Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACO1	48	broad.mit.edu	37	9	32434667	32434667	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43862444	43862444	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21903878	21903878	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11348441	11348441	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76741471	76741471	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BSND	7809	broad.mit.edu	37	1	55474113	55474113	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf97	400566	broad.mit.edu	37	17	263666	263666	+	Silent	SNP	C	A	A	rs111388956	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184629723	184629723	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26487295	26487295	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCNJ	54619	broad.mit.edu	37	10	97816869	97816869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60499490	60499490	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP76	79959	broad.mit.edu	37	18	12701062	12701062	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLCC1	23155	broad.mit.edu	37	1	109477333	109477333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COX11	1353	broad.mit.edu	37	17	53040153	53040153	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68139003	68139003	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57573353	57573353	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DENND4B	9909	broad.mit.edu	37	1	153916542	153916542	+	Silent	SNP	A	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116752301	116752301	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13659663	13659663	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171173043	171173043	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GAA	2548	broad.mit.edu	37	17	78090863	78090863	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887644	25887644	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13716451	13716451	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34100855	34100855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48674573	48674573	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HLA-E	3133	broad.mit.edu	37	6	30457321	30457321	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156498730	156498730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0427	9811	broad.mit.edu	37	18	46287836	46287836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105537004	105537004	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51582708	51582708	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95825502	95825502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAPK6	5597	broad.mit.edu	37	15	52356958	52356958	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARK4	57787	broad.mit.edu	37	19	45800968	45800968	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCM7	4176	broad.mit.edu	37	7	99697218	99697218	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MPP5	64398	broad.mit.edu	37	14	67779288	67779288	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55497591	55497591	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52643768	52643768	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75611556	75611556	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POU4F1	5457	broad.mit.edu	37	13	79176484	79176486	+	In_Frame_Del	DEL	TGG	-	-	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	TGG	TGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPIC	5480	broad.mit.edu	37	5	122359616	122359616	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4953981	4953981	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20486044	20486044	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20486049	20486049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RENBP	5973	broad.mit.edu	37	X	153209149	153209149	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198508984	198508984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
S1PR3	1903	broad.mit.edu	37	9	91616543	91616543	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234237149	234237149	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAMD14	201191	broad.mit.edu	37	17	48191587	48191587	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SGSM1	129049	broad.mit.edu	37	22	25251635	25251635	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIL1	64374	broad.mit.edu	37	5	138378410	138378410	+	Splice_Site	SNP	T	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162815017	162815017	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905975	144905975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLU7	10569	broad.mit.edu	37	5	159835383	159835383	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMS	6611	broad.mit.edu	37	X	22010764	22010764	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49057150	49057150	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPIN2A	54466	broad.mit.edu	37	X	57162317	57162317	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SSTR3	6753	broad.mit.edu	37	22	37603580	37603580	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUCLG1	8802	broad.mit.edu	37	2	84652566	84652566	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEX10	54881	broad.mit.edu	37	9	103109629	103109629	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2381082	2381082	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43571338	43571338	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THBS1	7057	broad.mit.edu	37	15	39885311	39885311	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMOD2	29767	broad.mit.edu	37	15	52065996	52065996	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMOD2	29767	broad.mit.edu	37	15	52066002	52066002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47221561	47221561	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176295140	176295140	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100361679	100361679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271280	22271280	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5187-01	TCGA-BP-5187-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
