Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MIB2	142678	genome.wustl.edu	37	1	1563440	1563440	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514234	+1	known	p.G448R	0.003	30	0%	23	39.1%	55	29%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CDK11B	984	genome.wustl.edu	37	1	1573156	1573156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033487.1	-1	reviewed	p.K222E	1.000	260	0%	258	26.7%	65	32.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CASZ1	54897	genome.wustl.edu	37	1	10710785	10710785	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.P948	0.983	133	0%	131	31.3%	11	27.2%	-	-	-	NULL
EPHA10	284656	genome.wustl.edu	37	1	38227313	38227313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099439.1	-1	validated	p.R205H	1.000	17	0%	16	50%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Galactose-binding domain-like
SZT2	23334	genome.wustl.edu	37	1	43891161	43891161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.D46N	1.000	122	0%	109	34.9%	4	25%	possibly_damaging(0.921)	deleterious(0.03)	deleterious(0.736)	NULL
MIR761	100313892	genome.wustl.edu	37	1	52302014	52302014	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390787	-1	known	NULL	1.000	58	0%	48	31.2%	0	-	-	-	-	-
ROR1	4919	genome.wustl.edu	37	1	64515550	64515550	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005012.2	+1	validated	p.R117	0.820	95	0%	89	36%	1	100%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ST6GALNAC5	81849	genome.wustl.edu	37	1	77509991	77509991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030965.1	+1	provisional	p.R122C	1.000	34	0%	26	38.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Glyco_transf_29
GIPC2	54810	genome.wustl.edu	37	1	78546359	78546359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017655.4	+1	validated	p.I81L	1.000	193	0%	168	30.4%	1	100%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
MCOLN2	255231	genome.wustl.edu	37	1	85397106	85397106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153259.2	-1	reviewed	p.F494Y	0.999	71	0%	77	28.6%	2	0%	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	HMMPfam_Ion_trans
RTCD1	8634	genome.wustl.edu	37	1	100742858	100742858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130841.1	+1	validated	p.S275L	0.941	251	0%	208	24.5%	65	46.1%	benign(0.045)	deleterious(0.01)	neutral(0.408)	HMMPfam_RTC,superfamily_RNA 3'-terminal phosphate cyclase RPTC insert domain,HMMPfam_RTC_insert
FLG	2312	genome.wustl.edu	37	1	152275813	152275813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.S3850L	0.000	284	0%	448	55.8%	0	-	unknown(0)	tolerated(0.08)	-	HMMPfam_Filaggrin
RAB13	5872	genome.wustl.edu	37	1	153955755	153955755	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002870.2	-1	provisional	p.Y88*	0.996	146	0%	230	16.1%	190	2.6%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
HCN3	57657	genome.wustl.edu	37	1	155254501	155254501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020897.1	+1	validated	p.A348T	1.000	28	0%	59	16.9%	7	14.2%	benign(0.004)	tolerated(0.5)	neutral(0.010)	superfamily_SSF81324
KIFAP3	22920	genome.wustl.edu	37	1	170001112	170001112	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014970.2	-1	reviewed	p.P252	1.000	246	0%	295	54.6%	15	80%	-	-	-	HMMPfam_KAP,superfamily_ARM repeat
ZBTB37	84614	genome.wustl.edu	37	1	173854843	173854843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122770.1	+1	provisional	p.R365W	1.000	105	0%	148	16.2%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176564093	176564093	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.A451	0.000	91	0%	142	16.2%	0	-	-	-	-	NULL
RASAL2	9462	genome.wustl.edu	37	1	178425889	178425889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170692.2	+1	reviewed	p.V738F	1.000	136	0%	190	17.4%	4	0%	benign(0.004)	deleterious(0)	neutral(0.445)	HMMSmart_RasGAP
C1orf106	55765	genome.wustl.edu	37	1	200869348	200869348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018265.2	+1	validated	p.E184D	0.995	44	0%	54	22.2%	2	0%	possibly_damaging(0.794)	tolerated(0.15)	deleterious(0.539)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200965446	200965446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.R719W	1.000	165	0%	231	13.4%	2	0%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	superfamily_WD40_like
