Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
BEND7	222389	broad.mit.edu	37	10	13523079	13523079	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf66	256957	broad.mit.edu	37	17	34185482	34185482	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C3orf37	56941	broad.mit.edu	37	3	129023468	129023468	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76916144	76916144	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC75	253635	broad.mit.edu	37	2	37319307	37319307	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHAF1B	8208	broad.mit.edu	37	21	37783835	37783835	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137623935	137623935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DEFB108B	245911	broad.mit.edu	37	11	71548458	71548458	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54585151	54585151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51127944	51127944	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62122020	62122020	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FADS2	9415	broad.mit.edu	37	11	61608124	61608124	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM70B	348013	broad.mit.edu	37	13	114469231	114469231	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92085830	92085830	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42006052	42006052	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GNAT1	2779	broad.mit.edu	37	3	50231595	50231595	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149793902	149793902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153130590	153130590	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54746128	54746128	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC59	55379	broad.mit.edu	37	17	48470252	48470252	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MEMO1	51072	broad.mit.edu	37	2	32117195	32117195	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168363200	168363200	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9062883	9062883	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76570739	76570739	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAP1L2	4674	broad.mit.edu	37	X	72434219	72434219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73759584	73759584	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97851579	97851579	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140236546	140236546	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R1B	84152	broad.mit.edu	37	17	37785438	37785438	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1586888	1586888	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF148	378925	broad.mit.edu	37	7	122342196	122342196	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEPX1	51734	broad.mit.edu	37	16	1990864	1990864	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310791	61310791	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFMBT1	51460	broad.mit.edu	37	3	52940142	52940142	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63030474	63030474	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1955173	1955173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218713105	218713105	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC30A	92104	broad.mit.edu	37	2	178482340	178482340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UNC119B	84747	broad.mit.edu	37	12	121154504	121154504	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP42	84132	broad.mit.edu	37	7	6190120	6190120	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75852292	75852292	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22836216	22836216	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5004-01	TCGA-BP-5004-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
