Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AIM1L	55057	broad.mit.edu	37	1	26664087	26664087	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3907733	3907733	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
B3GAT1	27087	broad.mit.edu	37	11	134253723	134253723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf81	79949	broad.mit.edu	37	10	115534737	115534737	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40114940	40114940	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92054360	92054360	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151496775	151496775	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLK1	1195	broad.mit.edu	37	2	201721535	201721535	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11738174	11738174	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOK4	55715	broad.mit.edu	37	16	57509863	57509863	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744209	25744209	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127609608	127609608	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94316836	94316836	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HEY1	23462	broad.mit.edu	37	8	80678002	80678002	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRF7	3665	broad.mit.edu	37	11	614301	614301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41706394	41706394	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85438507	85438507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCART6	401612	broad.mit.edu	37	X	103349894	103349894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129913557	129913557	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MMS19	64210	broad.mit.edu	37	10	99223688	99223688	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192214900	192214900	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624774	53624774	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339950	55339950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32052785	32052785	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79708068	79708068	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PI4K2A	55361	broad.mit.edu	37	10	99400914	99400914	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12919829	12919829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62642793	62642793	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTCD3	55037	broad.mit.edu	37	2	86361451	86361451	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130897689	130897689	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21056977	21056977	+	Missense_Mutation	SNP	G	A	A	rs111330062	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	76994175	76994175	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72617449	72617449	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235951396	235951396	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC4A1AP	22950	broad.mit.edu	37	2	27892203	27892203	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYT2	127833	broad.mit.edu	37	1	202566077	202566077	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85409119	85409119	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75968691	75968691	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108572578	108572578	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19737956	19737956	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188309	10188309	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WRNIP1	56897	broad.mit.edu	37	6	2784577	2784577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157442	145157442	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77776069	77776069	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF155	7711	broad.mit.edu	37	19	44501334	44501334	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28206650	28206650	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF814	730051	broad.mit.edu	37	19	58385927	58385927	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-BP-5196-01	TCGA-BP-5196-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