NFASC	23114	genome.wustl.edu	37	1	204943405	204943405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.P471T	1.000	68	0%	94	19.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TLR5	7100	genome.wustl.edu	37	1	223285632	223285632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003268.5	-1	reviewed	p.N248D	0.002	97	0%	164	11.6%	25	28%	benign(0.003)	tolerated(0.27)	neutral(0.034)	superfamily_SSF52058
TRIM11	81559	genome.wustl.edu	37	1	228582438	228582438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145214.2	-1	reviewed	p.G459C	0.636	43	0%	53	17%	74	18.9%	probably_damaging(0.993)	deleterious(0.05)	deleterious(0.795)	NULL
RYR2	6262	genome.wustl.edu	37	1	237656338	237656338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.P638T	1.000	144	0%	187	54%	0	-	possibly_damaging(0.515)	-	-	HMMPfam_RYDR_ITPR
RYR2	6262	genome.wustl.edu	37	1	237656339	237656339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.P638Q	1.000	141	0.7%	187	55.1%	0	-	probably_damaging(0.965)	-	-	HMMPfam_RYDR_ITPR
KLF11	8462	genome.wustl.edu	37	2	10187921	10187921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003597.4	+1	reviewed	p.A153T	0.000	86	0%	93	32.3%	3	66.6%	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
GREB1	9687	genome.wustl.edu	37	2	11780447	11780447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014668.3	+1	reviewed	p.R1906Q	1.000	61	0%	47	23.4%	149	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PUM2	23369	genome.wustl.edu	37	2	20463061	20463061	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015317.1	-1	provisional	p.G706	1.000	92	0%	102	28.4%	20	45%	-	-	-	superfamily_ARM repeat
IGKV1D-12	28903	genome.wustl.edu	37	2	90199113	90199113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390276	+1	known	p.D92N	1.000	315	0%	274	29.2%	32	0%	benign(0.008)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
UXS1	80146	genome.wustl.edu	37	2	106729123	106729123	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025076.3	-1	validated	p.A281	0.169	30	0%	41	31.7%	76	32.8%	-	-	-	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
NCKAP5	344148	genome.wustl.edu	37	2	133540398	133540398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.A1329V	0.000	77	0%	86	24.4%	1	0%	benign(0)	tolerated(1)	-	NULL
LRP1B	53353	genome.wustl.edu	37	2	140992400	140992400	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.P4538	1.000	194	0%	178	32%	0	-	-	-	-	NULL
NFE2L2	4780	genome.wustl.edu	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006164.3	-1	validated	p.E82D	1.000	248	0%	280	30.7%	61	37.7%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
TTN	7273	genome.wustl.edu	37	2	179410569	179410569	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.Q29230R	0.194	154	0%	134	23.9%	0	-	-	-	-	NULL
ITGA4	3676	genome.wustl.edu	37	2	182360660	182360660	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000885.4	+1	reviewed	p.Y512	0.991	148	0%	132	35.6%	1	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ATG7	10533	genome.wustl.edu	37	3	11421449	11421449	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446110	+1	known	p.P27Q	1.000	266	0%	267	29.2%	15	0%	-	-	-	NULL
SH3BP5	9467	genome.wustl.edu	37	3	15345703	15345703	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004844.3	-1	validated	p.E79D	1.000	129	0%	137	24.8%	14	21.4%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_SH3BP5
SATB1	6304	genome.wustl.edu	37	3	18462366	18462366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131010.1	-1	validated	p.R32C	1.000	139	0%	142	32.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC6A20	54716	genome.wustl.edu	37	3	45812893	45812895	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020208.3	-1	reviewed	p.F250in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SNF
BAP1	8314	genome.wustl.edu	37	3	52438493	52438493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004656.2	-1	reviewed	p.V409A	0.977	137	0%	138	29%	35	20%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
TMPRSS7	344805	genome.wustl.edu	37	3	111799851	111799851	+	Nonsense_Mutation	SNP	C	C	T	rs147783135	by1000genomes	TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042575.2	+1	validated	p.R692*	1.000	326	0%	310	29.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
NCBP2	22916	genome.wustl.edu	37	3	196669358	196669358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007362.3	-1	reviewed	p.L6Q	1.000	14	0%	20	35%	14	21.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_RNA-binding domain RBD
