Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UBXN11	91544	genome.wustl.edu	37	1	26608854	26608883	+	In_Frame_Del	DEL	CCGGGACCGGGACCGGGACTGGGGCCGGGA	CCGGGACCGGGACCGGGACTGGGGCCGGGA	-	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	CCGGGACCGGGACCGGGACTGGGGCCGGGA	CCGGGACCGGGACCGGGACTGGGGCCGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183008.2	-1	reviewed	p.GPSPGPGPGP492in_frame_del	0.042:0.024:0.015:0.010:0.006:0.004:0.004:0.008:0.005:0.003:0.002:0.004:0.007:0.010:0.014:0.019:0.018:0.000:0.000:0.000:0.001:0.002:0.005:0.007:0.007:0.000:0.001:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
TNNI3K	51086	genome.wustl.edu	37	1	74954913	74954913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112808.1	+1	validated	p.E822G	1.000	116	0%	35	40%	0	-	possibly_damaging(0.736)	deleterious(0.05)	deleterious(0.615)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RGS5	8490	genome.wustl.edu	37	1	163172591	163172591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003617.3	-1	validated	p.C12Y	1.000	85	0%	146	24.7%	2	0%	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	NULL
FAM5C	339479	genome.wustl.edu	37	1	190423818	190423818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.R68Q	1.000	114	0%	197	67.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MACPF
PXDN	7837	genome.wustl.edu	37	2	1652781	1652781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.R924L	0.097	3	0.000	8	0.875	5	40%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
RANBP2	5903	genome.wustl.edu	37	2	109384143	109384143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.N2383S	1.000	171	0%	128	26.6%	3	66.6%	probably_damaging(0.994)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
WDR75	84128	genome.wustl.edu	37	2	190339478	190339478	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032168.1	+1	provisional	p.A744	0.303	110	0%	142	65.5%	55	67.2%	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	byCluster	TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33C	1.000	49	0%	43	34.9%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACNA2D2	9254	genome.wustl.edu	37	3	50421684	50421684	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005505.1	-1	reviewed	p.N199Y	1.000	143	0%	281	38.4%	0	-	benign(0.223)	deleterious(0.03)	neutral(0.387)	HMMPfam_VWA_N
SI	6476	genome.wustl.edu	37	3	164704924	164704924	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	e44+2	1.000	162	0%	83	47%	0	-	-	-	-	-
PIK3CA	5290	genome.wustl.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C	rs121913274	byCluster	TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E545A	1.000	139	0%	58	46.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
GAK	2580	genome.wustl.edu	37	4	853415	853415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005255.2	-1	validated	p.D1088N	0.981	18	0%	73	38.4%	15	60%	benign(0.054)	tolerated(1)	neutral(0.004)	NULL
NDNF	79625	genome.wustl.edu	37	4	121966964	121966964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024574.3	-1	validated	p.W10L	1.000	31	0%	21	42.9%	0	-	unknown(0)	tolerated(1)	-	NULL
FSTL5	56884	genome.wustl.edu	37	4	162376279	162376279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020116.3	-1	validated	p.V573A	0.999	110	0%	60	50%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_Amine_DH_B_like
SKP2	6502	genome.wustl.edu	37	5	36168528	36168528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005983.2	+1	reviewed	p.R217Q	0.001	128	0%	124	41.9%	2	50%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMSmart_SM00367,superfamily_RNI-like
PPWD1	23398	genome.wustl.edu	37	5	64875349	64875349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015342.2	+1	validated	p.E420V	1.000	165	0%	105	38.1%	0	-	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	superfamily_WD40_like
MAP3K5	4217	genome.wustl.edu	37	6	137017156	137017161	+	In_Frame_Del	DEL	TTTCTA	TTTCTA	-	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	TTTCTA	TTTCTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005923.3	-1	reviewed	p.LEKLPT337in_frame_del*	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SOX17	64321	genome.wustl.edu	37	8	55372518	55372518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022454.3	+1	reviewed	p.S403I	1.000	16	0%	55	45.5%	48	56.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FOXD4	2298	genome.wustl.edu	37	9	118067	118067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207305.3	-1	validated	p.R18Q	0.556	51	0%	203	20.2%	0	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
GLT6D1	360203	genome.wustl.edu	37	9	138516117	138516117	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182974.2	-1	provisional	p.P219	0.000	131	0%	98	38.8%	0	-	-	-	-	HMMPfam_Glyco_transf_6,superfamily_SSF53448
DDX50	79009	genome.wustl.edu	37	10	70673835	70673837	+	In_Frame_Del	DEL	ACT	ACT	-	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	ACT	ACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024045.1	+1	reviewed	p.T322in_frame_del	1.000:1.000:0.993	-	-	-	-	-	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MUC5B	727897	genome.wustl.edu	37	11	1247869	1247869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.R75Q	0.987	5	0.000	35	0.486	0	-	probably_damaging(0.99)	-	-	HMMSmart_SM00216
PACSIN3	29763	genome.wustl.edu	37	11	47199528	47199528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016223.4	-1	reviewed	p.R410L	0.998	17	0%	131	45%	51	54.9%	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
