Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA5	23461	genome.wustl.edu	37	17	67282161	67282161	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67282161	67282161	T	C	SNP	ABCA5	NM_018672	human	genbank	57_37b	-1	reviewed	missense	c.2150	p.Y717C	0.003	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ANK3	288	genome.wustl.edu	37	10	61819641	61819641	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	61819641	61819641	G	C	SNP	ANK3	NM_001149	human	genbank	57_37b	-1	reviewed	missense	c.2282	p.P761R	1.000	NULL	HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
C11orf53	341032	genome.wustl.edu	37	11	111156467	111156467	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111156467	111156467	G	A	SNP	C11orf53	NM_198498	human	genbank	57_37b	+1	predicted	silent	c.399	p.T133	0.008	NULL	NULL	-	no_errors	
CACNA2D3	55799	genome.wustl.edu	37	3	54786629	54786629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54786629	54786629	C	T	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	missense	c.1171	p.R391C	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CENPE	1062	genome.wustl.edu	37	4	104059573	104059573	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	104059573	104059573	T	C	SNP	CENPE	NM_001813	human	genbank	57_37b	-1	validated	missense	c.6238	p.R2080G	0.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
COL4A5	1287	genome.wustl.edu	37	X	107814670	107814670	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107814670	107814670	G	T	SNP	COL4A5	NM_033380	human	genbank	57_37b	+1	reviewed	missense	c.412	p.G138C	1.000	HMMPfam_Collagen	HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_C4,HMMSmart_C4	-	no_errors	
COPS3	8533	genome.wustl.edu	37	17	17163709	17163709	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	17163709	17163709	T	C	SNP	COPS3	NM_003653	human	genbank	57_37b	-1	reviewed	missense	c.842	p.K281R	1.000	HMMPfam_PCI	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	
CPB2	1361	genome.wustl.edu	37	13	46629931	46629931	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46629931	46629931	G	T	SNP	CPB2	NM_001872	human	genbank	57_37b	-1	reviewed	silent	c.1053	p.T351	0.007	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	-	no_errors	
CRHR1	1394	genome.wustl.edu	37	17	43906585	43906585	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43906585	43906585	A	C	SNP	CRHR1	NM_001145146	human	genbank	57_37b	+1	reviewed	missense	c.332	p.K111T	1.000	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	3057330	3057330	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	3057330	3057330	C	T	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	silent	c.5103	p.G1701	0.632	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
DAP3	7818	genome.wustl.edu	37	1	155701787	155701787	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155701787	155701787	C	A	SNP	DAP3	NM_004632	human	genbank	57_37b	+1	reviewed	missense	c.956	p.P319H	0.977	HMMPfam_DAP3	HMMPfam_DAP3	-	no_errors	
DKK2	27123	genome.wustl.edu	37	4	107845202	107845202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	107845202	107845202	C	T	SNP	DKK2	NM_014421	human	genbank	57_37b	-1	reviewed	missense	c.689	p.R230H	1.000	NULL	HMMPfam_Dickkopf_N	-	no_errors	
DNHD1	144132	genome.wustl.edu	37	11	6561187	6561187	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6561187	6561187	C	T	SNP	DNHD1	NM_144666	human	genbank	57_37b	+1	provisional	missense	c.3502	p.R1168C	1.000	HMMPfam_DHC_N2,superfamily_Ferritin-like	HMMPfam_DHC_N2,superfamily_Ferritin-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynein_heavy	-	no_errors	
DUOX1	53905	genome.wustl.edu	37	15	45444508	45444508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	45444508	45444508	C	T	SNP	DUOX1	NM_017434	human	genbank	57_37b	+1	reviewed	missense	c.3218	p.T1073M	0.001	NULL	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6	-	no_errors	
ENG	2022	genome.wustl.edu	37	9	130605471	130605471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130605471	130605471	C	T	SNP	ENG	NM_001114753	human	genbank	57_37b	-1	reviewed	missense	c.121	p.E41K	0.009	NULL	HMMPfam_Zona_pellucida	-	no_errors	