DRD5	1816	genome.wustl.edu	37	4	9784001	9784001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000798.4	+1	reviewed	p.W116C	1.000	53	0%	66	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SEPSECS	51091	genome.wustl.edu	37	4	25157685	25157685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016955.3	-1	validated	p.S95F	1.000	241	0%	235	28.1%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases
CWH43	80157	genome.wustl.edu	37	4	49040060	49040060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025087.2	+1	validated	p.L556I	0.999	48	0%	52	26.9%	14	35.7%	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	NULL
HERC6	55008	genome.wustl.edu	37	4	89357034	89357034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.R803Q	0.000	122	0%	136	27.2%	5	20%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MAML3	55534	genome.wustl.edu	37	4	140640759	140640759	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018717.4	-1	validated	p.P1040	0.531	51	0%	39	33.3%	18	33.3%	-	-	-	NULL
LRBA	987	genome.wustl.edu	37	4	151829489	151829489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.I497T	1.000	153	0%	134	28.4%	3	33.3%	benign(0.248)	deleterious(0.01)	neutral(0.431)	superfamily_ARM repeat
RXFP1	59350	genome.wustl.edu	37	4	159568024	159568024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021634.2	+1	provisional	p.A476V	1.000	178	0.6%	190	23.7%	102	36.2%	benign(0.027)	tolerated(0.19)	neutral(0.051)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANXA10	11199	genome.wustl.edu	37	4	169108563	169108563	+	Missense_Mutation	SNP	C	C	T	rs181214351	by1000genomes	TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007193.3	+1	reviewed	p.A318V	1.000	176	0%	197	31.5%	0	-	possibly_damaging(0.621)	deleterious(0)	deleterious(0.661)	superfamily_Annexin
SLC9A3	6550	genome.wustl.edu	37	5	475114	475114	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004174.2	-1	validated	p.P795	0.002	13	0%	11	36.4%	1	0%	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13824359	13824359	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.T2176	0.087	104	0%	97	22.7%	2	100%	-	-	-	superfamily_SSF52540
PRDM9	56979	genome.wustl.edu	37	5	23524522	23524522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.C344R	1.000	188	0%	194	27.3%	0	-	possibly_damaging(0.449)	deleterious(0.01)	deleterious(0.552)	HMMSmart_SET,superfamily_SSF82199
MAP1B	4131	genome.wustl.edu	37	5	71492953	71492953	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.P1257	0.028	68	0%	73	37%	3	0%	-	-	-	NULL
FBN2	2201	genome.wustl.edu	37	5	127599171	127599171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.T2713M	0.995	66	0%	64	29.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
C5orf24	134553	genome.wustl.edu	37	5	134190864	134190864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135586.1	+1	validated	p.R92W	1.000	78	0%	78	20.5%	16	18.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCDHA11	56138	genome.wustl.edu	37	5	140250260	140250260	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.H524	0.995	43	0%	49	46.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TAP1	6890	genome.wustl.edu	37	6	32816545	32816545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000593.5	-1	reviewed	p.R544C	1.000	232	0%	199	22.1%	92	10.8%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_ABC_TM_1
KHDRBS2	202559	genome.wustl.edu	37	6	62604684	62604684	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152688.2	-1	validated	p.T222	0.964	57	0%	47	31.9%	0	-	-	-	-	NULL
MMS22L	253714	genome.wustl.edu	37	6	97616054	97616054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.R968W	1.000	246	0%	201	32.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SIM1	6492	genome.wustl.edu	37	6	100838699	100838699	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.P613	0.973	112	0%	117	31.6%	0	-	-	-	-	HMMPfam_SIM_C
SMPD2	6610	genome.wustl.edu	37	6	109763791	109763791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003080.2	+1	validated	p.R152C	1.000	132	0%	130	27.7%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
GPRC6A	222545	genome.wustl.edu	37	6	117128090	117128090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148963.2	-1	validated	p.R260W	0.988	199	0%	138	21.7%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
VNN1	8876	genome.wustl.edu	37	6	133005586	133005586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004666.2	-1	reviewed	p.E416G	0.994	119	0%	91	36.3%	14	50%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
DACT2	168002	genome.wustl.edu	37	6	168709168	168709168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_214462.3	-1	validated	p.E423D	0.000	67	0%	68	10.3%	10	0%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