OR8I2	120586	genome.wustl.edu	37	11	55861593	55861593	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003750.1	+1	provisional	p.A270	0.001	69	0%	37	13.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C11orf53	341032	genome.wustl.edu	37	11	111154826	111154826	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198498.1	+1	predicted	p.Y11	0.160	48	0%	83	38.6%	0	-	-	-	-	NULL
TECTA	7007	genome.wustl.edu	37	11	121028792	121028792	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.I1516	1.000	21	0%	95	38.9%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
INHBC	3626	genome.wustl.edu	37	12	57843560	57843560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005538.2	+1	reviewed	p.A272T	0.980	26	0%	61	39.3%	0	-	possibly_damaging(0.937)	tolerated(0.18)	neutral(0.439)	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines
DYRK2	8445	genome.wustl.edu	37	12	68051877	68051877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006482.2	+1	reviewed	p.A397D	1.000	70	0%	134	41.8%	2	0%	possibly_damaging(0.714)	tolerated(0.18)	neutral(0.314)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KNTC1	9735	genome.wustl.edu	37	12	123089426	123089426	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.D1726	0.996	34	0%	39	43.6%	6	50%	-	-	-	PatternScan_BZIP_BASIC,HMMPfam_Rod_C
EP400	57634	genome.wustl.edu	37	12	132512056	132512056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.P1696A	0.835	17	0%	57	42.1%	1	100%	unknown(0)	-	-	NULL
WDR89	112840	genome.wustl.edu	37	14	64066162	64066162	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008726.1	-1	validated	p.E167*	1.000	140	0%	208	45.2%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MFAP1	4236	genome.wustl.edu	37	15	44106856	44106856	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005926.2	-1	validated	p.Q154*	1.000	202	0.5%	268	42.9%	2	0%	-	-	-	NULL
RASGRF1	5923	genome.wustl.edu	37	15	79339274	79339274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002891.4	-1	reviewed	p.R231Q	1.000	37	0%	42	31%	1	0%	possibly_damaging(0.756)	tolerated(0.33)	neutral(0.303)	superfamily_DBL homology domain (DH-domain)
CHD9	80205	genome.wustl.edu	37	16	53191081	53191081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.N360K	1.000	79	0%	44	38.6%	0	-	benign(0.323)	deleterious(0.01)	deleterious(0.507)	NULL
MC1R	4157	genome.wustl.edu	37	16	89986227	89986227	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002386.3	+1	reviewed	p.A187	0.922	8	0.000	59	0.339	20	65%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM57A	79850	genome.wustl.edu	37	17	636266	636267	+	Frame_Shift_Ins	INS	-	-	GGGCC	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451373	+1	known	p.P92fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
KRT24	192666	genome.wustl.edu	37	17	38857539	38857539	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019016.2	-1	reviewed	p.N236K	0.310	48	0%	58	41.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Filament
SPOP	8405	genome.wustl.edu	37	17	47696599	47696599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007226.1	-1	reviewed	p.M117V	1.000	250	0%	210	42.4%	2	0%	possibly_damaging(0.774)	tolerated(0.2)	neutral(0.337)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
CLASRP	11129	genome.wustl.edu	37	19	45543479	45543479	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007056.2	+1	validated	p.H3	1.000	85	0%	221	47.5%	9	11.1%	-	-	-	NULL
NPAS1	4861	genome.wustl.edu	37	19	47535971	47535971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002517.2	+1	reviewed	p.I168T	1.000	58	0%	130	49.2%	0	-	possibly_damaging(0.681)	tolerated(0.28)	neutral(0.274)	HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785
DNAAF3	352909	genome.wustl.edu	37	19	55677760	55677760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178837.3	-1	validated	p.G55R	0.113	12	0%	50	48%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BPIFA2	140683	genome.wustl.edu	37	20	31767409	31767409	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080574.2	+1	validated	e6-1	0.204	142	0%	348	60.6%	0	-	-	-	-	-
LAMA5	3911	genome.wustl.edu	37	20	60893979	60893979	+	Missense_Mutation	SNP	C	C	T	rs141245936	by1000genomes	TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.R2321Q	0.040	5	0.000	22	0.409	16	68.7%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	HMMPfam_Laminin_I
BRWD1	54014	genome.wustl.edu	37	21	40670369	40670369	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.R113fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PRR14L	253143	genome.wustl.edu	37	22	32112010	32112010	+	Nonsense_Mutation	SNP	G	G	C	rs138229470	by1000genomes	TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.Y605*	0.000	130	0%	50	32%	0	-	-	-	-	NULL
MSN	4478	genome.wustl.edu	37	X	64947697	64947697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.R40G	0.998	570	0.2%	214	37.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
GDPD2	54857	genome.wustl.edu	37	X	69644862	69644862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017711.3	+1	reviewed	p.V10I	0.010	14	0%	33	42.4%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
UPRT	139596	genome.wustl.edu	37	X	74523321	74523321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145052.3	+1	reviewed	p.G302E	1.000	308	0%	101	37.6%	1	100%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	superfamily_PRTase-like
HAUS7	55559	genome.wustl.edu	37	X	152719912	152719912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UT-01	TCGA-BS-A0UT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017518.6	-1	reviewed	p.V339M	0.001	8	0.000	42	0.405	20	0%	possibly_damaging(0.861)	tolerated(0.1)	deleterious(0.619)	NULL
