Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGPAT5	55326	broad.mit.edu	37	8	6614716	6614716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46245701	46245701	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCL6	604	broad.mit.edu	37	3	187446848	187446848	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31122472	31122472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD6	923	broad.mit.edu	37	11	60785461	60785461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74474063	74474063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211476961	211476961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80136882	80136882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	430563	430563	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56373344	56373344	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELAC2	60528	broad.mit.edu	37	17	12920219	12920219	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89163289	89163289	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FUT11	170384	broad.mit.edu	37	10	75533416	75533416	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GAS6	2621	broad.mit.edu	37	13	114549554	114549554	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153236256	153236256	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201845133	201845133	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53228204	53228204	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39190779	39190779	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	118020150	118020150	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182871600	182871600	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LSM11	134353	broad.mit.edu	37	5	157170976	157170976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAGEE2	139599	broad.mit.edu	37	X	75004670	75004670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MINK1	50488	broad.mit.edu	37	17	4794820	4794820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36219945	36219945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168297599	168297599	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPS21	54460	broad.mit.edu	37	1	150266811	150266811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009312	9009313	+	Missense_Mutation	DNP	GA	AT	AT	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541011	133541011	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369272	22369272	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52651299	52651299	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140174870	140174870	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PEPD	5184	broad.mit.edu	37	19	33902626	33902626	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2G12A	81579	broad.mit.edu	37	4	110650931	110650931	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38154095	38154095	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPL31	6160	broad.mit.edu	37	2	101622534	101622534	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCD5	79966	broad.mit.edu	37	4	83719638	83719638	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCRN3	79634	broad.mit.edu	37	2	175289230	175289230	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFRP1	6422	broad.mit.edu	37	8	41166638	41166640	+	In_Frame_Del	DEL	GCT	-	-	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	GCT	GCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36231433	36231433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122853762	122853762	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183715	10183716	+	Frame_Shift_Del	DEL	GT	-	-	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12566928	12566928	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38803128	38803128	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5190-01	TCGA-BP-5190-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