AEBP1	165	genome.wustl.edu	37	7	44152446	44152446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129.3	+1	reviewed	p.A836V	0.789	52	0%	40	22.5%	145	0%	benign(0.361)	tolerated(0.07)	neutral(0.433)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
HGF	3082	genome.wustl.edu	37	7	81392110	81392110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000601.4	-1	reviewed	p.A56V	1.000	494	0%	435	24.1%	0	-	benign(0.006)	tolerated(0.18)	neutral(0.056)	HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Hairpin loop containing domain-like
ANKIB1	54467	genome.wustl.edu	37	7	92027712	92027712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.R907W	0.938	133	0%	122	27%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PEG10	23089	genome.wustl.edu	37	7	94293673	94293673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040152.1	+1	reviewed	p.D269N	0.063	15	0%	16	56.2%	15	6.6%	probably_damaging(0.959)	tolerated(0.37)	neutral(0.422)	NULL
SLC25A13	10165	genome.wustl.edu	37	7	95751149	95751174	+	Frame_Shift_Del	DEL	AGTTAAGAACACATTATTTCCATACC	AGTTAAGAACACATTATTTCCATACC	-	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	AGTTAAGAACACATTATTTCCATACC	AGTTAAGAACACATTATTTCCATACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014251.2	-1	reviewed	p.A584fs	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TRRAP	8295	genome.wustl.edu	37	7	98507757	98507757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.L477V	1.000	36	0%	54	31.5%	2	50%	unknown(0)	tolerated(0.36)	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100635201	100635201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.P596S	0.006	560	0%	557	16.2%	0	-	unknown(0)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100635644	100635644	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.G743	0.001	822	0.1%	779	14.6%	0	-	-	-	-	NULL
ZNF277	11179	genome.wustl.edu	37	7	111846853	111846853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021994.2	+1	validated	p.G28C	0.000	60	0%	50	36%	10	10%	benign(0.406)	deleterious(0.04)	deleterious(0.479)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120655806	120655806	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024913.4	+1	validated	p.Q113*	0.000	51	0%	53	30.2%	3	0%	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	132174138	132174138	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.D428	1.000	78	0%	76	21.1%	6	66.6%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MGAM	8972	genome.wustl.edu	37	7	141764254	141764254	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.D1472	0.985	51	0%	66	30.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
TRBV4-1	28617	genome.wustl.edu	37	7	142013480	142013480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390357	+1	known	p.S112N	1.000	84	0%	61	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV9	28586	genome.wustl.edu	37	7	142239764	142239764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390363	-1	known	p.T39M	0.000	112	0%	141	31.2%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_V-set,superfamily_SSF48726
SSPO	23145	genome.wustl.edu	37	7	149505351	149505351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.C2970Y	0.946	45	0%	39	23.1%	0	-	-	-	-	HMMSmart_SM00215
SLC4A2	6522	genome.wustl.edu	37	7	150767428	150767428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.R482*	0.752	33	0%	38	13.2%	30	0%	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
NOM1	64434	genome.wustl.edu	37	7	156743391	156743391	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138400.1	+1	provisional	p.S320	0.000	100	0%	98	29.6%	9	33.3%	-	-	-	NULL
PSD3	23362	genome.wustl.edu	37	8	18729300	18729300	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.E358	0.000	201	0%	173	29.5%	1	0%	-	-	-	NULL
DOCK5	80005	genome.wustl.edu	37	8	25166362	25166362	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444569	+1	known	p.R143C	0.599	53	0%	73	23.3%	0	-	-	-	-	NULL
PTK2B	2185	genome.wustl.edu	37	8	27295365	27295365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004103.3	+1	reviewed	p.M537I	1.000	58	0%	55	25.5%	12	25%	benign(0.051)	deleterious(0)	neutral(0.448)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
DDHD2	23259	genome.wustl.edu	37	8	38095631	38095631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015214.2	+1	validated	p.A176T	0.232	333	0%	337	31.5%	9	0%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
