Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA1	19	hgsc.bcm.edu	37	9	107573139	107573139	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ABCB4	5244	hgsc.bcm.edu	37	7	87049340	87049340	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAMTS7	11173	hgsc.bcm.edu	37	15	79090348	79090348	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKR1B15	441282	hgsc.bcm.edu	37	7	134261183	134261183	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD11	29123	hgsc.bcm.edu	37	16	89350352	89350352	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAI3	577	hgsc.bcm.edu	37	6	69685178	69685178	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAP1	8314	hgsc.bcm.edu	37	3	52442023	52442023	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BTBD7	55727	hgsc.bcm.edu	37	14	93761134	93761134	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C16orf63	123811	hgsc.bcm.edu	37	16	15977977	15977977	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C6orf97	80129	hgsc.bcm.edu	37	6	151857578	151857578	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD4	920	hgsc.bcm.edu	37	12	6909481	6909481	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDKL3	51265	hgsc.bcm.edu	37	5	133643866	133643866	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CEP72	55722	hgsc.bcm.edu	37	5	624633	624633	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DAB2	1601	hgsc.bcm.edu	37	5	39382723	39382723	+	Silent	SNP	A	A	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPEP3	64180	hgsc.bcm.edu	37	16	68012420	68012420	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EML4	27436	hgsc.bcm.edu	37	2	42510110	42510110	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM13A	10144	hgsc.bcm.edu	37	4	89702427	89702427	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FHAD1	114827	hgsc.bcm.edu	37	1	15695983	15695983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FOXN3	1112	hgsc.bcm.edu	37	14	89656758	89656758	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GBA2	57704	hgsc.bcm.edu	37	9	35738047	35738047	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GJB1	2705	hgsc.bcm.edu	37	X	70444041	70444041	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HARS	3035	hgsc.bcm.edu	37	5	140057269	140057269	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HERC1	8925	hgsc.bcm.edu	37	15	64005044	64005044	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSP90AA1	3320	hgsc.bcm.edu	37	14	102550300	102550300	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HYAL1	3373	hgsc.bcm.edu	37	3	50338003	50338003	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0748	9840	hgsc.bcm.edu	37	12	55356811	55356811	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LYST	1130	hgsc.bcm.edu	37	1	235904825	235904825	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAML1	9794	hgsc.bcm.edu	37	5	179195993	179195993	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MBLAC1	255374	hgsc.bcm.edu	37	7	99725646	99725646	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MGAT4B	11282	hgsc.bcm.edu	37	5	179228972	179228972	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MSH6	2956	hgsc.bcm.edu	37	2	48027971	48027971	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCCRP1	342897	hgsc.bcm.edu	37	19	39688861	39688861	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCOA3	8202	hgsc.bcm.edu	37	20	46265231	46265231	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR51B4	79339	hgsc.bcm.edu	37	11	5322937	5322937	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHA2	56146	hgsc.bcm.edu	37	5	140175367	140175367	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE4A	5141	hgsc.bcm.edu	37	19	10565503	10565503	+	Splice_Site	SNP	A	A	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDS5B	23047	hgsc.bcm.edu	37	13	33306263	33306263	+	Nonsense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDZD2	23037	hgsc.bcm.edu	37	5	32089022	32089022	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3CA	5290	hgsc.bcm.edu	37	3	178948101	178948101	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRF	5792	hgsc.bcm.edu	37	1	44057602	44057602	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCP2	6342	hgsc.bcm.edu	37	1	53480709	53480709	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEPT2	4735	hgsc.bcm.edu	37	2	242276812	242276812	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC17A8	246213	hgsc.bcm.edu	37	12	100796248	100796248	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC22A11	55867	hgsc.bcm.edu	37	11	64326672	64326672	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC40A1	30061	hgsc.bcm.edu	37	2	190428477	190428477	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMARCD1	6602	hgsc.bcm.edu	37	12	50481179	50481179	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPATS2	65244	hgsc.bcm.edu	37	12	49884479	49884479	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPEF2	79925	hgsc.bcm.edu	37	5	35800103	35800103	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SRRM4	84530	hgsc.bcm.edu	37	12	119591354	119591354	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSTR4	6754	hgsc.bcm.edu	37	20	23016318	23016318	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STK11IP	114790	hgsc.bcm.edu	37	2	220466384	220466384	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D12	23232	hgsc.bcm.edu	37	10	96291048	96291048	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TIAM2	26230	hgsc.bcm.edu	37	6	155577714	155577714	+	Missense_Mutation	SNP	G	G	C	rs114239511	unknown	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMPRSS5	80975	hgsc.bcm.edu	37	11	113568092	113568103	+	In_Frame_Del	DEL	CTCACTTGCGCT	CTCACTTGCGCT	-	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	CTCACTTGCGCT	CTCACTTGCGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TOP1	7150	hgsc.bcm.edu	37	20	39728844	39728844	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIP13	9319	hgsc.bcm.edu	37	5	916029	916029	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBE2V1	7335	hgsc.bcm.edu	37	20	48732051	48732051	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
URB2	9816	hgsc.bcm.edu	37	1	229773001	229773001	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP26	83844	hgsc.bcm.edu	37	X	132161106	132161106	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VWF	7450	hgsc.bcm.edu	37	12	6180476	6180476	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VWF	7450	hgsc.bcm.edu	37	12	6180485	6180485	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZDHHC9	51114	hgsc.bcm.edu	37	X	128948750	128948750	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFP106	64397	hgsc.bcm.edu	37	15	42749284	42749284	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZMYM1	79830	hgsc.bcm.edu	37	1	35576005	35576005	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF862	643641	hgsc.bcm.edu	37	7	149559020	149559020	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZSCAN5B	342933	hgsc.bcm.edu	37	19	56701571	56701571	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4873-01	TCGA-CJ-4873-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
