Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACADS	35	broad.mit.edu	37	12	121175723	121175723	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	42368569	42368569	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARL6IP6	151188	broad.mit.edu	37	2	153591609	153591609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf67	28971	broad.mit.edu	37	11	77553573	77553573	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C16orf78	123970	broad.mit.edu	37	16	49407969	49407969	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C8orf79	57604	broad.mit.edu	37	8	12879153	12879153	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62498425	62498425	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC102A	92922	broad.mit.edu	37	16	57559847	57559847	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26584685	26584685	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35198275	35198275	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHPT1	56994	broad.mit.edu	37	12	102117531	102117531	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100169931	100169931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTBS	1486	broad.mit.edu	37	1	85040025	85040033	+	In_Frame_Del	DEL	AGCAGCGCT	-	-	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	AGCAGCGCT	AGCAGCGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX21	9188	broad.mit.edu	37	10	70742529	70742529	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHRS7B	25979	broad.mit.edu	37	17	21087063	21087063	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51077010	51077010	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53925249	53925249	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25470606	25470606	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXO39	162517	broad.mit.edu	37	17	6690673	6690673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151166239	151166239	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245021386	245021386	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3601149	3601149	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94044309	94044309	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF18B	146909	broad.mit.edu	37	17	43003485	43003485	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33635704	33635705	+	Missense_Mutation	DNP	GT	AA	AA	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LMBR1L	55716	broad.mit.edu	37	12	49495053	49495053	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRG1	116844	broad.mit.edu	37	19	4538076	4538079	+	Frame_Shift_Del	DEL	AGGT	-	-	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	AGGT	AGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12248593	12248593	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLLT1	4298	broad.mit.edu	37	19	6216490	6216490	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125603469	125603469	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1159013	1159013	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYST3	7994	broad.mit.edu	37	8	41790405	41790405	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAGPA	51172	broad.mit.edu	37	16	5081819	5081819	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132432049	132432049	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBLD	64081	broad.mit.edu	37	10	70045112	70045112	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52712614	52712614	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47776974	47776974	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85733457	85733457	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PION	54103	broad.mit.edu	37	7	76950057	76950057	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	23003251	23003251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POU5F1	5460	broad.mit.edu	37	6	31138063	31138063	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43281766	43281766	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKAG1	5571	broad.mit.edu	37	12	49397588	49397588	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71139699	71139699	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAB8A	4218	broad.mit.edu	37	19	16240402	16240402	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAB8A	4218	broad.mit.edu	37	19	16240404	16240404	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21936673	21936673	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21936688	21936688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167085470	167085470	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151105972	151105972	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50453230	50453230	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38633283	38633283	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86900351	86900351	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18916793	18916793	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18880596	18880596	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SREBF2	6721	broad.mit.edu	37	22	42294664	42294664	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42605832	42605832	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2111908	2111908	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBQLN1	29979	broad.mit.edu	37	9	86292725	86292725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183805	10183809	+	Frame_Shift_Del	DEL	GACGG	-	-	rs5030808	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	GACGG	GACGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VKORC1	79001	broad.mit.edu	37	16	31104693	31104693	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101378747	101378747	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZHX2	22882	broad.mit.edu	37	8	123965269	123965269	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5181-01	TCGA-BP-5181-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
