Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM33	80332	broad.mit.edu	37	20	3653456	3653456	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105407539	105407539	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73680768	73680768	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARCN1	372	broad.mit.edu	37	11	118454666	118454666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96035969	96035969	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112998188	112998188	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C20orf135	140701	broad.mit.edu	37	20	62493290	62493290	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf162	57150	broad.mit.edu	37	6	88046871	88046871	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDT1	81620	broad.mit.edu	37	16	88872184	88872184	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102493805	102493805	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33734957	33734957	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155732098	155732098	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14804348	14804348	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HCFC2	29915	broad.mit.edu	37	12	104476292	104476293	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94239093	94239093	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35153771	35153771	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44928976	44928976	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT31	3881	broad.mit.edu	37	17	39553695	39553695	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6980564	6980564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96315099	96315099	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LONP1	9361	broad.mit.edu	37	19	5699087	5699087	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC37A2	474170	broad.mit.edu	37	17	44625842	44625842	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTF1	4520	broad.mit.edu	37	1	38323150	38323150	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55489500	55489500	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTMR1	8776	broad.mit.edu	37	X	149887167	149887167	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDUFA13	51079	broad.mit.edu	37	19	19637065	19637065	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOL6	65083	broad.mit.edu	37	9	33467191	33467191	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402861	248402861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52597340	52597340	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27251182	27251182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133850030	133850030	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10396087	10396087	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17700112	17700112	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37150191	37150191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101014479	101014479	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RSPH10B2	728194	broad.mit.edu	37	7	6006558	6006558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92763473	92763473	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SDR16C5	195814	broad.mit.edu	37	8	57228684	57228684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC44A3	126969	broad.mit.edu	37	1	95310848	95310848	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51415372	51415372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCTEX1D2	255758	broad.mit.edu	37	3	196022891	196022891	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMPO	7112	broad.mit.edu	37	12	98927778	98927778	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5364768	5364768	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166731299	166731299	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TUBB2C	10383	broad.mit.edu	37	9	140137408	140137408	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TXNIP	10628	broad.mit.edu	37	1	145438912	145438912	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VAT1	10493	broad.mit.edu	37	17	41169909	41169909	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188245	10188245	+	Missense_Mutation	SNP	G	C	C	rs104893830	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZSCAN10	84891	broad.mit.edu	37	16	3139570	3139570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5201-01	TCGA-BP-5201-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