MCM4	4173	genome.wustl.edu	37	8	48878899	48878899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005914.2	+1	reviewed	p.G329R	0.018	23	0%	22	27.3%	25	44%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMSmart_MCM,superfamily_Nucleic_acid_OB
CA8	767	genome.wustl.edu	37	8	61135237	61135237	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004056.4	-1	reviewed	p.R237*	1.000	78	0%	93	34.4%	22	18.1%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
RECQL4	9401	genome.wustl.edu	37	8	145741985	145741985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428558	-1	known	p.Q173R	0.940	34	0%	23	30.4%	3	100%	-	-	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73151807	73151807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.P1396S	1.000	101	0%	96	24%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
DBC1	1620	genome.wustl.edu	37	9	121929877	121929877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.R591C	1.000	44	0%	45	15.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
OLFML2A	169611	genome.wustl.edu	37	9	127572368	127572370	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182487.2	+1	validated	p.E546in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
BRD3	8019	genome.wustl.edu	37	9	136913227	136913227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007371.3	-1	reviewed	p.P355L	1.000	21	0%	26	38.5%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
NDOR1	27158	genome.wustl.edu	37	9	140109649	140109649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144026.1	+1	reviewed	p.L390V	0.173	69	0%	71	25.4%	20	40%	benign(0.001)	tolerated(1)	-	HMMPfam_FAD_binding_1,superfamily_Riboflavin_synthase_like_b-brl
DHTKD1	55526	genome.wustl.edu	37	10	12150004	12150004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018706.5	+1	validated	p.R715H	1.000	92	0%	120	50%	12	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
ABI1	10006	genome.wustl.edu	37	10	27037652	27037652	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005470.3	-1	validated	p.T458	1.000	154	0%	163	49.7%	52	55.7%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ANKRD26	22852	genome.wustl.edu	37	10	27326231	27326231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.A861T	0.506	136	0%	206	49%	1	0%	benign(0)	tolerated(1)	-	NULL
ANK3	288	genome.wustl.edu	37	10	61844449	61844449	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.R1329*	1.000	90	0%	130	16.2%	24	12.5%	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63845617	63845618	+	Frame_Shift_Ins	INS	-	-	AAAGA	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.E455fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MICU1	10367	genome.wustl.edu	37	10	74322806	74322806	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006077.2	-1	validated	p.S59	0.997	433	0%	502	23.3%	29	13.7%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T	rs121909224	byCluster	TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130*	1.000	188	0%	229	48%	17	29.4%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
BTRC	8945	genome.wustl.edu	37	10	103285953	103285953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033637.2	+1	reviewed	p.G247V	1.000	175	0%	205	40%	9	77.7%	possibly_damaging(0.471)	deleterious(0.03)	deleterious(0.520)	superfamily_F-box domain
GBF1	8729	genome.wustl.edu	37	10	104139663	104139663	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004193.1	+1	provisional	p.V1609	0.999	152	0%	189	21.7%	53	24.5%	-	-	-	NULL
SLC18A2	6571	genome.wustl.edu	37	10	119013922	119013922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003054.4	+1	reviewed	p.G205D	1.000	66	0%	73	23.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
MUC6	4588	genome.wustl.edu	37	11	1013930	1013930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005961.2	-1	validated	p.R2371C	0.991	10	0%	18	44.4%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00041
CHRM4	1132	genome.wustl.edu	37	11	46406742	46406742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000741.2	-1	reviewed	p.C456R	1.000	141	0%	140	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
TNKS1BP1	85456	genome.wustl.edu	37	11	57077914	57077914	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033396.2	-1	validated	p.G757	0.942	31	0%	41	36.6%	77	31.1%	-	-	-	NULL
PITPNM1	9600	genome.wustl.edu	37	11	67267883	67267883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004910.2	-1	validated	p.R217Q	0.996	25	0%	25	20%	29	37.9%	possibly_damaging(0.914)	tolerated(0.09)	deleterious(0.662)	HMMPfam_IP_trans,superfamily_Bet v1-like
