Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARHGAP9	64333	genome.wustl.edu	37	12	57872994	57872994	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57872994	57872994	G	A	SNP	ARHGAP9	NM_032496	human	genbank	57_37b	-1	reviewed	missense	c.196	p.R66C	0.966	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_WW_Rsp5_WWP,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
ATP5F1	515	genome.wustl.edu	37	1	112002198	112002198	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112002198	112002198	A	G	SNP	ATP5F1	NM_001688	human	genbank	57_37b	+1	reviewed	silent	c.633	p.E211	1.000	HMMPfam_Mt_ATP-synt_B	HMMPfam_Mt_ATP-synt_B	-	no_errors	
CACNA1C	775	genome.wustl.edu	37	12	2775903	2775903	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2775903	2775903	G	A	SNP	CACNA1C	NM_199460	human	genbank	57_37b	+1	reviewed	silent	c.4722	p.P1574	0.938	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CCDC18	343099	genome.wustl.edu	37	1	93646433	93646433	+	Silent	SNP	T	T	C	rs2255722	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-C8-A12N-01	TCGA-C8-A12N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	93646433	93646433	T	C	SNP	CCDC18	NM_206886	human	genbank	57_37b	+1	validated	silent	c.346	p.L116	0.094	NULL	superfamily_Prefoldin	-		
CD300LG	146894	genome.wustl.edu	37	17	41931261	41931261	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41931261	41931261	T	C	SNP	CD300LG	NM_145273	human	genbank	57_37b	+1	validated	missense	c.568	p.Y190H	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
COL17A1	1308	genome.wustl.edu	37	10	105811267	105811267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105811267	105811267	G	A	SNP	COL17A1	NM_000494	human	genbank	57_37b	-1	reviewed	silent	c.2010	p.S670	0.001	NULL	HMMPfam_Collagen	-	no_errors	
ENSG00000243475	0	genome.wustl.edu	37	16	9693997	9693997	+	RNA	SNP	C	C	G	rs8044433	byCluster;byFrequency;by1000genomes	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	9693997	9693997	C	G	SNP	ENSG00000243475	ENST00000479585	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.015	-	-	-		
ENSG00000245549	0	genome.wustl.edu	37	1	16950449	16950449	+	RNA	SNP	A	A	G	rs11260846	byCluster;by2Hit2Allele;byHapMap	TCGA-C8-A12N-01	TCGA-C8-A12N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950449	16950449	A	G	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.983	-	-	-		
ENSG00000245658	0	genome.wustl.edu	37	9	74970815	74970815	+	RNA	SNP	T	T	C	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	74970815	74970815	T	C	SNP	ENSG00000245658	ENST00000502052	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	
EPHA1	2041	genome.wustl.edu	37	7	143095047	143095047	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143095047	143095047	G	C	SNP	EPHA1	NM_005232	human	genbank	57_37b	-1	reviewed	missense	c.1581	p.F527L	1.000	superfamily_Fibronectin type III,HMMPfam_fn3	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
EXOC3	11336	genome.wustl.edu	37	5	457049	457049	+	Silent	SNP	C	C	G	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	457049	457049	C	G	SNP	EXOC3	NM_007277	human	genbank	57_37b	+1	reviewed	silent	c.1092	p.V364	0.000	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors	
INHBA	3624	genome.wustl.edu	37	7	41729851	41729851	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	41729851	41729851	G	A	SNP	INHBA	NM_002192	human	genbank	57_37b	-1	reviewed	silent	c.678	p.S226	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors	
KRT27	342574	genome.wustl.edu	37	17	38933368	38933368	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38933368	38933368	G	T	SNP	KRT27	NM_181537	human	genbank	57_37b	-1	reviewed	silent	c.1263	p.V421	0.981	NULL	HMMPfam_Filament	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56167804	56167805	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56167804	56167805	AC	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.1369_1370	p.T457fs	0.994:0.997	superfamily_SSF57850,HMMSmart_RING	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56167737,56167858])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56189423	56189436	+	Frame_Shift_Del	DEL	TCTTCGTTGTTTAG	TCTTCGTTGTTTAG	-	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	TCTTCGTTGTTTAG	TCTTCGTTGTTTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56189423	56189436	TCTTCGTTGTTTAG	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.4455_4468	p.L1486fs	0.991:1.000:1.000:1.000:1.000:1.000:0.536:0.999:1.000:0.997:1.000:1.000:1.000:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	(deletion:cds_exon[56189358,56189507])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56189440	56189440	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56189440	56189440	T	A	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	missense	c.4472	p.L1491H	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MIR124-3	0	genome.wustl.edu	37	20	61809916	61809916	+	RNA	SNP	T	T	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61809916	61809916	T	A	SNP	MIR124-3	ENST00000384866	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
