Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA10	10349	broad.mit.edu	37	17	67189255	67189255	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33683193	33683193	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105414503	105414503	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104187208	104187208	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AMN	81693	broad.mit.edu	37	14	103395248	103395248	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf104	55172	broad.mit.edu	37	14	50100543	50100543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMTA2	23125	broad.mit.edu	37	17	4876239	4876239	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214813680	214813680	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118578782	118578782	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11572453	11572453	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2B1	1967	broad.mit.edu	37	12	124107227	124107227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXW10	10517	broad.mit.edu	37	17	18682177	18682177	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40398046	40398046	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FNIP2	57600	broad.mit.edu	37	4	159754698	159754698	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HADHA	3030	broad.mit.edu	37	2	26435464	26435464	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LYPD4	147719	broad.mit.edu	37	19	42341277	42341277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	96074938	96074938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP4K3	8491	broad.mit.edu	37	2	39564108	39564108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100390871	100390871	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MEGF6	1953	broad.mit.edu	37	1	3519075	3519075	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092585	101092585	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131245102	131245102	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247614532	247614532	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22133740	22133740	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52643743	52643743	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66619326	66619326	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PMF1	11243	broad.mit.edu	37	1	156206204	156206204	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118305651	118305651	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R9B	84687	broad.mit.edu	37	17	48212737	48212737	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84610143	84610143	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RGL2	5863	broad.mit.edu	37	6	33259932	33259932	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RQCD1	9125	broad.mit.edu	37	2	219457120	219457120	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SDHA	6389	broad.mit.edu	37	5	251704	251704	+	Frame_Shift_Del	DEL	G	-	-	rs34747801	byFrequency;by1000genomes	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48054430	48054430	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77932908	77932908	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228564091	228564091	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17750824	17750824	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMCO6	55374	broad.mit.edu	37	5	140024201	140024201	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20024477	20024477	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VEZF1	7716	broad.mit.edu	37	17	56060482	56060482	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68371743	68371743	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60242521	60242522	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFYVE16	9765	broad.mit.edu	37	5	79769670	79769670	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5200-01	TCGA-BP-5200-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
