Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
BRD1	23774	hgsc.bcm.edu	37	22	50187881	50187881	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf39	92749	hgsc.bcm.edu	37	2	26671607	26671607	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CA5B	11238	hgsc.bcm.edu	37	X	15768226	15768226	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDK2AP2	10263	hgsc.bcm.edu	37	11	67274954	67274954	+	Silent	SNP	G	G	C	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDKL5	6792	hgsc.bcm.edu	37	X	18616730	18616730	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL11A1	1301	hgsc.bcm.edu	37	1	103428247	103428247	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EFHC2	80258	hgsc.bcm.edu	37	X	44091880	44091880	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GBE1	2632	hgsc.bcm.edu	37	3	81635323	81635323	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRXCR1	389207	hgsc.bcm.edu	37	4	43032469	43032469	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HEATR7B2	133558	hgsc.bcm.edu	37	5	41000336	41000336	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HECW1	23072	hgsc.bcm.edu	37	7	43531769	43531769	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNH6	81033	hgsc.bcm.edu	37	17	61622984	61622984	+	Silent	SNP	A	A	C	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRTAP3-3	85293	hgsc.bcm.edu	37	17	39150329	39150329	+	Silent	SNP	T	T	G	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRIG1	26018	hgsc.bcm.edu	37	3	66463415	66463415	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC49	54839	hgsc.bcm.edu	37	15	71211393	71211393	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MRPS35	60488	hgsc.bcm.edu	37	12	27877103	27877103	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARP1	142	hgsc.bcm.edu	37	1	226555205	226555205	+	Nonsense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52661288	52661288	+	Splice_Site	SNP	C	C	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PFN2	5217	hgsc.bcm.edu	37	3	149684027	149684027	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3CA	5290	hgsc.bcm.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMARCA4	6597	hgsc.bcm.edu	37	19	11170779	11170779	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRBD1	55133	hgsc.bcm.edu	37	2	45800364	45800364	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNRC18	84629	hgsc.bcm.edu	37	7	5401349	5401349	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP54	159195	hgsc.bcm.edu	37	10	75294440	75294440	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF48	197407	hgsc.bcm.edu	37	16	30408855	30408855	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4872-01	TCGA-CJ-4872-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