SERPINH1	871	genome.wustl.edu	37	11	75282990	75282990	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001235.2	+1	reviewed	p.R373	0.011	26	0%	22	31.8%	342	8.1%	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SLC2A14	144195	genome.wustl.edu	37	12	7982489	7982489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153449.2	-1	provisional	p.G152A	0.987	115	0%	131	22.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter
KIAA1467	57613	genome.wustl.edu	37	12	13220110	13220110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020853.1	+1	validated	p.L341P	1.000	86	0%	69	10.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DERA	51071	genome.wustl.edu	37	12	16115839	16115839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015954.2	+1	validated	p.V156M	0.999	207	0%	213	27.2%	33	45.4%	possibly_damaging(0.502)	tolerated(0.46)	neutral(0.180)	HMMPfam_DeoC,superfamily_SSF51569
KIAA0528	9847	genome.wustl.edu	37	12	22676470	22676470	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.G230	1.000	116	0%	116	36.2%	7	0%	-	-	-	NULL
KRT8	3856	genome.wustl.edu	37	12	53291335	53291335	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002273.3	-1	reviewed	p.F443	0.747	25	0%	41	24.4%	2401	48.2%	-	-	-	NULL
CS	1431	genome.wustl.edu	37	12	56676236	56676236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004077.2	-1	reviewed	p.A186T	1.000	81	0%	89	25.8%	136	41.1%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
NACA	4666	genome.wustl.edu	37	12	57113428	57113428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.P629L	0.976	81	0%	75	42.7%	0	-	unknown(0)	-	-	NULL
TRHDE	29953	genome.wustl.edu	37	12	72893384	72893384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013381.2	+1	reviewed	p.D519V	1.000	163	0%	147	27.2%	0	-	possibly_damaging(0.951)	tolerated(0.08)	deleterious(0.694)	HMMPfam_Peptidase_M1,superfamily_SSF55486
SACS	26278	genome.wustl.edu	37	13	23939315	23939315	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455470	-1	known	p.A49T	0.048	230	0%	180	19.4%	1	0%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
PDS5B	23047	genome.wustl.edu	37	13	33258137	33258137	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015032.3	+1	reviewed	p.R394*	1.000	171	0%	181	23.8%	5	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
ABHD4	63874	genome.wustl.edu	37	14	23072420	23072420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022060.2	+1	validated	p.G80S	1.000	47	0%	47	40.4%	25	52%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF53474
PRKD1	5587	genome.wustl.edu	37	14	30135303	30135303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002742.2	-1	validated	p.R172H	1.000	130	0%	123	36.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
TTC7B	145567	genome.wustl.edu	37	14	91059856	91059856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010854.1	-1	provisional	p.T694M	1.000	44	0%	35	40%	14	14.2%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	superfamily_TPR-like
TJP1	7082	genome.wustl.edu	37	15	30018600	30018600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003257.3	-1	validated	p.W799R	0.999	183	0%	163	27%	11	18.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIP4	9325	genome.wustl.edu	37	15	64687693	64687693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016213.3	+1	validated	p.T123M	0.000	154	0%	128	30.5%	22	36.3%	benign(0.026)	tolerated(0.1)	neutral(0.287)	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84286952	84286952	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003027.3	+1	validated	p.D319E	1.000	73	0%	81	25.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NMB	4828	genome.wustl.edu	37	15	85198625	85198625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205858.1	-1	validated	p.G114D	0.141	111	0%	107	29.9%	20	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
XPO6	23214	genome.wustl.edu	37	16	28117748	28117748	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015171.2	-1	provisional	p.P856	1.000	211	0%	172	33.1%	86	41.8%	-	-	-	superfamily_ARM repeat
ATXN2L	11273	genome.wustl.edu	37	16	28846988	28846988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148414.1	+1	reviewed	p.P935H	1.000	33	0%	27	25.9%	114	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX38	9785	genome.wustl.edu	37	16	72137671	72137671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014003.3	+1	reviewed	p.G603E	0.995	79	0%	58	24.1%	27	18.5%	benign(0.025)	deleterious(0.04)	neutral(0.350)	HMMSmart_DEXDc,superfamily_SSF52540
