Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABRA	137735	hgsc.bcm.edu	37	8	107773724	107773724	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ALDH18A1	5832	hgsc.bcm.edu	37	10	97366699	97366699	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARFGAP2	84364	hgsc.bcm.edu	37	11	47193866	47193866	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASS1	445	hgsc.bcm.edu	37	9	133376405	133376405	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAP1	8314	hgsc.bcm.edu	37	3	52441304	52441304	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5orf4	10826	hgsc.bcm.edu	37	5	154200918	154200918	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC11	220136	hgsc.bcm.edu	37	18	47792751	47792751	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DMXL1	1657	hgsc.bcm.edu	37	5	118485176	118485176	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH8	1769	hgsc.bcm.edu	37	6	38770978	38770978	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM135A	57579	hgsc.bcm.edu	37	6	71190628	71190628	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBN1	2200	hgsc.bcm.edu	37	15	48748913	48748913	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLG	2312	hgsc.bcm.edu	37	1	152279668	152279668	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HGC6.3	100128124	hgsc.bcm.edu	37	6	168377106	168377106	+	Missense_Mutation	SNP	A	A	G	rs61754953	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HOOK3	84376	hgsc.bcm.edu	37	8	42821725	42821725	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JAK1	3716	hgsc.bcm.edu	37	1	65323363	65323363	+	Silent	SNP	G	G	A	rs55788790	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAMLD1	10046	hgsc.bcm.edu	37	X	149638089	149638089	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAPK15	225689	hgsc.bcm.edu	37	8	144800451	144800451	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYH2	4620	hgsc.bcm.edu	37	17	10428787	10428787	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NARF	26502	hgsc.bcm.edu	37	17	80436689	80436689	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NFATC4	4776	hgsc.bcm.edu	37	14	24845237	24845237	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PABPC3	5042	hgsc.bcm.edu	37	13	25670501	25670501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHA8	56140	hgsc.bcm.edu	37	5	140221437	140221437	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHGA7	56108	hgsc.bcm.edu	37	5	140764005	140764005	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLB1	151056	hgsc.bcm.edu	37	2	28752601	28752601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC38A4	55089	hgsc.bcm.edu	37	12	47173430	47173430	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAS2R31	259290	hgsc.bcm.edu	37	12	11183307	11183307	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM111	55831	hgsc.bcm.edu	37	3	10005828	10005828	+	Silent	SNP	G	G	A	rs113658691	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UNC13C	440279	hgsc.bcm.edu	37	15	54825223	54825223	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF623	9831	hgsc.bcm.edu	37	8	144732657	144732657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF804B	219578	hgsc.bcm.edu	37	7	88965272	88965272	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4641-01	TCGA-CJ-4641-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