MLL2	8085	genome.wustl.edu	37	12	49445909	49445909	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49445909	49445909	G	-	DEL	MLL2	NM_003482	human	genbank	57_37b	-1	validated	frame_shift_del	c.1557	p.L520fs	0.999	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_RECOMBINASES_2,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	(deletion:cds_exon[49444669,49446207])	no_errors	
MYH11	4629	genome.wustl.edu	37	16	15831386	15831386	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15831386	15831386	G	T	SNP	MYH11	NM_001040114	human	genbank	57_37b	-1	reviewed	silent	c.3234	p.I1078	0.998	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
NCOA7	135112	genome.wustl.edu	37	6	126243897	126243897	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	126243897	126243897	G	C	SNP	NCOA7	NM_181782	human	genbank	57_37b	+1	validated	missense	c.2440	p.G814R	1.000	HMMSmart_SM00584,HMMPfam_TLD	superfamily_LysM domain,HMMSmart_SM00257,HMMPfam_LysM,HMMPfam_GRAM,HMMSmart_SM00584,HMMPfam_TLD	-	no_errors	
NDUFAB1	4706	genome.wustl.edu	37	16	23607504	23607504	+	Silent	SNP	G	G	C	rs466719	byCluster;by2Hit2Allele;by1000genomes	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23607504	23607504	G	C	SNP	NDUFAB1	NM_005003	human	genbank	57_37b	-1	validated	silent	c.108	p.L36	0.001	NULL	superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,PatternScan_EF_HAND_1	-		
NOTCH3	4854	genome.wustl.edu	37	19	15276820	15276820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15276820	15276820	G	A	SNP	NOTCH3	NM_000435	human	genbank	57_37b	-1	reviewed	silent	c.5445	p.D1815	0.696	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NOD,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
PARVA	55742	genome.wustl.edu	37	11	12399200	12399200	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	12399200	12399200	C	T	SNP	PARVA	NM_018222	human	genbank	57_37b	+1	provisional	silent	c.6	p.A2	0.874	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors	
PCDH19	57526	genome.wustl.edu	37	X	99605659	99605659	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	99605659	99605659	G	C	SNP	PCDH19	NM_001105243	human	genbank	57_37b	-1	validated	missense	c.2519	p.A840G	1.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
RARS	5917	genome.wustl.edu	37	5	167943847	167943847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167943847	167943847	C	T	SNP	RARS	NM_002887	human	genbank	57_37b	+1	reviewed	missense	c.1517	p.A506V	1.000	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain,HMMPfam_Arg_tRNA_synt_N,HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors	
RIMBP2	23504	genome.wustl.edu	37	12	130907060	130907060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130907060	130907060	C	T	SNP	RIMBP2	NM_015347	human	genbank	57_37b	-1	validated	missense	c.2408	p.R803Q	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors	
SBNO1	55206	genome.wustl.edu	37	12	123794131	123794131	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123794131	123794131	C	A	SNP	SBNO1	NM_018183	human	genbank	57_37b	-1	validated	splice_site	c.3440-1	e26-1	1.000	-	-	-	no_errors	
TAS2R31	0	genome.wustl.edu	37	12	11183409	11183409	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11183409	11183409	C	G	SNP	TAS2R31	NM_176885	human	genbank	57_37b	-1	provisional	missense	c.526	p.D176H	0.000	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors	
TTLL8	164714	genome.wustl.edu	37	22	50472912	50472912	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50472912	50472912	A	G	SNP	TTLL8	ENST00000440475	human	ensembl	57_37b	-1	known	missense	c.853	p.S285P	0.004	HMMPfam_TTL	HMMPfam_TTL,superfamily_SSF56059	-	no_errors	
ZC3H12B	340554	genome.wustl.edu	37	X	64721753	64721753	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12N-01	TCGA-C8-A12N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	64721753	64721753	T	C	SNP	ZC3H12B	NM_001010888	human	genbank	57_37b	+1	validated	missense	c.1142	p.L381P	1.000	NULL	NULL	-	no_errors	
