Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACACA	31	broad.mit.edu	37	17	35600351	35600351	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7246741	7246741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2938986	2938986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976970	119976970	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51696509	51696509	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BTG2	7832	broad.mit.edu	37	1	203276485	203276485	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf23	152992	broad.mit.edu	37	4	8469669	8469669	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAND1	55832	broad.mit.edu	37	12	67698394	67698394	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26517881	26517881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66359599	66359599	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120173115	120173115	+	Missense_Mutation	SNP	G	T	T	rs79892909	byFrequency;by1000genomes	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130283940	130283940	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68107615	68107615	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51520122	51520122	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJC30	84277	broad.mit.edu	37	7	73097664	73097664	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXO2	26232	broad.mit.edu	37	1	11709907	11709907	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123353298	123353298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FOXRED2	80020	broad.mit.edu	37	22	36900193	36900193	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79296891	79296891	+	Splice_Site	SNP	A	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46043264	46043264	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDAC10	83933	broad.mit.edu	37	22	50685358	50685358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152185823	152185823	+	Missense_Mutation	SNP	C	A	A	rs41266120	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99482525	99482525	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53253992	53253992	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRI1	65095	broad.mit.edu	37	19	10668296	10668296	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107564469	107564469	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARS	4141	broad.mit.edu	37	12	57908819	57908819	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9069219	9069219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106848559	106848561	+	In_Frame_Del	DEL	GTT	-	-	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	GTT	GTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203465247	203465247	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR13C5	138799	broad.mit.edu	37	9	107361334	107361334	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65208079	65208079	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1559690	1559690	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RCOR3	55758	broad.mit.edu	37	1	211486237	211486237	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12893426	12893426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470413	10470413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCGB2A1	4246	broad.mit.edu	37	11	61981221	61981221	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPZ1	84654	broad.mit.edu	37	5	79616434	79616434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPZ1	84654	broad.mit.edu	37	5	79616440	79616440	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRL	6345	broad.mit.edu	37	16	4245640	4245640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYTL3	94120	broad.mit.edu	37	6	159146585	159146585	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM110	375346	broad.mit.edu	37	3	52883890	52883890	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5352636	5352644	+	In_Frame_Del	DEL	GAGGAGGAG	-	-	rs112387517	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	GAGGAGGAG	GAGGAGGAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54954164	54954164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP16	10600	broad.mit.edu	37	21	30415852	30415852	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF276	92822	broad.mit.edu	37	16	89793740	89793740	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5202-01	TCGA-BP-5202-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