ENSG00000246636	0	genome.wustl.edu	37	6	90353940	90353940	+	RNA	SNP	G	G	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90353940	90353940	G	C	SNP	ENSG00000246636	ENST00000501642	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115873	8115874	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115873	8115874	-	C	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1222_1223	p.P409fs	0.876:0.903	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GNG5P2	0	genome.wustl.edu	37	X	109590120	109590120	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	109590120	109590120	G	A	SNP	GNG5P2	ENST00000372054	human	ensembl	57_37b	-1	known	silent	c.18	p.S6	0.998	superfamily_Transducin (heterotrimeric G protein) gamma chain	superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224	-	no_errors	
GOLGA1	2800	genome.wustl.edu	37	9	127683437	127683437	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127683437	127683437	T	C	SNP	GOLGA1	NM_002077	human	genbank	57_37b	-1	reviewed	missense	c.814	p.I272V	0.988	NULL	superfamily_Prefoldin,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors	
GPR84	53831	genome.wustl.edu	37	12	54757355	54757355	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54757355	54757355	C	A	SNP	GPR84	NM_020370	human	genbank	57_37b	-1	provisional	missense	c.281	p.R94M	0.991	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
GUF1	60558	genome.wustl.edu	37	4	44682858	44682858	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	44682858	44682858	C	G	SNP	GUF1	NM_021927	human	genbank	57_37b	+1	validated	missense	c.425	p.P142R	1.000	superfamily_SSF52540,HMMPfam_GTP_EFTU	superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,HMMPfam_EFG_C,HMMPfam_LepA_C	-	no_errors	
HFE	3077	genome.wustl.edu	37	6	26093039	26093039	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26093039	26093039	C	G	SNP	HFE	NM_000410	human	genbank	57_37b	+1	reviewed	missense	c.743	p.A248G	0.741	superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set,PatternScan_IG_MHC	-	no_errors	
KBTBD4	55709	genome.wustl.edu	37	11	47594816	47594816	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47594816	47594816	T	C	SNP	KBTBD4	NM_018095	human	genbank	57_37b	-1	validated	missense	c.1271	p.D424G	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,HMMPfam_Kelch_2,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	-	no_errors	
KIAA1407	57577	genome.wustl.edu	37	3	113721362	113721362	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113721362	113721362	G	A	SNP	KIAA1407	NM_020817	human	genbank	57_37b	-1	predicted	nonsense	c.2002	p.R668*	1.000	NULL	NULL	-	no_errors	
KIF26B	55083	genome.wustl.edu	37	1	245766076	245766076	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245766076	245766076	C	T	SNP	KIF26B	NM_018012	human	genbank	57_37b	+1	provisional	silent	c.1548	p.D516	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	-	no_errors	
LARP1	23367	genome.wustl.edu	37	5	154181757	154181757	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	154181757	154181757	A	T	SNP	LARP1	NM_015315	human	genbank	57_37b	+1	validated	missense	c.1676	p.D559V	1.000	NULL	superfamily_SSF46785,HMMSmart_LA,HMMPfam_La,PatternScan_CYTOCHROME_B5_1,HMMSmart_DM15	-	no_errors	
LGALS3BP	3959	genome.wustl.edu	37	17	76968195	76968195	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76968195	76968195	C	T	SNP	LGALS3BP	NM_005567	human	genbank	57_37b	-1	reviewed	silent	c.1221	p.R407	0.421	NULL	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_BACK	-	no_errors	
LOC146880	146880	genome.wustl.edu	37	17	62758551	62758551	+	RNA	SNP	G	G	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62758551	62758551	G	C	SNP	LOC146880	NR_026899	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors	
LOC146880	146880	genome.wustl.edu	37	17	62758648	62758648	+	RNA	SNP	C	C	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62758648	62758648	C	G	SNP	LOC146880	NR_026899	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors	
LRP6	4040	genome.wustl.edu	37	12	12397348	12397348	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12397348	12397348	C	T	SNP	LRP6	NM_002336	human	genbank	57_37b	-1	reviewed	silent	c.297	p.G99	0.876	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors	
MLLT6	4302	genome.wustl.edu	37	17	36865482	36865482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36865482	36865482	C	T	SNP	MLLT6	ENST00000358312	human	ensembl	57_37b	+1	known	missense	c.347	p.A116V	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
MYO6	4646	genome.wustl.edu	37	6	76554660	76554663	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	76554660	76554663	ACAA	-	DEL	MYO6	NM_004999	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.863_866	p.K289fs	1.000:1.000:1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	(deletion:cds_exon[76554614,76554694])	no_errors	