CMIP	80790	genome.wustl.edu	37	16	81641294	81641294	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198390.2	+1	validated	p.L141	1.000	52	0%	50	32%	15	26.6%	-	-	-	superfamily_PH domain-like
NLRP1	22861	genome.wustl.edu	37	17	5418368	5418368	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033004.3	-1	reviewed	p.P1376	0.000	52	0%	45	15.6%	4	0%	-	-	-	superfamily_DEATH domain
TNFSF12	8742	genome.wustl.edu	37	17	7460486	7460486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003809.2	+1	reviewed	p.R190H	1.000	46	0%	63	23.8%	69	14.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
SLC13A2	9058	genome.wustl.edu	37	17	26821491	26821491	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003984.3	+1	validated	p.L423fs	0.955	-	-	-	-	-	-	-	-	-	HMMPfam_Na_sulph_symp
FLOT2	2319	genome.wustl.edu	37	17	27208261	27208261	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004475.2	-1	reviewed	p.Q349	1.000	46	0%	70	15.7%	149	37.5%	-	-	-	NULL
SEZ6	124925	genome.wustl.edu	37	17	27308668	27308668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178860.4	-1	validated	p.L149F	0.076	77	0%	42	19%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
KRTAP9-3	83900	genome.wustl.edu	37	17	39388981	39388981	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031962.2	+1	reviewed	p.C76	0.014	165	0%	133	14.3%	0	-	-	-	-	HMMPfam_Keratin_B2
KRT35	3886	genome.wustl.edu	37	17	39635117	39635117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002280.4	-1	reviewed	p.R281H	0.961	44	0%	63	30.2%	0	-	possibly_damaging(0.496)	tolerated(0.06)	deleterious(0.488)	superfamily_Prefoldin,HMMPfam_Filament
DDX42	11325	genome.wustl.edu	37	17	61864495	61864495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007372.2	+1	reviewed	p.P29R	1.000	138	0%	128	28.9%	27	51.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF19	124602	genome.wustl.edu	37	17	72349652	72349652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153209.3	+1	validated	p.L747P	1.000	35	0%	51	15.7%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
RAB3D	9545	genome.wustl.edu	37	19	11447998	11447998	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004283.3	-1	validated	p.L26	0.171	101	0%	101	23.8%	56	44.6%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
LOC100289566	100289566	genome.wustl.edu	37	19	15061191	15061191	+	Nonsense_Mutation	SNP	C	C	T	rs180857252	by1000genomes	TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343627.1	+1	model	p.R16*	0.997	47	0%	54	42.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIK3R2	5296	genome.wustl.edu	37	19	18273793	18273793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005027.2	+1	validated	p.K376E	1.000	76	0%	76	25%	42	47.6%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ZNF569	148266	genome.wustl.edu	37	19	37904093	37904093	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152484.2	-1	validated	p.S489	1.000	195	0%	162	30.9%	2	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PAPL	390928	genome.wustl.edu	37	19	39589266	39589266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004318.2	+1	validated	p.T97M	0.207	38	0%	39	25.6%	0	-	probably_damaging(0.973)	tolerated(0.13)	deleterious(0.667)	superfamily_Purple_Pase_N
CYP2A6	1548	genome.wustl.edu	37	19	41354666	41354666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000762.5	-1	reviewed	p.V116M	0.001	12	0%	14	35.7%	0	-	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	HMMPfam_p450,superfamily_Cytochrome P450
LIPE	3991	genome.wustl.edu	37	19	42911468	42911468	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.P665	1.000	38	0%	40	37.5%	1	0%	-	-	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
SYMPK	8189	genome.wustl.edu	37	19	46334652	46334652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004819.2	-1	reviewed	p.T530A	0.992	54	0%	50	34%	57	40.3%	possibly_damaging(0.642)	tolerated(0.5)	neutral(0.235)	superfamily_ARM repeat
DHX34	9704	genome.wustl.edu	37	19	47876077	47876077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.R620H	1.000	7	0.000	19	0.579	8	50%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTOV1	53635	genome.wustl.edu	37	19	50358132	50358132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017432.3	+1	provisional	p.P146L	1.000	33	0%	27	40.7%	185	32.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF471	57573	genome.wustl.edu	37	19	57029948	57029948	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	e3+2	0.456	197	0%	181	25.4%	0	-	-	-	-	-
