Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSS1	84532	broad.mit.edu	37	20	25011448	25011448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD6	22881	broad.mit.edu	37	6	90338835	90338835	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50187702	50187702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BRD9	65980	broad.mit.edu	37	5	864640	864640	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2orf49	79074	broad.mit.edu	37	2	105959481	105959481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41159192	41159192	+	Missense_Mutation	SNP	C	A	A	rs76528010	byFrequency;by1000genomes	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41159278	41159278	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64880873	64880873	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21783501	21783501	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11217730	11217730	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86453338	86453338	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DEDD	9191	broad.mit.edu	37	1	161093979	161093979	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57876745	57876745	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXO40	51725	broad.mit.edu	37	3	121340772	121340772	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPATCH4	54865	broad.mit.edu	37	1	156565621	156565621	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR17	2840	broad.mit.edu	37	2	128407597	128407597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR78	27201	broad.mit.edu	37	4	8584302	8584302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48148756	48148756	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8953448	8953448	+	Silent	SNP	A	C	C	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135012532	135012532	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45925587	45925587	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MED15	51586	broad.mit.edu	37	22	20920819	20920819	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPS18A	55168	broad.mit.edu	37	6	43642986	43642986	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60561455	60561455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11217299	11217299	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1078457	1078457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23894068	23894068	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33575921	33575921	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115858556	115858556	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NKD1	85407	broad.mit.edu	37	16	50583388	50583388	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR5AU1	390445	broad.mit.edu	37	14	21623848	21623848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR6C3	254786	broad.mit.edu	37	12	55725604	55725604	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OXSR1	9943	broad.mit.edu	37	3	38287677	38287677	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65402821	65402821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCP4L1	654790	broad.mit.edu	37	1	161254256	161254256	+	Frame_Shift_Del	DEL	G	-	-	rs116246087	by1000genomes	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149240511	149240511	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32088233	32088233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32088238	32088238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32090571	32090571	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50724518	50724518	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTGER2	5732	broad.mit.edu	37	14	52782081	52782081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92982925	92982925	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57099909	57099909	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYNRG	11276	broad.mit.edu	37	17	35946642	35946642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYT15	83849	broad.mit.edu	37	10	46968694	46968694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM171	134285	broad.mit.edu	37	5	72419335	72419335	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32065169	32065169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68514833	68514833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19455528	19455528	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183752	10183752	+	Missense_Mutation	SNP	T	A	A	rs5030803	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32417899	32417899	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53656986	53656986	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF705A	440077	broad.mit.edu	37	12	8325234	8325234	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802977	185802977	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5175-01	TCGA-BP-5175-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
