Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA10	10349	hgsc.bcm.edu	37	17	67212477	67212477	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ACTR5	79913	hgsc.bcm.edu	37	20	37394094	37394094	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP1A1	476	hgsc.bcm.edu	37	1	116936278	116936278	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C12orf43	64897	hgsc.bcm.edu	37	12	121444125	121444125	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C20orf106	200232	hgsc.bcm.edu	37	20	55100907	55100914	+	Frame_Shift_Del	DEL	AAAGAAAA	AAAGAAAA	-	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	AAAGAAAA	AAAGAAAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C5orf23	79614	hgsc.bcm.edu	37	5	32789785	32789785	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH3	1001	hgsc.bcm.edu	37	16	68721570	68721570	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHD2	1106	hgsc.bcm.edu	37	15	93492306	93492306	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRB1	23418	hgsc.bcm.edu	37	1	197396821	197396821	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSMD2	114784	hgsc.bcm.edu	37	1	34312501	34312501	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOCK10	55619	hgsc.bcm.edu	37	2	225684201	225684201	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FANCI	55215	hgsc.bcm.edu	37	15	89837146	89837146	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR158	57512	hgsc.bcm.edu	37	10	25701402	25701402	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HEATR1	55127	hgsc.bcm.edu	37	1	236714231	236714231	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSPA4	3308	hgsc.bcm.edu	37	5	132424179	132424179	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCTD16	57528	hgsc.bcm.edu	37	5	143586839	143586839	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLK3	354	hgsc.bcm.edu	37	19	51363270	51363270	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTMR15	22909	hgsc.bcm.edu	37	15	31206244	31206244	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9067458	9067458	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52643504	52643504	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE4C	5143	hgsc.bcm.edu	37	19	18322690	18322691	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDZD2	23037	hgsc.bcm.edu	37	5	32061215	32061215	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PICK1	9463	hgsc.bcm.edu	37	22	38467740	38467740	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PNPLA3	80339	hgsc.bcm.edu	37	22	44322980	44322980	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89690806	89690806	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPN11	5781	hgsc.bcm.edu	37	12	112892409	112892409	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
R3HDML	140902	hgsc.bcm.edu	37	20	42969922	42969922	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPN2	6185	hgsc.bcm.edu	37	20	35842247	35842247	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SH3BP4	23677	hgsc.bcm.edu	37	2	235950909	235950909	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC9A8	23315	hgsc.bcm.edu	37	20	48429462	48429462	+	Missense_Mutation	SNP	G	G	T	rs76846045	unknown	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SNAI2	6591	hgsc.bcm.edu	37	8	49833764	49833764	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SON	6651	hgsc.bcm.edu	37	21	34922635	34922635	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STK11IP	114790	hgsc.bcm.edu	37	2	220467482	220467482	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP15	9958	hgsc.bcm.edu	37	12	62777931	62777931	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZMYM2	7750	hgsc.bcm.edu	37	13	20656244	20656244	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF483	158399	hgsc.bcm.edu	37	9	114304001	114304001	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZSWIM5	57643	hgsc.bcm.edu	37	1	45484291	45484291	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4871-01	TCGA-CJ-4871-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