TBC1D20	128637	genome.wustl.edu	37	20	428590	428590	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144628.2	-1	validated	p.R67*	0.000	111	0%	133	32.3%	23	17.3%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
SIRPG	55423	genome.wustl.edu	37	20	1629827	1629827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018556.3	-1	reviewed	p.D101Y	0.717	534	0%	478	28.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TGM6	343641	genome.wustl.edu	37	20	2380983	2380983	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198994.2	+1	validated	p.V294	0.016	45	0%	62	33.9%	0	-	-	-	-	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases
ADA	100	genome.wustl.edu	37	20	43251282	43251282	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000022.2	-1	reviewed	p.W264*	1.000	79	1.3%	65	29.2%	7	0%	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
CBLN4	140689	genome.wustl.edu	37	20	54579189	54579189	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080617.4	-1	reviewed	p.A13	0.507	18	0%	22	22.7%	0	-	-	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41450624	41450624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.N1567K	1.000	74	0%	77	36.4%	0	-	benign(0.208)	tolerated(0.05)	neutral(0.365)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41505884	41505884	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.D1153	0.193	141	0%	124	26.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SGSM1	129049	genome.wustl.edu	37	22	25294031	25294031	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039948.2	+1	validated	p.N760	0.463	81	0%	75	28%	0	-	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
NUP50	10762	genome.wustl.edu	37	22	45580486	45580486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007172.3	+1	reviewed	p.E453*	1.000	108	0%	91	29.7%	20	30%	-	-	-	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
WWC3	55841	genome.wustl.edu	37	X	10085322	10085322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.S408N	0.990	23	0%	31	29%	9	55.5%	benign(0.007)	tolerated(1)	-	NULL
AMELX	265	genome.wustl.edu	37	X	11316222	11316222	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182680.1	+1	reviewed	e3-1	0.510	375	0%	333	29.1%	0	-	-	-	-	-
DDX53	168400	genome.wustl.edu	37	X	23018206	23018206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.A11V	0.000	64	0%	72	29.2%	0	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
CXorf58	254158	genome.wustl.edu	37	X	23934436	23934436	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435707	+1	known	p.V112I	0.219	256	0%	217	21.2%	0	-	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32827692	32827692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.Q189H	1.000	128	0%	126	31%	4	0%	possibly_damaging(0.879)	deleterious(0.01)	deleterious(0.748)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PAGE1	8712	genome.wustl.edu	37	X	49455895	49455895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003785.3	-1	reviewed	p.R83S	0.000	267	0%	238	30.7%	5	100%	benign(0.154)	-	-	HMMPfam_GAGE
SLC7A3	84889	genome.wustl.edu	37	X	70145749	70145749	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048164.2	-1	reviewed	p.E592fs	0.790	-	-	-	-	-	-	-	-	-	NULL
CT47B1	643311	genome.wustl.edu	37	X	120009295	120009295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145718.1	-1	validated	p.Q77R	0.000	28	0%	25	40%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122561820	122561820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264357	+1	known	p.V636F	1.000	264	0.4%	276	29.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
ODZ1	10178	genome.wustl.edu	37	X	123514956	123514956	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.T2536	0.985	82	0%	68	39.7%	0	-	-	-	-	NULL
LOC100130935	100130935	genome.wustl.edu	37	X	151896348	151896348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001721280.1	-1	model	p.L89M	0.002	420	0%	378	35.2%	0	-	-	-	-	NULL
HCFC1	3054	genome.wustl.edu	37	X	153223662	153223662	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	p.A614	0.029	71	0%	86	36%	13	0%	-	-	-	NULL
PLXNA3	55558	genome.wustl.edu	37	X	153692557	153692557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017514.3	+1	reviewed	p.E577K	1.000	34	0%	22	54.5%	16	0%	possibly_damaging(0.527)	tolerated(0.25)	neutral(0.215)	NULL
IKBKG	8517	genome.wustl.edu	37	X	153780301	153780301	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0U7-01	TCGA-BS-A0U7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099856.2	+1	reviewed	p.G96	0.092	53	0%	59	33.9%	34	0%	-	-	-	NULL