NEIL1	79661	genome.wustl.edu	37	15	75647144	75647144	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75647144	75647144	C	T	SNP	NEIL1	NM_024608	human	genbank	57_37b	+1	validated	nonsense	c.1087	p.R363*	0.000	NULL	superfamily_N-terminal domain of MutM-like DNA repair proteins,HMMPfam_Fapy_DNA_glyco,superfamily_S13-like H2TH domain,HMMPfam_H2TH,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_Neil1-DNA_bind	-	no_errors	
NR1H2	7376	genome.wustl.edu	37	19	50881600	50881600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50881600	50881600	C	T	SNP	NR1H2	NM_007121	human	genbank	57_37b	+1	validated	missense	c.376	p.R126W	1.000	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
NTNG2	84628	genome.wustl.edu	37	9	135073814	135073814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135073814	135073814	C	T	SNP	NTNG2	NM_032536	human	genbank	57_37b	+1	validated	silent	c.675	p.P225	0.040	HMMSmart_SM00136,HMMPfam_Laminin_N	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2	-	no_errors	
OR6B3	150681	genome.wustl.edu	37	2	240984860	240984860	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	240984860	240984860	T	C	SNP	OR6B3	NM_173351	human	genbank	57_37b	-1	provisional	silent	c.630	p.P210	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR6C70	390327	genome.wustl.edu	37	12	55863307	55863307	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55863307	55863307	T	C	SNP	OR6C70	NM_001005499	human	genbank	57_37b	-1	provisional	missense	c.616	p.I206V	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR8D4	338662	genome.wustl.edu	37	11	123777212	123777212	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123777212	123777212	T	G	SNP	OR8D4	NM_001005197	human	genbank	57_37b	+1	provisional	missense	c.74	p.L25R	0.678	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDH19	57526	genome.wustl.edu	37	X	99663201	99663201	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	99663201	99663201	G	T	SNP	PCDH19	NM_001105243	human	genbank	57_37b	-1	validated	missense	c.395	p.A132E	0.230	superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PELP1	27043	genome.wustl.edu	37	17	4576281	4576281	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4576281	4576281	C	A	SNP	PELP1	NM_014389	human	genbank	57_37b	-1	validated	missense	c.2005	p.G669C	0.374	NULL	HMMPfam_NUC201,HMMPfam_NUC202	-	no_errors	
PITPNM2	57605	genome.wustl.edu	37	12	123498580	123498580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123498580	123498580	G	A	SNP	PITPNM2	NM_020845	human	genbank	57_37b	-1	validated	missense	c.88	p.R30C	1.000	HMMPfam_IP_trans,superfamily_Bet v1-like	HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors	
PPAT	5471	genome.wustl.edu	37	4	57272683	57272683	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57272683	57272683	T	C	SNP	PPAT	NM_002703	human	genbank	57_37b	-1	reviewed	missense	c.380	p.N127S	1.000	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),superfamily_PRTase-like,HMMPfam_Pribosyltran	-	no_errors	
PPP3R2	5535	genome.wustl.edu	37	9	104356697	104356697	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104356697	104356697	G	A	SNP	PPP3R2	NM_147180	human	genbank	57_37b	-1	provisional	silent	c.516	p.I172	0.002	NULL	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand	-	no_errors	
PSTK	118672	genome.wustl.edu	37	10	124742808	124742809	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124742808	124742809	CT	-	DEL	PSTK	NM_153336	human	genbank	57_37b	+1	validated	frame_shift_del	c.529_530	p.L179fs	0.993:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_KTI12	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_KTI12	(deletion:cds_exon[124742788,124742986])	no_errors	
PTPRB	5787	genome.wustl.edu	37	12	70933795	70933795	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70933795	70933795	G	A	SNP	PTPRB	NM_001109754	human	genbank	57_37b	-1	reviewed	nonsense	c.5602	p.R1868*	0.871	NULL	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PTPRJ	5795	genome.wustl.edu	37	11	48164480	48164480	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	48164480	48164480	C	G	SNP	PTPRJ	NM_002843	human	genbank	57_37b	+1	reviewed	missense	c.2453	p.P818R	0.003	superfamily_FN_III-like,HMMSmart_FN3	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PTPRQ	374462	genome.wustl.edu	37	12	80935456	80935456	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	80935456	80935456	C	T	SNP	PTPRQ	ENST00000266688	human	ensembl	57_37b	+1	known	nonsense	c.3277	p.Q1093*	0.994	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PYHIN1	149628	genome.wustl.edu	37	1	158913619	158913619	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158913619	158913619	G	T	SNP	PYHIN1	NM_152501	human	genbank	57_37b	+1	validated	missense	c.1042	p.D348Y	0.018	HMMPfam_HIN	HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors	
