	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52918813	52918813	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5000-01	TCGA-BP-5000-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