RASA1	5921	genome.wustl.edu	37	5	86670139	86670140	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	86670139	86670140	-	A	INS	RASA1	NM_002890	human	genbank	57_37b	+1	reviewed	splice_site_ins	c.1934+2_1934+1	e14+2	1.000:1.000	-	-	-	no_errors	
SMURF2	64750	genome.wustl.edu	37	17	62553744	62553745	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62553744	62553745	AG	-	DEL	SMURF2	NM_022739	human	genbank	57_37b	-1	validated	frame_shift_del	c.1413_1412	p.P471fs	0.990:1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	(deletion:cds_exon[62553726,62553840])	no_errors	
SRPR	6734	genome.wustl.edu	37	11	126134994	126134994	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	126134994	126134994	A	G	SNP	SRPR	NM_003139	human	genbank	57_37b	-1	provisional	missense	c.1385	p.V462A	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_SRP54	HMMPfam_SRP-alpha_N,superfamily_SRP54,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_SRP54,PatternScan_SRP54	-	no_errors	
TAF1L	138474	genome.wustl.edu	37	9	32632815	32632815	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32632815	32632815	G	T	SNP	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	silent	c.2763	p.G921	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TANC2	26115	genome.wustl.edu	37	17	61428682	61428682	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61428682	61428682	G	T	SNP	TANC2	NM_025185	human	genbank	57_37b	+1	validated	missense	c.1657	p.D553Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors	
TMTC4	84899	genome.wustl.edu	37	13	101278370	101278370	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101278370	101278370	T	G	SNP	TMTC4	NM_032813	human	genbank	57_37b	-1	validated	missense	c.1541	p.K514T	0.965	superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors	
TMX4	56255	genome.wustl.edu	37	20	8000123	8000123	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	8000123	8000123	G	C	SNP	TMX4	NM_021156	human	genbank	57_37b	-1	provisional	missense	c.138	p.N46K	1.000	superfamily_Thiordxn-like_fd	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors	
TRIM25	7706	genome.wustl.edu	37	17	54978817	54978817	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	54978817	54978817	C	G	SNP	TRIM25	NM_005082	human	genbank	57_37b	-1	reviewed	missense	c.1050	p.Q350H	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
TRRAP	8295	genome.wustl.edu	37	7	98528431	98528431	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	98528431	98528431	T	A	SNP	TRRAP	NM_003496	human	genbank	57_37b	+1	validated	missense	c.3569	p.V1190D	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC	-	no_errors	
TTF1	7270	genome.wustl.edu	37	9	135273709	135273709	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135273709	135273709	G	A	SNP	TTF1	NM_007344	human	genbank	57_37b	-1	validated	silent	c.1596	p.V532	0.007	NULL	HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors	
USH1C	10083	genome.wustl.edu	37	11	17531314	17531314	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17531314	17531314	G	A	SNP	USH1C	NM_153676	human	genbank	57_37b	-1	reviewed	silent	c.1602	p.G534	0.370	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors	
WBP4	11193	genome.wustl.edu	37	13	41639395	41639395	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	41639395	41639395	G	T	SNP	WBP4	NM_007187	human	genbank	57_37b	+1	reviewed	missense	c.234	p.E78D	1.000	NULL	HMMSmart_ZnF_U1,HMMPfam_zf-U1,superfamily_SSF57667,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors	
ZSCAN5C	649137	genome.wustl.edu	37	19	56720339	56720339	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12M-01	TCGA-C8-A12M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56720339	56720339	T	G	SNP	ZSCAN5C	ENST00000376267	human	ensembl	57_37b	+1	known	missense	c.1261	p.F421V	0.692	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
